Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018527.1

Orthogroup ID

OG0006111

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1752

Gene Structure 1752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018527.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgtctcatccatttgcatacatctcaggagcctttaatcttggccgtgtattcatccacttctggtctgttaatttcaagttccttcctgagccaatatttgtctccaaggcatttgcgatctctttgctggttgtacaccttgttttacttgcagcttttgctcactatagatggtgcaagcatgaaggaggagttttcaaatttttgtattctagacttgtttctataaaactcaaattttctctaacaaatacccattcctacaaggctcttaagagagaacatattctgacaactatgttcgttggaaatttcatcggcattctatgtgcccgatcactgcattatcaattctactcttggtatttccacacattaccttatttattgtggaaaacaccttttccttcgtttctacgggtaatattgtttactggggtggagctttgctggaatgtgtatccttccaacctttactcatcagcattgcttcttggtctccacttagtaatactatttggtctgtggtctgccccatctgaatatccttacgtggacaagaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000033 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG3

Protein Analysis

189

Amino Acids

22.06

Weight (kDa)

9.68

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47760 AT2G47760 AT2G47760 AT2G47760 AT2G47760
fragaria_vesca	FvH4_2g25370 FvH4_2g25370 FvH4_2g25370
malus_domestica	MD03G1285100.v1.1 MD03G1285200.v1.1 MD11G1304600.v1.1
prunus_persica	Prupe.8G258400_v2.0.a1
pyrus_communis	pycom03g22610 pycom11g26640
rosa_chinensis	RchiOBHm_Chr6g0293561
rosa_laevigata	RLG00000011941
rosa_multiflora	Rmu_co8425979.1_g000001 Rmu_sc0018527.1_g000001 Rmu_sc0037593.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174090
rosa_rugosa	Rorug06G0236500 Rorug06G0236600.1
rosa_samantha	Rh6AG349200 Rh6BG356600 Rh6CG363300 Rh6DG350200
rosa_wichuraiana	Rw6G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	3 cut(s)	203, 239, 313
AfaI	GTAC	1 cut(s)	138
AflII	CTTAAG	1 cut(s)	275
AgsI	TTSAA	2 cut(s)	79, 202
AluBI	AGCT	2 cut(s)	158, 448
AluI	AGCT	2 cut(s)	158, 448
Alw26I	GTCTC	3 cut(s)	9, 109, 506
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	1 cut(s)	155
ApoI	RAATTY	3 cut(s)	203, 239, 313
Asp700I	GAANNNNTTC	1 cut(s)	288
BaeGI	GKGCMC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	167
BccI	CCATC	2 cut(s)	168, 547
BceAI	ACGGC	1 cut(s)	30
BcgI	CGANNNNNNTGC	2 cut(s)	109, 143
BciVI	GTATCC	1 cut(s)	474
BcoDI	GTCTC	3 cut(s)	9, 109, 506
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	169
BfrI	CTTAAG	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	474
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	31
BmrI	ACTGGG	1 cut(s)	447
BmuI	ACTGGG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	90
BsaAI	YACGTR	1 cut(s)	556
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	442
Bse3DI	GCAATG	1 cut(s)	488
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	7, 54
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	2 cut(s)	39, 81
BseNI	ACTGG	1 cut(s)	442
BseRI	GAGGAG	1 cut(s)	207
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	167
BshFI	GGCC	1 cut(s)	45
BsmAI	GTCTC	3 cut(s)	9, 109, 506
BsmI	GAATGC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	45
Bso31I	GGTCTC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp1407I	TGTACA	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	120, 338
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	38, 82
BspLI	GGNNCC	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	442
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	120, 338
BssT1I	CCWWGG	1 cut(s)	108
BstAFI	CTTAAG	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstAUI	TGTACA	1 cut(s)	136
BstBAI	YACGTR	1 cut(s)	556
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	3 cut(s)	25, 90, 508
BstF5I	GGATG	2 cut(s)	7, 54
BstKTI	GATC	2 cut(s)	123, 341
BstMAI	GTCTC	3 cut(s)	9, 109, 506
BstMBI	GATC	2 cut(s)	120, 338
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	169
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	167
BsuI	GTATCC	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	7, 54
BtsI	GCAGTG	1 cut(s)	341
BtsIMutI	CAGTG	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	182
Csp6I	GTAC	1 cut(s)	137
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	6 cut(s)	32, 45, 94, 158, 272, 448
CviKI_1	RGCY	6 cut(s)	32, 45, 94, 158, 272, 448
CviQI	GTAC	1 cut(s)	137
DdeI	CTNAG	3 cut(s)	25, 90, 508
DpnI	GATC	2 cut(s)	122, 340
DpnII	GATC	2 cut(s)	120, 338
EaeI	YGGCCR	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	1 cut(s)	188
FaiI	YATR	7 cut(s)	19, 171, 186, 230, 288, 302, 331
FatI	CATG	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	156
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	216
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	45
Hin1II	CATG	1 cut(s)	188
Hpy166II	GTNNAC	3 cut(s)	139, 435, 559
Hpy188I	TCNGA	2 cut(s)	294, 544
Hpy188III	TCNNGA	3 cut(s)	27, 89, 216
Hpy8I	GTNNAC	3 cut(s)	139, 435, 559
HpyAV	CCTTC	4 cut(s)	95, 182, 420, 477
HpyCH4IV	ACGT	1 cut(s)	555
HpyCH4V	TGCA	4 cut(s)	17, 155, 180, 346
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	3 cut(s)	25, 90, 508
HpySE526I	ACGT	1 cut(s)	555
Hsp92II	CATG	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	120, 338
LmnI	GCTCC	2 cut(s)	29, 445
LpnPI	CCDG	6 cut(s)	12, 49, 102, 116, 423, 439
Lsp1109I	GCAGC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	1 cut(s)	555
MalI	GATC	2 cut(s)	122, 340
MboI	GATC	2 cut(s)	120, 338
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	5 cut(s)	73, 203, 239, 313, 353
MmeI	TCCRAC	2 cut(s)	289, 495
MnlI	CCTC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	288
MseI	TTAA	3 cut(s)	36, 72, 276
MspCI	CTTAAG	1 cut(s)	275
Mva1269I	GAATGC	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	2 cut(s)	120, 338
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	31
PctI	GAATGC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	288
PkrI	GCNGC	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	138
RsaNI	GTAC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	36, 72, 276
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	2 cut(s)	120, 338
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	7 cut(s)	144, 160, 385, 406, 450, 477, 558
SfcI	CTRYAG	1 cut(s)	169
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	5 cut(s)	73, 203, 239, 313, 353
SspI	AATATT	2 cut(s)	99, 429
SspMI	CTAG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	1 cut(s)	558
TasI	AATT	5 cut(s)	73, 203, 239, 313, 353
TatI	WGTACW	1 cut(s)	136
Tru1I	TTAA	3 cut(s)	36, 72, 276
Tru9I	TTAA	3 cut(s)	36, 72, 276
TscAI	CASTG	1 cut(s)	348
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	43, 201, 307
TspRI	CASTG	1 cut(s)	348
Vha464I	CTTAAG	1 cut(s)	275
XapI	RAATTY	3 cut(s)	203, 239, 313
XbaI	TCTAGA	1 cut(s)	215
XmnI	GAANNNNTTC	1 cut(s)	288
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.