Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006111

Physical Location & Seq

Genomic Coordinates Reverse (-)

22677765 .. 22681113

Gene Structure 3349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22610.13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGCGGGCAGATCGACGGCGGCGACGCGGCCGAAACCCCCGCAGCGGCGGCGGATTTCCAAATCCTCGAACCCCAAATTTCTCAAAGACCCTAAATTACTCTTCTCTTCCGCCTTGCTCCTTTGCGATGCGATCCTAGTCGCCCTTATCATCGCCTATGTCCCCTATACGAAGATAGATTGGGACGCGTACATGTCACAAGTTAGTGGGTTTCTTGGTGGAGAGAGAGACTACGCTAACTTAAAAGGCGACACAGGGCCGCTGGTTTATCCTGCTGGCTTCCTCTACTTTTATTCTGCCATTCAGTATGTTACAGGAGGCCAAGTTCATCCAGCTCAGATTTTGTTCGGGATTTTGTACATTATAAACTTGGGGATCATATTGTTCATCTATGGGAAGACAGATGTGGTTCCATGGTGGGCTTTGATCTTGCTTTGTCTATCGAAAAGGGTTCATTCTATTTTTGTGCTTCGTCTTTTTAATGACTGTTTGGCCATGATGCTCCTGTATGCTTCGTTGGCCTCACTTCTTTACCAGAAGTGGCATCTAGGACTGATCATTTTCAGTGGAGCTGTTTCCATAAAGATGAATGTGCTTCTCTATGCTCCACCTCTACTACTCCTCATGTTAAAGGCTATGAGTATCGGTAGAGTGATATCAGCTTTAGCTGGTGCGGCACTTGTACAGATACTGTTGGGGATGCCTTTCATCATGTCTCATCCGTTTGCATACATCTCAAGAGCCTTTAATCTCGGTCGAGTTTTTATTCACTTCTGGTCTGTTAATTTCAAGTTTGTTCCTGAGCCAATATTTGTATCGAAGGCATTTGCAATCTCTTTGCTGATTGCTCACCTTGGTTTACTCACTGCTTTTGCTCATTATAGATGGTGCATGCATGAAGGTGGACTCTTCAAATTTTTGTATTCTAGACTCGATCCTATAAAACTCAAATTTGCTCTTACAAGTTCATTCCCTTTGAAGAAGTCCTTCAATATCCATTCATCCAACAGGGTCCTTAGGAAAGAATATATTGTGACGACTATGTTTGTTGGGAATTTCATCGGCATTGTATGTGCTCGATCATTGCATTATCAGTTCTACTCGTGGTATTTCCATAGCTTACCATATCTATTGTGGAAAACGCCTTTTCCCACAGTACTACGCATATTGTTGTTTATCGGCATGGAGTTTTGCTGGAACGTCTTTCCTTCAAACCTATACTCATCGGCGATGCTTTTTTTTCTCCACATAGTAATACTGGTCGGTCTATGGTCTGCCCCGTCTGAATATCCTTTTGTGGACAACAAAGCATCGCCTGAAAACAAAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000033 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG3

Protein Analysis

445

Amino Acids

50.42

Weight (kDa)

9.75

Isoelectric Point (pI)

