Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037593.1

Orthogroup ID

OG0006111

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1793

Gene Structure 1792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037593.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 923 bp

atgtgtgtactctttatttccctttgggccggtctaaccacattatttattgggcctgggcttgatagtcgggcaggcctttttgctgcttctaatgttgatcggagtctccagctgccagttgcttcagagtccatgagcaattcaaccatggcggtcaaaccgtcgcggcgggcgaaatcgtcgcagcggcaccaaatttccaagccctggatccccacactgttccaaaaccctaaggtagcctccgcctccgctttgctcgtcttcgatgcggtcctcaccgccctcatcattgcctacgtcccttatacgaagatcgattgggacgcgtacatgtctcaggtcaatgggtttcttggtggagaaagagactatagtaacttgaaaggagacacagggccactggtgtatcctgctggttttttatatgcttattctgctattcagtatgttacaggaggccaagttcatccagctcagattttgtttggggttctgtacactataaacttgggaatcatgttttacatctatgtgaagactgatgtggttccatggtgggctcttgcgttgctttgtctatcaaaaagagtgcattctatttttgtgctccgactttttaatgactgtttggccatgttgctactgcatgcttcattagcctcatttcttcaccaaaggtggcatcttggattgatcattttcagcggtgctgtttcgataaagatgaatgtgctcctctatgctccacctcttctactcctcatgttaaaggctatggatatcagtggagtgatatcagctttgtttggtgcagctcttgtccagatactgctgggtttacctttcatcatgtctcatccatttgcatacatctcaggagcctttaatcttggccgtgtattcatccacttctggta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0000033 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071704 GO:0097502 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 map00510 map00513 map01100

Pfam Domains

Protein Families

ALG3

Protein Analysis

307

Amino Acids

33.83

Weight (kDa)

