Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006111

Physical Location & Seq

Genomic Coordinates Reverse (-)

41949025 .. 41952689

Gene Structure 3665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1304600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGCGGGCAGATCGACGGCGGCGACACGGAGGAACTCCCCGCAGCGCCGGCGGATTTCCAACTCCTCGAACCCCAAAATTCTCAAAGACCCTAAATTACTCTTCGCTTCCGCCTTGCTCCTCTGCGATTCGTTCCTCGTAGCCCTTATCGTCGCCTATGTCCCCTATACGAAGATAGATTGGGACGCGTACATGTCACAAGTTAGTGGGTTTCTTGGTGGAGAAAGAGACTACGCGAACTTAAAAGGGGACACAGGGCCGCTGGTCTATCCTGCTGGTTACCTGTACTTTTATTCTGCTATTCAATATGTTACAGGAGGCCAAGTTTATCCAGCTCAGATTTTGTTCGGGATTTTTTACATTGTAAACTTGGGGATCATTTTGTTCATCTATGGGAAGACTAATGTGGTTCCATGGTGGGCTTTTACCTTGCTTTGTCTATCGAAAAGGGTGCATTCTATTTTTGTGCTTCGTCTTTTTAATGACTGTTTGGCCATGATGCTCTTGTACGCTTCGTTGGCTGCACTTCTTTACCAAAGATGGCATCTTGGACTGATCATTTTCAGTGGAGCTGTTTCAATAAAGATGAATGTGCTTCTCTATGCTCCACCGCTACTACTCCTCATGTTAAAGGCTATGAGTATCAGTGGAGTGATATCAGCTTTAGCTGGTGCAGCGTTGCTACAGATACTGTTGGGGATGCCTTTCATCATGTCTCATCCATTTGCATACGTCTCAAGAGCCTTTAATCTCGGTCGAGTCTTTATCCACTTCTGGTCTGTTAATTTCAAGTTTGTTCCTGAGCCAATATTTGTATCGAAGGCATTTGCAATCTTGTTGCTGATTGCTCACCTTGGTTTACTCACAGCTTTTGCTCATTATAGATGGTGCATGCATGAAGGCGGACTCTTCAAATTTTTGTATTCTAGACTTGATCCTTTAAAACTCAAATTTGCTCTGACAAGTTCATTCCCTTTGAAGAAGTCCTCCAGTAGCCATTCATCCGCCAGAGTTCTTAGGAAAGAATATATTGTGACAACTATGTTTGTTGGGAATTTCATCGGCATTGTATGTGCTCGATCATTGCATTATCAGTTCTACTCTTGGTATTTCCATAGCTTACCTTATCTATTGTGGAAAACGCCTTTCCCCACAGTACTGCGTGTAATGTTGTTTATTGGGGTGGAGTTTTGCTGGAACGTCTTTCCTTCTAGCATTTACTCGTCGGCAATGCTTCTTTTTCTCCACCTAGTAATACTGGTCGGTCTGTGGTCCGCCCCACCTGAATATCCTTATGTGGACGACAAAGCATCGACTCAAAACAAAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000033 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG3

Protein Analysis

445

Amino Acids

50.26

Weight (kDa)