47.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47760 AT2G47760 AT2G47760 AT2G47760 AT2G47760
fragaria_vesca	FvH4_2g25370 FvH4_2g25370 FvH4_2g25370
malus_domestica	MD03G1285100.v1.1 MD03G1285200.v1.1 MD11G1304600.v1.1
prunus_persica	Prupe.8G258400_v2.0.a1
pyrus_communis	pycom03g22610 pycom11g26640
rosa_chinensis	RchiOBHm_Chr6g0293561
rosa_laevigata	RLG00000011941
rosa_multiflora	Rmu_co8425979.1_g000001 Rmu_sc0018527.1_g000001 Rmu_sc0037593.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174090
rosa_rugosa	Rorug06G0236500 Rorug06G0236600.1
rosa_samantha	Rh6AG349200 Rh6BG356600 Rh6CG363300 Rh6DG350200
rosa_wichuraiana	Rw6G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	365
AccII	CGCG	2 cut(s)	28, 188
AclWI	GGATC	3 cut(s)	127, 383, 929
AcoI	YGGCCR	2 cut(s)	29, 492
AcsI	RAATTY	4 cut(s)	77, 914, 950, 1054
AfaI	GTAC	4 cut(s)	191, 359, 684, 1158
AfiI	CCNNNNNNNGG	1 cut(s)	45
AflIII	ACRYGT	2 cut(s)	186, 192
AgsI	TTSAA	5 cut(s)	790, 913, 979, 991, 1212
AloI	GAACNNNNNNTCC	2 cut(s)	309, 341
AluBI	AGCT	5 cut(s)	335, 572, 662, 668, 1119
AluI	AGCT	5 cut(s)	335, 572, 662, 668, 1119
Alw21I	GWGCWC	1 cut(s)	1078
Alw26I	GTCTC	2 cut(s)	222, 720
AlwI	GGATC	3 cut(s)	127, 383, 929
AlwNI	CAGNNNCTG	1 cut(s)	691
AoxI	GGCC	5 cut(s)	29, 257, 319, 492, 519
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	4 cut(s)	77, 914, 950, 1054
Asp700I	GAANNNNTTC	1 cut(s)	986
AspS9I	GGNCC	2 cut(s)	257, 1012
AsuHPI	GGTGA	1 cut(s)	842
AvaII	GGWCC	1 cut(s)	1012
AxyI	CCTNAGG	1 cut(s)	1016
BalI	TGGCCA	1 cut(s)	494
BauI	CACGAG	1 cut(s)	1102
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	1078
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	1 cut(s)	879
BceAI	ACGGC	1 cut(s)	33
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	2 cut(s)	222, 720
BfaI	CTAG	3 cut(s)	137, 548, 927
BisI	GCNGC	7 cut(s)	21, 29, 44, 47, 50, 260, 675
BlsI	GCNGC	7 cut(s)	22, 30, 45, 48, 51, 261, 676
BmcAI	AGTACT	1 cut(s)	1158
Bme18I	GGWCC	1 cut(s)	1012
BmgT120I	GGNCC	2 cut(s)	257, 1012
BmiI	GGNNCC	2 cut(s)	411, 1013
BmsI	GCATC	6 cut(s)	118, 489, 553, 690, 1221, 1319
BpiI	GAAGAC	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	721
BsaJI	CCNNGG	2 cut(s)	413, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	1263
Bse21I	CCTNAGG	1 cut(s)	1016
Bse3DI	GCAATG	1 cut(s)	1082
BseDI	CCNNGG	2 cut(s)	413, 853
BseGI	GGATG	4 cut(s)	328, 705, 718, 1001
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	1082
BseMII	CTCAG	2 cut(s)	350, 792
BseNI	ACTGG	1 cut(s)	1263
BseRI	GAGGAG	1 cut(s)	611