9.42

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47760 AT2G47760 AT2G47760 AT2G47760 AT2G47760
fragaria_vesca	FvH4_2g25370 FvH4_2g25370 FvH4_2g25370
malus_domestica	MD03G1285100.v1.1 MD03G1285200.v1.1 MD11G1304600.v1.1
prunus_persica	Prupe.8G258400_v2.0.a1
pyrus_communis	pycom03g22610 pycom11g26640
rosa_chinensis	RchiOBHm_Chr6g0293561
rosa_laevigata	RLG00000011941
rosa_multiflora	Rmu_co8425979.1_g000001 Rmu_sc0018527.1_g000001 Rmu_sc0037593.1_g000001
rosa_roxburghii	Rroxscaffold_7G00174090
rosa_rugosa	Rorug06G0236500 Rorug06G0236600.1
rosa_samantha	Rh6AG349200 Rh6BG356600 Rh6CG363300 Rh6DG350200
rosa_wichuraiana	Rw6G030380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	192
AccB7I	CCANNNNNTGG	1 cut(s)	210
AccII	CGCG	2 cut(s)	169, 332
AciI	CCGC	9 cut(s)	155, 169, 172, 190, 249, 255, 275, 285, 711
AclWI	GGATC	2 cut(s)	208, 221
AcoI	YGGCCR	2 cut(s)	636, 898
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	3 cut(s)	9, 335, 503
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflIII	ACRYGT	2 cut(s)	330, 336
AgsI	TTSAA	2 cut(s)	147, 388
AjnI	CCWGG	2 cut(s)	55, 209
AloI	GAACNNNNNNTCC	2 cut(s)	453, 485
AluBI	AGCT	4 cut(s)	115, 479, 806, 821
AluI	AGCT	4 cut(s)	115, 479, 806, 821
Alw21I	GWGCWC	2 cut(s)	615, 741
Alw26I	GTCTC	5 cut(s)	113, 345, 366, 387, 864
AlwI	GGATC	2 cut(s)	208, 221
AlwNI	CAGNNNCTG	1 cut(s)	835
AoxI	GGCC	7 cut(s)	27, 53, 76, 401, 463, 636, 898
ApeKI	GCWGC	4 cut(s)	86, 115, 187, 818
ApoI	RAATTY	1 cut(s)	198
AspS9I	GGNCC	4 cut(s)	27, 53, 277, 401
AsuHPI	GGTGA	2 cut(s)	274, 668
AvaII	GGWCC	1 cut(s)	277
AxyI	CCTNAGG	1 cut(s)	237
BaeI	ACNNNNGTAYC	2 cut(s)	395, 428
BalI	TGGCCA	1 cut(s)	638
BamHI	GGATCC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	568
BbsI	GAAGAC	2 cut(s)	259, 548
Bbv12I	GWGCWC	2 cut(s)	615, 741
BbvI	GCAGC	4 cut(s)	73, 102, 199, 830
BceAI	ACGGC	1 cut(s)	885
BciT130I	CCWGG	2 cut(s)	57, 211
BciVI	GTATCC	1 cut(s)	423
BclI	TGATCA	1 cut(s)	699
BcoDI	GTCTC	5 cut(s)	113, 345, 366, 387, 864
BfmI	CTRYAG	1 cut(s)	376
BfuI	GTATCC	1 cut(s)	423
BisI	GCNGC	6 cut(s)	87, 116, 170, 188, 191, 819
BlsI	GCNGC	6 cut(s)	88, 117, 171, 189, 192, 820
Bme1390I	CCNGG	2 cut(s)	57, 211
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	4 cut(s)	27, 53, 277, 401
BmiI	GGNNCC	4 cut(s)	194, 215, 555, 886
BmrFI	CCNGG	2 cut(s)	57, 211
BmsI	GCATC	2 cut(s)	262, 697
BpiI	GAAGAC	2 cut(s)	259, 548
BpmI	CTGGAG	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	321
BsaJI	CCNNGG	4 cut(s)	56, 150, 209, 557
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	119, 411
Bse21I	CCTNAGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	57, 211
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	4 cut(s)	56, 150, 209, 557
BseGI	GGATG	3 cut(s)	472, 862, 909
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	3 cut(s)	356, 494, 894
BseNI	ACTGG	2 cut(s)	119, 411
BseRI	GAGGAG	2 cut(s)	731, 755
BseXI	GCAGC	4 cut(s)	73, 102, 199, 830
BseYI	CCCAGC	1 cut(s)	838
BsgI	GTGCAG	1 cut(s)	837
Bsh1236I	CGCG	2 cut(s)	169, 332
BshFI	GGCC	7 cut(s)	29, 55, 78, 403, 465, 638, 900
BshNI	GGYRCC	1 cut(s)	192
BshVI	ATCGAT	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	615, 741
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	2 cut(s)	290, 341
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	5 cut(s)	113, 345, 366, 387, 864
BsmFI	GGGAC	2 cut(s)	290, 341
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	7 cut(s)	29, 55, 78, 403, 465, 638, 900
Bsp1286I	GDGCHC	3 cut(s)	568, 615, 741