9.71

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALG3	PF05208	38 - 409	1.6e-133	ALG3 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47760 AT2G47760 AT2G47760 AT2G47760 AT2G47760
fragaria_vesca	FvH4_2g25370 FvH4_2g25370 FvH4_2g25370
malus_domestica	MD03G1285100.v1.1 MD03G1285200.v1.1 MD11G1304600.v1.1
prunus_persica	Prupe.8G258400_v2.0.a1
pyrus_communis	pycom03g22610 pycom11g26640
rosa_chinensis	RchiOBHm_Chr6g0293561
rosa_laevigata	RLG00000011941
rosa_multiflora	Rmu_co8425979.1_g000001 Rmu_sc0018527.1_g000001 Rmu_sc0037593.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174090
rosa_rugosa	Rorug06G0236500 Rorug06G0236600.1
rosa_samantha	Rh6AG349200 Rh6BG356600 Rh6CG363300 Rh6DG350200
rosa_wichuraiana	Rw6G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	188, 236
AclWI	GGATC	2 cut(s)	383, 929
AcoI	YGGCCR	1 cut(s)	492
AcsI	RAATTY	4 cut(s)	78, 914, 950, 1054
AfaI	GTAC	4 cut(s)	191, 287, 509, 1158
AflIII	ACRYGT	2 cut(s)	186, 192
AgsI	TTSAA	5 cut(s)	305, 579, 790, 913, 979
AluBI	AGCT	6 cut(s)	335, 572, 662, 668, 869, 1119
AluI	AGCT	6 cut(s)	335, 572, 662, 668, 869, 1119
Alw21I	GWGCWC	1 cut(s)	1078
Alw26I	GTCTC	3 cut(s)	222, 720, 739
AlwI	GGATC	2 cut(s)	383, 929
AlwNI	CAGNNNCTG	1 cut(s)	691
AoxI	GGCC	3 cut(s)	257, 319, 492
ApeKI	GCWGC	3 cut(s)	43, 521, 674
ApoI	RAATTY	4 cut(s)	78, 914, 950, 1054
AspLEI	GCGC	1 cut(s)	48
AspS9I	GGNCC	2 cut(s)	257, 1272
AsuHPI	GGTGA	1 cut(s)	842
AvaII	GGWCC	1 cut(s)	1272
BalI	TGGCCA	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	1078
BbvI	GCAGC	3 cut(s)	55, 508, 686
BccI	CCATC	2 cut(s)	534, 879
BceAI	ACGGC	1 cut(s)	33
BcgI	CGANNNNNNTGC	2 cut(s)	433, 467
BclI	TGATCA	1 cut(s)	555
BcoDI	GTCTC	3 cut(s)	222, 720, 739
BfaI	CTAG	3 cut(s)	927, 1212, 1250
BfmI	CTRYAG	1 cut(s)	683
BfoI	RGCGCY	1 cut(s)	49
BisI	GCNGC	5 cut(s)	21, 44, 260, 522, 675
BlsI	GCNGC	5 cut(s)	22, 45, 261, 523, 676
BmcAI	AGTACT	1 cut(s)	1158
Bme18I	GGWCC	1 cut(s)	1272
BmgT120I	GGNCC	2 cut(s)	257, 1272
BmiI	GGNNCC	1 cut(s)	411
BmsI	GCATC	4 cut(s)	489, 553, 690, 1319
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	973
Bpu10I	CCTNAGC	1 cut(s)	801
BpuEI	CTTGAG	1 cut(s)	721
BsaJI	CCNNGG	2 cut(s)	413, 853
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	990, 1263
Bse3DI	GCAATG	2 cut(s)	1082, 1236
BseDI	CCNNGG	2 cut(s)	413, 853
BseGI	GGATG	3 cut(s)	705, 718, 1001
BseMI	GCAATG	2 cut(s)	1082, 1236
BseMII	CTCAG	2 cut(s)	350, 792
BseNI	ACTGG	2 cut(s)	990, 1263
BseRI	GAGGAG	3 cut(s)	55, 110, 611
BseXI	GCAGC	3 cut(s)	55, 508, 686
BsgI	GTGCAG	2 cut(s)	507, 693
Bsh1236I	CGCG	2 cut(s)	188, 236
Bsh1285I	CGRYCG	1 cut(s)	757
BshFI	GGCC	3 cut(s)	259, 321, 494
BsiEI	CGRYCG	1 cut(s)	757
BsiHKAI	GWGCWC	1 cut(s)	1078
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	3 cut(s)	146, 197, 263
BsmAI	GTCTC	3 cut(s)	222, 720, 739
BsmBI	CGTCTC	1 cut(s)	739
BsmFI	GGGAC	3 cut(s)	146, 197, 263
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	3 cut(s)	259, 321, 494
Bsp1286I	GDGCHC	1 cut(s)	1078
Bsp143I	GATC	5 cut(s)	11, 375, 555, 934, 1079
Bsp19I	CCATGG	1 cut(s)	413
BspANI	GGCC	3 cut(s)	259, 321, 494
BspCNI	CTCAG	2 cut(s)	349, 793
BspFNI	CGCG	2 cut(s)	188, 236
BspLI	GGNNCC	1 cut(s)	411
BspPI	GGATC	2 cut(s)	383, 929
BsrDI	GCAATG	2 cut(s)	1082, 1236
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	990, 1263
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	413, 853