BseX3I	CGGCCG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	55
Bsh1236I	CGCG	2 cut(s)	28, 188
Bsh1285I	CGRYCG	2 cut(s)	32, 757
BshFI	GGCC	5 cut(s)	31, 259, 321, 494, 521
BsiEI	CGRYCG	2 cut(s)	32, 757
BsiHKAI	GWGCWC	1 cut(s)	1078
BslFI	GGGAC	2 cut(s)	146, 197
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	2 cut(s)	222, 720
BsmFI	GGGAC	2 cut(s)	146, 197
BsnI	GGCC	5 cut(s)	31, 259, 321, 494, 521
Bsp1286I	GDGCHC	1 cut(s)	1078
Bsp1407I	TGTACA	2 cut(s)	357, 682
Bsp143I	GATC	7 cut(s)	11, 132, 375, 426, 555, 934, 1079
Bsp19I	CCATGG	1 cut(s)	413
BspANI	GGCC	5 cut(s)	31, 259, 321, 494, 521
BspCNI	CTCAG	2 cut(s)	349, 793
BspFNI	CGCG	2 cut(s)	28, 188
BspLI	GGNNCC	2 cut(s)	411, 1013
BspPI	GGATC	3 cut(s)	127, 383, 929
BsrDI	GCAATG	1 cut(s)	1082
BsrGI	TGTACA	2 cut(s)	357, 682
BsrI	ACTGG	1 cut(s)	1263
BssECI	CCNNGG	2 cut(s)	413, 853
BssMI	GATC	7 cut(s)	11, 132, 375, 426, 555, 934, 1079
BssSI	CACGAG	1 cut(s)	1102
BssT1I	CCWWGG	2 cut(s)	413, 853
Bst2BI	CACGAG	1 cut(s)	1102
Bst4CI	ACNGT	3 cut(s)	488, 693, 1156
Bst6I	CTCTTC	3 cut(s)	107, 112, 914
BstAUI	TGTACA	2 cut(s)	357, 682
BstC8I	GCNNGC	3 cut(s)	7, 277, 893
BstDEI	CTNAG	3 cut(s)	336, 801, 1016
BstDSI	CCRYGG	1 cut(s)	413
BstF5I	GGATG	4 cut(s)	328, 705, 718, 1001
BstFNI	CGCG	2 cut(s)	28, 188
BstKTI	GATC	7 cut(s)	14, 135, 378, 429, 558, 937, 1082
BstMAI	GTCTC	2 cut(s)	222, 720
BstMBI	GATC	7 cut(s)	11, 132, 375, 426, 555, 934, 1079
BstMCI	CGRYCG	2 cut(s)	32, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 518, 674
BstNSI	RCATGY	2 cut(s)	196, 895
BstUI	CGCG	2 cut(s)	28, 188
BstV1I	GCAGC	1 cut(s)	55
BstV2I	GAAGAC	1 cut(s)	404
BstZI	CGGCCG	1 cut(s)	29
Bsu36I	CCTNAGG	1 cut(s)	1016
BsuRI	GGCC	5 cut(s)	31, 259, 321, 494, 521
BtgI	CCRYGG	1 cut(s)	413
BtgZI	GCGATG	4 cut(s)	136, 141, 1244, 1296
BtsCI	GGATG	4 cut(s)	328, 705, 718, 1001
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	2 cut(s)	571, 864
Cac8I	GCNNGC	3 cut(s)	7, 277, 893
CaiI	CAGNNNCTG	1 cut(s)	691
Cfr13I	GGNCC	2 cut(s)	257, 1012
CseI	GACGC	2 cut(s)	34, 194
Csp6I	GTAC	4 cut(s)	190, 358, 683, 1157
CviAII	CATG	8 cut(s)	193, 414, 496, 625, 712, 892, 896, 1183
CviQI	GTAC	4 cut(s)	190, 358, 683, 1157
DdeI	CTNAG	3 cut(s)	336, 801, 1016
DpnI	GATC	7 cut(s)	13, 134, 377, 428, 557, 936, 1081
DpnII	GATC	7 cut(s)	11, 132, 375, 426, 555, 934, 1079
EaeI	YGGCCR	2 cut(s)	29, 492
EagI	CGGCCG	1 cut(s)	29
Eam1104I	CTCTTC	3 cut(s)	107, 112, 914
EarI	CTCTTC	3 cut(s)	107, 112, 914
EciI	GGCGGA	2 cut(s)	67, 100
