Rh6DG350200
NAC Family

Dol-P-Man Man(5)GlcNAc(2)-PP-Dol

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006111
Physical Location & Seq
Reverse (-)
55083801 .. 55087223
3423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG350200.1

Sequence Viewer

Length: 1089 bp
ATGAGCAATTCAACCATGGCGGTCAAACCGGCGCGGCGGGCGAAATCGTCGCAGCGGCACCAAATTTCCAAGCCCTGGATCCCCACGCTGTTCCAAAACCCTAAGGTAGCCTCCGCCTCCGCTTTGCTCGTCTTCGATGCGGTCCTCACCGCCCTCATCATTGCCTACGTCCCTTATACGAAGATCGATTGGGACGCGTACATGTCTCAGGTCAATGGGTTTCTTGGTGGAGAAAGAGACTTTAGTAACTTGAAAGGAGACACAGGGCCACTGGTGTATCCTGCTGGTTTTTTATATGCTTACTCTGCTATTCAGTACGTTACAGGAAGCCAAGTTCATCCAGCTCAGATTTTGTTTGGGGTTCTGTACATTATAAACTTGGGAATCATGTTTTACATCTATGTGAAGACTGATGTGGTTCCATGGTGGGCTCTTGCGTTGCTTTGTCTATCAAAAAGAGTGCATTCTATTTTTGTGCTCCGACTTTTTAATGACTGTTTGGCCATGTTGCTACTGGATGCTTCATTAGCCTCATTTCTTCACCAAAGGTGGCATCTAGGATTGATCATTTTCAGTGGTGCTGTTTCGATAAAGATGAATGTGCTCCTCTATGCTCCACCTCTTCTACTCCTCATGTTAAAGGCTATGGATATCAGTGGAGTGATATCAGCTTTGTTTGGTGCAGCTCTTCTCCAGATACTGCTGGGGTTACCTTTCATCATGTCTCATCCATTTGCATACATCTCAAGAGCCTTTAATCTTGGCCGTGTATTCATCCACTTCTGGTCTGTTAATTTCAAGTTCCTTCCTGAGCCAATATTTGTCTCCAAGGCATTTGCGATCTCTTTGCTGGTTGTACACCTTGTTTTACTTGCAGCTTTTGCGCACTATAGATGGTGCAAGCATGAAGGAGGAGTTTTCAAATTTTTGTATTCGAGACTTGTTTCTATAAAACTCAAATTTGCTCTTACAAATACCCATTCCTACAAGGCTCTTAAGAAAGAACATATTCTGACAACTATGTTCGTTGGAAATTTCATTGGCATTCTATGTGCCCGATCACTACATTATCAATTCTACTCTTGGTAA

Protein Analysis

362

Amino Acids

40.82

Weight (kDa)