BssMI	GATC	5 cut(s)	11, 375, 555, 934, 1079
BssT1I	CCWWGG	2 cut(s)	413, 853
Bst4CI	ACNGT	3 cut(s)	488, 693, 1156
Bst6I	CTCTTC	2 cut(s)	107, 914
BstC8I	GCNNGC	3 cut(s)	7, 50, 893
BstDEI	CTNAG	3 cut(s)	336, 801, 1016
BstDSI	CCRYGG	1 cut(s)	413
BstEII	GGTNACC	1 cut(s)	278
BstF5I	GGATG	3 cut(s)	705, 718, 1001
BstFNI	CGCG	2 cut(s)	188, 236
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	5 cut(s)	14, 378, 558, 937, 1082
BstMAI	GTCTC	3 cut(s)	222, 720, 739
BstMBI	GATC	5 cut(s)	11, 375, 555, 934, 1079
BstMCI	CGRYCG	1 cut(s)	757
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 518, 674
BstNSI	RCATGY	2 cut(s)	196, 895
BstPI	GGTNACC	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	683
BstUI	CGCG	2 cut(s)	188, 236
BstV1I	GCAGC	3 cut(s)	55, 508, 686
BstV2I	GAAGAC	1 cut(s)	404
BsuRI	GGCC	3 cut(s)	259, 321, 494
BtgI	CCRYGG	1 cut(s)	413
BtsCI	GGATG	3 cut(s)	705, 718, 1001
BtsIMutI	CAGTG	2 cut(s)	571, 652
Cac8I	GCNNGC	3 cut(s)	7, 50, 893
CaiI	CAGNNNCTG	1 cut(s)	691
CfoI	GCGC	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	257, 1272
CseI	GACGC	1 cut(s)	194
Csp6I	GTAC	4 cut(s)	190, 286, 508, 1157
CviAII	CATG	7 cut(s)	193, 414, 496, 625, 712, 892, 896
CviQI	GTAC	4 cut(s)	190, 286, 508, 1157
DdeI	CTNAG	3 cut(s)	336, 801, 1016
DpnI	GATC	5 cut(s)	13, 377, 557, 936, 1081
DpnII	GATC	5 cut(s)	11, 375, 555, 934, 1079
DraI	TTTAAA	1 cut(s)	942
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	2 cut(s)	107, 914
EarI	CTCTTC	2 cut(s)	107, 914
EciI	GGCGGA	5 cut(s)	67, 100, 918, 994, 1264
Eco130I	CCWWGG	2 cut(s)	413, 853
Eco32I	GATATC	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	1272
Eco91I	GGTNACC	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	278
EcoRV	GATATC	1 cut(s)	657
EcoT14I	CCWWGG	2 cut(s)	413, 853
EcoT22I	ATGCAT	1 cut(s)	897
ErhI	CCWWGG	2 cut(s)	413, 853
Esp3I	CGTCTC	1 cut(s)	739
FaeI	CATG	7 cut(s)	196, 417, 499, 628, 715, 895, 899
FaqI	GGGAC	3 cut(s)	146, 197, 263
FatI	CATG	7 cut(s)	192, 413, 495, 624, 711, 891, 895
FauI	CCCGC	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	555
Fnu4HI	GCNGC	5 cut(s)	21, 44, 260, 522, 675
FokI	GGATG	3 cut(s)	705, 712, 988
Fsp4HI	GCNGC	5 cut(s)	21, 44, 260, 522, 675
FspBI	CTAG	3 cut(s)	927, 1212, 1250
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	5 cut(s)	21, 44, 260, 522, 675
GsuI	CTGGAG	1 cut(s)	973
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	259, 321, 494
HapII	CCGG	1 cut(s)	49
HgaI	GACGC	1 cut(s)	194
HhaI	GCGC	1 cut(s)	48
Hin1II	CATG	7 cut(s)	196, 417, 499, 628, 715, 895, 899
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	4 cut(s)	128, 759, 906, 1315
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	842
Hpy166II	GTNNAC	3 cut(s)	367, 860, 1300
Hpy188I	TCNGA	2 cut(s)	339, 960
Hpy188III	TCNNGA	4 cut(s)	349, 738, 800, 927
Hpy8I	GTNNAC	3 cut(s)	367, 860, 1300
Hpy99I	CGWCG	3 cut(s)	19, 155, 1228
HpyAV	CCTTC	3 cut(s)	814, 893, 1218
HpyCH4III	ACNGT	3 cut(s)	488, 693, 1156
HpyCH4IV	ACGT	2 cut(s)	732, 1200
HpyCH4V	TGCA	8 cut(s)	454, 524, 674, 728, 830, 891, 895, 1087
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 518, 674
HpyF3I	CTNAG	3 cut(s)	336, 801, 1016
HpySE526I	ACGT	2 cut(s)	732, 1200
Hsp92II	CATG	7 cut(s)	196, 417, 499, 628, 715, 895, 899
HspAI	GCGC	1 cut(s)	46
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Ksp22I	TGATCA	1 cut(s)	555
Kzo9I	GATC	5 cut(s)	11, 375, 555, 934, 1079