EclXI	CGGCCG	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	413, 853
Eco32I	GATATC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	1012
Eco52I	CGGCCG	1 cut(s)	29
Eco81I	CCTNAGG	1 cut(s)	1016
EcoO109I	RGGNCCY	1 cut(s)	1012
EcoRV	GATATC	1 cut(s)	657
EcoT14I	CCWWGG	2 cut(s)	413, 853
EcoT22I	ATGCAT	1 cut(s)	897
ErhI	CCWWGG	2 cut(s)	413, 853
FaeI	CATG	8 cut(s)	196, 417, 499, 628, 715, 895, 899, 1186
FalI	AAGNNNNNCTT	2 cut(s)	971, 1003
FaqI	GGGAC	2 cut(s)	146, 197
FatI	CATG	8 cut(s)	192, 413, 495, 624, 711, 891, 895, 1182
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	7 cut(s)	21, 29, 44, 47, 50, 260, 675
FokI	GGATG	4 cut(s)	315, 705, 712, 988
Fsp4HI	GCNGC	7 cut(s)	21, 29, 44, 47, 50, 260, 675
FspBI	CTAG	3 cut(s)	137, 548, 927
GluI	GCNGC	7 cut(s)	21, 29, 44, 47, 50, 260, 675
HaeIII	GGCC	5 cut(s)	31, 259, 321, 494, 521
HgaI	GACGC	2 cut(s)	34, 194
Hin1II	CATG	8 cut(s)	196, 417, 499, 628, 715, 895, 899, 1186
HinfI	GANTC	2 cut(s)	906, 930
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	3 cut(s)	860, 905, 1300
Hpy188I	TCNGA	2 cut(s)	339, 1285
Hpy188III	TCNNGA	4 cut(s)	349, 738, 800, 927
Hpy8I	GTNNAC	3 cut(s)	860, 905, 1300
Hpy99I	CGWCG	2 cut(s)	19, 28
HpyAV	CCTTC	4 cut(s)	814, 893, 997, 1218
HpyCH4III	ACNGT	3 cut(s)	488, 693, 1156
HpyCH4IV	ACGT	1 cut(s)	1200
HpyCH4V	TGCA	5 cut(s)	728, 830, 891, 895, 1087
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 518, 674
HpyF3I	CTNAG	3 cut(s)	336, 801, 1016
HpySE526I	ACGT	1 cut(s)	1200
Hsp92II	CATG	8 cut(s)	196, 417, 499, 628, 715, 895, 899, 1186
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	7 cut(s)	11, 132, 375, 426, 555, 934, 1079
LmnI	GCTCC	4 cut(s)	123, 507, 569, 610
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	6 cut(s)	118, 489, 553, 690, 1221, 1319
MaeI	CTAG	3 cut(s)	137, 548, 927
MaeII	ACGT	1 cut(s)	1200
MaeIII	GTNAC	3 cut(s)	195, 310, 1033
MalI	GATC	7 cut(s)	13, 134, 377, 428, 557, 936, 1081
MboI	GATC	7 cut(s)	11, 132, 375, 426, 555, 934, 1079
MboII	GAAGA	6 cut(s)	94, 99, 184, 409, 901, 991
MhlI	GDGCHC	1 cut(s)	1078
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	6 cut(s)	77, 95, 784, 914, 950, 1054
MluI	ACGCGT	1 cut(s)	186
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	2 cut(s)	900, 924
MmeI	TCCRAC	1 cut(s)	1029
MnlI	CCTC	6 cut(s)	76, 293, 311, 532, 621, 632
Mox20I	TGGCCA	1 cut(s)	494
Mph1103I	ATGCAT	1 cut(s)	897
MroXI	GAANNNNTTC	1 cut(s)	986
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	5 cut(s)	242, 480, 629, 747, 783
MslI	CAYNNNNRTG	2 cut(s)	584, 900