Bsp1407I	TGTACA	1 cut(s)	501
Bsp143I	GATC	4 cut(s)	100, 213, 318, 699
Bsp19I	CCATGG	2 cut(s)	150, 557
BspACI	CCGC	9 cut(s)	155, 169, 172, 190, 249, 255, 275, 285, 711
BspANI	GGCC	7 cut(s)	29, 55, 78, 403, 465, 638, 900
BspCNI	CTCAG	3 cut(s)	355, 493, 893
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	2 cut(s)	169, 332
BspLI	GGNNCC	4 cut(s)	194, 215, 555, 886
BspPI	GGATC	2 cut(s)	208, 221
BspT107I	GGYRCC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	501
BsrI	ACTGG	2 cut(s)	119, 411
BssAI	RCCGGY	1 cut(s)	29
BssECI	CCNNGG	4 cut(s)	56, 150, 209, 557
BssMI	GATC	4 cut(s)	100, 213, 318, 699
BssT1I	CCWWGG	2 cut(s)	150, 557
Bst2UI	CCWGG	2 cut(s)	57, 211
Bst4CI	ACNGT	3 cut(s)	165, 225, 632
Bst6I	CTCTTC	1 cut(s)	762
BstAUI	TGTACA	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	76, 174, 654
BstDEI	CTNAG	4 cut(s)	237, 342, 480, 880
BstDSI	CCRYGG	2 cut(s)	150, 557
BstF5I	GGATG	3 cut(s)	472, 862, 909
BstFNI	CGCG	2 cut(s)	169, 332
BstKTI	GATC	4 cut(s)	103, 216, 321, 702
BstMAI	GTCTC	5 cut(s)	113, 345, 366, 387, 864
BstMBI	GATC	4 cut(s)	100, 213, 318, 699
BstMWI	GCNNNNNNNGC	2 cut(s)	440, 662
BstNI	CCWGG	2 cut(s)	57, 211
BstNSI	RCATGY	2 cut(s)	340, 656
BstSCI	CCNGG	2 cut(s)	55, 209
BstSFI	CTRYAG	1 cut(s)	376
BstUI	CGCG	2 cut(s)	169, 332
BstV1I	GCAGC	4 cut(s)	73, 102, 199, 830
BstV2I	GAAGAC	2 cut(s)	259, 548
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	321
Bsu36I	CCTNAGG	1 cut(s)	237
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	7 cut(s)	29, 55, 78, 403, 465, 638, 900
BsuTUI	ATCGAT	1 cut(s)	321
BtgI	CCRYGG	2 cut(s)	150, 557
BtsCI	GGATG	3 cut(s)	472, 862, 909
BtsIMutI	CAGTG	3 cut(s)	221, 404, 796
Cac8I	GCNNGC	3 cut(s)	76, 174, 654
CaiI	CAGNNNCTG	1 cut(s)	835
Cfr10I	RCCGGY	1 cut(s)	29
Cfr13I	GGNCC	4 cut(s)	27, 53, 277, 401
ClaI	ATCGAT	1 cut(s)	321
CseI	GACGC	1 cut(s)	338
Csp6I	GTAC	3 cut(s)	8, 334, 502
CviAII	CATG	9 cut(s)	136, 151, 337, 523, 558, 640, 653, 769, 856
CviQI	GTAC	3 cut(s)	8, 334, 502
DdeI	CTNAG	4 cut(s)	237, 342, 480, 880
DpnI	GATC	4 cut(s)	102, 215, 320, 701
DpnII	GATC	4 cut(s)	100, 213, 318, 699
EaeI	YGGCCR	2 cut(s)	636, 898
Eam1104I	CTCTTC	1 cut(s)	762
EarI	CTCTTC	1 cut(s)	762
EciI	GGCGGA	1 cut(s)	238
Eco130I	CCWWGG	2 cut(s)	150, 557
Eco147I	AGGCCT	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	568
Eco32I	GATATC	2 cut(s)	787, 801
Eco47I	GGWCC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	237
EcoRII	CCWGG	2 cut(s)	55, 209
EcoRV	GATATC	2 cut(s)	787, 801
EcoT14I	CCWWGG	2 cut(s)	150, 557
EcoT38I	GRGCYC	1 cut(s)	568
ErhI	CCWWGG	2 cut(s)	150, 557
FaeI	CATG	9 cut(s)	139, 154, 340, 526, 561, 643, 656, 772, 859
FaqI	GGGAC	2 cut(s)	290, 341
FatI	CATG	9 cut(s)	135, 150, 336, 522, 557, 639, 652, 768, 855
FauI	CCCGC	1 cut(s)	165
FbaI	TGATCA	1 cut(s)	699
Fnu4HI	GCNGC	6 cut(s)	87, 116, 170, 188, 191, 819
FokI	GGATG	3 cut(s)	459, 849, 896
FriOI	GRGCYC	1 cut(s)	568
Fsp4HI	GCNGC	6 cut(s)	87, 116, 170, 188, 191, 819
GluI	GCNGC	6 cut(s)	87, 116, 170, 188, 191, 819
GsaI	CCCAGC	1 cut(s)	842
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	7 cut(s)	29, 55, 78, 403, 465, 638, 900
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	338
Hin1II	CATG	9 cut(s)	139, 154, 340, 526, 561, 643, 656, 772, 859
HinfI	GANTC	3 cut(s)	106, 131, 519
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	274, 668
Hpy166II	GTNNAC	3 cut(s)	8, 504, 845
Hpy188I	TCNGA	4 cut(s)	105, 130, 483, 617
Hpy188III	TCNNGA	2 cut(s)	829, 882
Hpy8I	GTNNAC	3 cut(s)	8, 504, 845
Hpy99I	CGWCG	2 cut(s)	169, 187