LmnI	GCTCC	3 cut(s)	123, 569, 610
Lsp1109I	GCAGC	3 cut(s)	55, 508, 686
LweI	GCATC	4 cut(s)	489, 553, 690, 1319
MaeI	CTAG	3 cut(s)	927, 1212, 1250
MaeII	ACGT	2 cut(s)	732, 1200
MaeIII	GTNAC	4 cut(s)	195, 278, 310, 1033
MalI	GATC	5 cut(s)	13, 377, 557, 936, 1081
MboI	GATC	5 cut(s)	11, 375, 555, 934, 1079
MboII	GAAGA	5 cut(s)	94, 184, 409, 901, 991
MhlI	GDGCHC	1 cut(s)	1078
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	6 cut(s)	78, 95, 784, 914, 950, 1054
MluI	ACGCGT	1 cut(s)	186
MluNI	TGGCCA	1 cut(s)	494
MlyI	GAGTC	3 cut(s)	768, 900, 1309
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	7 cut(s)	24, 76, 131, 146, 311, 632, 997
Mox20I	TGGCCA	1 cut(s)	494
Mph1103I	ATGCAT	1 cut(s)	897
MreI	CGCCGGCG	1 cut(s)	48
MroNI	GCCGGC	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	6 cut(s)	242, 480, 629, 747, 783, 941
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	262
MspI	CCGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	454
MvnI	CGCG	2 cut(s)	188, 236
MwoI	GCNNNNNNNGC	3 cut(s)	49, 518, 674
NaeI	GCCGGC	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	413
NdeII	GATC	5 cut(s)	11, 375, 555, 934, 1079
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	7 cut(s)	196, 417, 499, 628, 715, 895, 899
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	2 cut(s)	195, 1033
NsiI	ATGCAT	1 cut(s)	897
NspI	RCATGY	2 cut(s)	196, 895
PaeI	GCATGC	1 cut(s)	895
PciI	ACATGT	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	1 cut(s)	454
PdiI	GCCGGC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	5 cut(s)	22, 45, 261, 523, 676
PleI	GAGTC	3 cut(s)	767, 900, 1309
PpsI	GAGTC	3 cut(s)	767, 900, 1309
PscI	ACATGT	1 cut(s)	192
PspEI	GGTNACC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	2 cut(s)	257, 1272
PstNI	CAGNNNCTG	1 cut(s)	691
RsaI	GTAC	4 cut(s)	191, 287, 509, 1158
RsaNI	GTAC	4 cut(s)	190, 286, 508, 1157
SaqAI	TTAA	6 cut(s)	242, 480, 629, 747, 783, 941
SatI	GCNGC	5 cut(s)	21, 44, 260, 522, 675
Sau3AI	GATC	5 cut(s)	11, 375, 555, 934, 1079
Sau96I	GGNCC	2 cut(s)	257, 1272
ScaI	AGTACT	1 cut(s)	1158
SchI	GAGTC	3 cut(s)	768, 900, 1309
SduI	GDGCHC	1 cut(s)	1078
SfaNI	GCATC	4 cut(s)	489, 553, 690, 1319
SfcI	CTRYAG	1 cut(s)	683
SgrAI	CRCCGGYG	1 cut(s)	48
SinI	GGWCC	1 cut(s)	1272
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
SphI	GCATGC	1 cut(s)	895
Sse9I	AATT	6 cut(s)	78, 95, 784, 914, 950, 1054
SspI	AATATT	1 cut(s)	810
SspMI	CTAG	3 cut(s)	927, 1212, 1250
StyI	CCWWGG	2 cut(s)	413, 853
TaaI	ACNGT	3 cut(s)	488, 693, 1156
TaiI	ACGT	2 cut(s)	735, 1203
TaqI	TCGA	7 cut(s)	14, 68, 443, 757, 818, 1078, 1313
TaqII	GACCGA	2 cut(s)	743, 1253
TasI	AATT	6 cut(s)	78, 95, 784, 914, 950, 1054
TatI	WGTACW	2 cut(s)	285, 1156
TauI	GCSGC	2 cut(s)	23, 262
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	6 cut(s)	242, 480, 629, 747, 783, 941
Tru9I	TTAA	6 cut(s)	242, 480, 629, 747, 783, 941
TscAI	CASTG	2 cut(s)	571, 652
TseFI	GTSAC	2 cut(s)	195, 1033
TseI	GCWGC	3 cut(s)	43, 521, 674
Tsp45I	GTSAC	2 cut(s)	195, 1033
TspDTI	ATGAA	7 cut(s)	376, 602, 697, 912, 957, 990, 1048
TspGWI	ACGGA	1 cut(s)	43
TspRI	CASTG	2 cut(s)	571, 652
VpaK11BI	GGWCC	1 cut(s)	1272
XapI	RAATTY	4 cut(s)	78, 914, 950, 1054
XbaI	TCTAGA	1 cut(s)	926
XceI	RCATGY	2 cut(s)	196, 895
XspI	CTAG	3 cut(s)	927, 1212, 1250
ZrmI	AGTACT	1 cut(s)	1158
Zsp2I	ATGCAT	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.