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	46, 262
MvnI	CGCG	2 cut(s)	28, 188
MwoI	GCNNNNNNNGC	3 cut(s)	49, 518, 674
NcoI	CCATGG	1 cut(s)	413
NdeII	GATC	7 cut(s)	11, 132, 375, 426, 555, 934, 1079
NlaIII	CATG	8 cut(s)	196, 417, 499, 628, 715, 895, 899, 1186
NlaIV	GGNNCC	2 cut(s)	411, 1013
NmuCI	GTSAC	2 cut(s)	195, 1033
NsiI	ATGCAT	1 cut(s)	897
NspI	RCATGY	2 cut(s)	196, 895
PaeI	GCATGC	1 cut(s)	895
PciI	ACATGT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PdmI	GAANNNNTTC	1 cut(s)	986
PkrI	GCNGC	7 cut(s)	22, 30, 45, 48, 51, 261, 676
PleI	GAGTC	2 cut(s)	900, 924
PpsI	GAGTC	2 cut(s)	900, 924
PpuMI	RGGWCCY	1 cut(s)	1012
PscI	ACATGT	1 cut(s)	192
PsiI	TTATAA	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	1012
PspN4I	GGNNCC	2 cut(s)	411, 1013
PspPI	GGNCC	2 cut(s)	257, 1012
PspPPI	RGGWCCY	1 cut(s)	1012
PstNI	CAGNNNCTG	1 cut(s)	691
RsaI	GTAC	4 cut(s)	191, 359, 684, 1158
RsaNI	GTAC	4 cut(s)	190, 358, 683, 1157
RseI	CAYNNNNRTG	2 cut(s)	584, 900
SaqAI	TTAA	5 cut(s)	242, 480, 629, 747, 783
SatI	GCNGC	7 cut(s)	21, 29, 44, 47, 50, 260, 675
Sau3AI	GATC	7 cut(s)	11, 132, 375, 426, 555, 934, 1079
Sau96I	GGNCC	2 cut(s)	257, 1012
ScaI	AGTACT	1 cut(s)	1158
SchI	GAGTC	2 cut(s)	900, 924
SduI	GDGCHC	1 cut(s)	1078
SfaNI	GCATC	6 cut(s)	118, 489, 553, 690, 1221, 1319
SinI	GGWCC	1 cut(s)	1012
SmiMI	CAYNNNNRTG	2 cut(s)	584, 900
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
SphI	GCATGC	1 cut(s)	895
Sse9I	AATT	6 cut(s)	77, 95, 784, 914, 950, 1054
SspI	AATATT	1 cut(s)	810
SspMI	CTAG	3 cut(s)	137, 548, 927
StyI	CCWWGG	2 cut(s)	413, 853
TaaI	ACNGT	3 cut(s)	488, 693, 1156
TaiI	ACGT	1 cut(s)	1203
TaqI	TCGA	7 cut(s)	14, 68, 443, 757, 818, 933, 1078
TaqII	GACCGA	2 cut(s)	743, 1253
TasI	AATT	6 cut(s)	77, 95, 784, 914, 950, 1054
TatI	WGTACW	3 cut(s)	357, 682, 1156
TauI	GCSGC	6 cut(s)	23, 31, 49, 52, 262, 677
Tru1I	TTAA	5 cut(s)	242, 480, 629, 747, 783
Tru9I	TTAA	5 cut(s)	242, 480, 629, 747, 783
TscAI	CASTG	2 cut(s)	571, 871
TseFI	GTSAC	2 cut(s)	195, 1033
TseI	GCWGC	1 cut(s)	43
Tsp45I	GTSAC	2 cut(s)	195, 1033
TspDTI	ATGAA	9 cut(s)	317, 376, 443, 602, 697, 912, 957, 990, 1048
TspGWI	ACGGA	1 cut(s)	711
TspRI	CASTG	2 cut(s)	571, 871
VpaK11BI	GGWCC	1 cut(s)	1012
XapI	RAATTY	4 cut(s)	77, 914, 950, 1054
XbaI	TCTAGA	1 cut(s)	926
XceI	RCATGY	2 cut(s)	196, 895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1131
XmnI	GAANNNNTTC	1 cut(s)	986
XspI	CTAG	3 cut(s)	137, 548, 927
ZrmI	AGTACT	1 cut(s)	1158
Zsp2I	ATGCAT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.