HpyCH4III	ACNGT	3 cut(s)	165, 225, 632
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	4 cut(s)	598, 652, 818, 872
HpyF10VI	GCNNNNNNNGC	2 cut(s)	440, 662
HpyF3I	CTNAG	4 cut(s)	237, 342, 480, 880
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	9 cut(s)	139, 154, 340, 526, 561, 643, 656, 772, 859
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	4 cut(s)	100, 213, 318, 699
LmnI	GCTCC	4 cut(s)	618, 744, 754, 884
Lsp1109I	GCAGC	4 cut(s)	73, 102, 199, 830
LweI	GCATC	2 cut(s)	262, 697
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	2 cut(s)	380, 454
MalI	GATC	4 cut(s)	102, 215, 320, 701
MboI	GATC	4 cut(s)	100, 213, 318, 699
MboII	GAAGA	5 cut(s)	259, 328, 553, 665, 749
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	3 cut(s)	568, 615, 741
MlsI	TGGCCA	1 cut(s)	638
MluCI	AATT	2 cut(s)	142, 198
MluI	ACGCGT	1 cut(s)	330
MluNI	TGGCCA	1 cut(s)	638
MlyI	GAGTC	2 cut(s)	115, 140
MmeI	TCCRAC	1 cut(s)	640
MnlI	CCTC	9 cut(s)	256, 262, 290, 299, 455, 676, 752, 765, 776
Mox20I	TGGCCA	1 cut(s)	638
MscI	TGGCCA	1 cut(s)	638
MseI	TTAA	3 cut(s)	624, 773, 891
MslI	CAYNNNNRTG	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	638
MspA1I	CMGCKG	3 cut(s)	115, 190, 711
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	2 cut(s)	57, 211
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	2 cut(s)	57, 211
MvnI	CGCG	2 cut(s)	169, 332
MwoI	GCNNNNNNNGC	2 cut(s)	440, 662
NcoI	CCATGG	2 cut(s)	150, 557
NdeII	GATC	4 cut(s)	100, 213, 318, 699
NlaIII	CATG	9 cut(s)	139, 154, 340, 526, 561, 643, 656, 772, 859
NlaIV	GGNNCC	4 cut(s)	194, 215, 555, 886
NspI	RCATGY	2 cut(s)	340, 656
PaeI	GCATGC	1 cut(s)	656
PceI	AGGCCT	1 cut(s)	78
PciI	ACATGT	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	173
PctI	GAATGC	1 cut(s)	598
PfeI	GAWTC	1 cut(s)	519
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	6 cut(s)	88, 117, 171, 189, 192, 820
PleI	GAGTC	2 cut(s)	114, 139
PpsI	GAGTC	2 cut(s)	114, 139
PscI	ACATGT	1 cut(s)	336
Psp6I	CCWGG	2 cut(s)	55, 209
PspFI	CCCAGC	1 cut(s)	838
PspGI	CCWGG	2 cut(s)	55, 209
PspN4I	GGNNCC	4 cut(s)	194, 215, 555, 886
PspPI	GGNCC	4 cut(s)	27, 53, 277, 401
PstNI	CAGNNNCTG	1 cut(s)	835
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	3 cut(s)	9, 335, 503
RsaNI	GTAC	3 cut(s)	8, 334, 502
RseI	CAYNNNNRTG	1 cut(s)	536
SaqAI	TTAA	3 cut(s)	624, 773, 891
SatI	GCNGC	6 cut(s)	87, 116, 170, 188, 191, 819
Sau3AI	GATC	4 cut(s)	100, 213, 318, 699
Sau96I	GGNCC	4 cut(s)	27, 53, 277, 401
SchI	GAGTC	2 cut(s)	115, 140
ScrFI	CCNGG	2 cut(s)	57, 211
SduI	GDGCHC	3 cut(s)	568, 615, 741
SfaNI	GCATC	2 cut(s)	262, 697
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	536
SphI	GCATGC	1 cut(s)	656
Sse9I	AATT	2 cut(s)	142, 198
SseBI	AGGCCT	1 cut(s)	78
SsiI	CCGC	9 cut(s)	155, 169, 172, 190, 249, 255, 275, 285, 711
StuI	AGGCCT	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	55, 209
StyI	CCWWGG	2 cut(s)	150, 557
TaaI	ACNGT	3 cut(s)	165, 225, 632
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	270, 321, 722
TasI	AATT	2 cut(s)	142, 198
TatI	WGTACW	2 cut(s)	7, 501
TauI	GCSGC	2 cut(s)	172, 193
TfiI	GAWTC	1 cut(s)	519
Tru1I	TTAA	3 cut(s)	624, 773, 891
Tru9I	TTAA	3 cut(s)	624, 773, 891
TscAI	CASTG	3 cut(s)	228, 411, 796
TseI	GCWGC	4 cut(s)	86, 115, 187, 818
TspDTI	ATGAA	5 cut(s)	461, 648, 746, 841, 898
TspRI	CASTG	3 cut(s)	228, 411, 796
Van91I	CCANNNNNTGG	1 cut(s)	210
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	198
XceI	RCATGY	2 cut(s)	340, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.