9.78

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALG3 PF05208 41 - 362 1e-119 ALG3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
Acc16I TGCGCA 1 cut(s) 885
AccB1I GGYRCC 1 cut(s) 57
AccB7I CCANNNNNTGG 1 cut(s) 75
AccII CGCG 2 cut(s) 34, 197
AciI CCGC 8 cut(s) 20, 34, 37, 55, 114, 120, 140, 150
AclWI GGATC 2 cut(s) 73, 86
AcoI YGGCCR 2 cut(s) 501, 763
AcsI RAATTY 4 cut(s) 63, 923, 959, 1033
AfaI GTAC 4 cut(s) 200, 317, 368, 858
AfiI CCNNNNNNNGG 1 cut(s) 75
AflII CTTAAG 1 cut(s) 995
AflIII ACRYGT 2 cut(s) 195, 201
AgsI TTSAA 4 cut(s) 12, 253, 799, 922
AjnI CCWGG 1 cut(s) 74
AloI GAACNNNNNNTCC 2 cut(s) 318, 350
AluBI AGCT 4 cut(s) 344, 671, 686, 878
AluI AGCT 4 cut(s) 344, 671, 686, 878
Alw21I GWGCWC 2 cut(s) 480, 606
Alw26I GTCTC 6 cut(s) 210, 231, 252, 729, 829, 931
AlwI GGATC 2 cut(s) 73, 86
AlwNI CAGNNNCTG 1 cut(s) 700
AoxI GGCC 3 cut(s) 266, 501, 763
ApeKI GCWGC 3 cut(s) 52, 683, 875
ApoI RAATTY 4 cut(s) 63, 923, 959, 1033
Asp700I GAANNNNTTC 1 cut(s) 1008
AspLEI GCGC 2 cut(s) 34, 886
AspS9I GGNCC 2 cut(s) 142, 266
AsuHPI GGTGA 2 cut(s) 139, 533
AvaII GGWCC 1 cut(s) 142
AxyI CCTNAGG 1 cut(s) 102
BaeGI GKGCMC 1 cut(s) 1057
BaeI ACNNNNGTAYC 2 cut(s) 260, 293
BalI TGGCCA 1 cut(s) 503
BamHI GGATCC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 433
BbsI GAAGAC 2 cut(s) 124, 413
Bbv12I GWGCWC 2 cut(s) 480, 606
BbvI GCAGC 3 cut(s) 64, 695, 887
BccI CCATC 1 cut(s) 888
BceAI ACGGC 1 cut(s) 750
BcgI CGANNNNNNTGC 2 cut(s) 829, 863
BciT130I CCWGG 1 cut(s) 76
BciVI GTATCC 1 cut(s) 288
BclI TGATCA 1 cut(s) 564
BcoDI GTCTC 6 cut(s) 210, 231, 252, 729, 829, 931
BfaI CTAG 1 cut(s) 557
BfmI CTRYAG 1 cut(s) 889
BfrI CTTAAG 1 cut(s) 995
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 5 cut(s) 35, 53, 56, 684, 876
BlsI GCNGC 5 cut(s) 36, 54, 57, 685, 877
Bme1390I CCNGG 1 cut(s) 76
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 142, 266
BmiI GGNNCC 3 cut(s) 59, 80, 420
BmrFI CCNGG 1 cut(s) 76
BmsI GCATC 3 cut(s) 127, 508, 562
BpiI GAAGAC 2 cut(s) 124, 413
BpmI CTGGAG 1 cut(s) 677
Bpu10I CCTNAGC 1 cut(s) 810
BpuEI CTTGAG 1 cut(s) 730
Bsa29I ATCGAT 1 cut(s) 186
BsaJI CCNNGG 4 cut(s) 15, 74, 422, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse118I RCCGGY 1 cut(s) 28
Bse1I ACTGG 2 cut(s) 276, 519
Bse21I CCTNAGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 159
BseBI CCWGG 1 cut(s) 76
BseCI ATCGAT 1 cut(s) 186
BseDI CCNNGG 4 cut(s) 15, 74, 422, 828
BseGI GGATG 4 cut(s) 337, 523, 727, 774
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 159
BseMII CTCAG 3 cut(s) 221, 359, 801
BseNI ACTGG 2 cut(s) 276, 519
BseRI GAGGAG 3 cut(s) 596, 620, 927
BseSI GKGCMC 1 cut(s) 1057
BseXI GCAGC 3 cut(s) 64, 695, 887
BseYI CCCAGC 1 cut(s) 703
BsgI GTGCAG 1 cut(s) 702
Bsh1236I CGCG 2 cut(s) 34, 197
BshFI GGCC 3 cut(s) 268, 503, 765
BshNI GGYRCC 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 186
BsiHKAI GWGCWC 2 cut(s) 480, 606
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 2 cut(s) 155, 206
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 6 cut(s) 210, 231, 252, 729, 829, 931
BsmFI GGGAC 2 cut(s) 155, 206
BsmI GAATGC 2 cut(s) 463, 1044
BsnI GGCC 3 cut(s) 268, 503, 765
Bsp1286I GDGCHC 4 cut(s) 433, 480, 606, 1057
Bsp1407I TGTACA 2 cut(s) 366, 856
Bsp143I GATC 5 cut(s) 78, 183, 564, 840, 1058
Bsp19I CCATGG 2 cut(s) 15, 422
BspACI CCGC 8 cut(s) 20, 34, 37, 55, 114, 120, 140, 150
BspANI GGCC 3 cut(s) 268, 503, 765
BspCNI CTCAG 3 cut(s) 220, 358, 802
BspDI ATCGAT 1 cut(s) 186
BspFNI CGCG 2 cut(s) 34, 197
BspLI GGNNCC 3 cut(s) 59, 80, 420
BspPI GGATC 2 cut(s) 73, 86
BspQI GCTCTTC 1 cut(s) 693
BspT107I GGYRCC 1 cut(s) 57
BspTI CTTAAG 1 cut(s) 995
BsrDI GCAATG 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 28
BsrGI TGTACA 2 cut(s) 366, 856
BsrI ACTGG 2 cut(s) 276, 519
BssAI RCCGGY 1 cut(s) 28
BssECI CCNNGG 4 cut(s) 15, 74, 422, 828
BssMI GATC 5 cut(s) 78, 183, 564, 840, 1058
BssT1I CCWWGG 3 cut(s) 15, 422, 828
Bst2UI CCWGG 1 cut(s) 76
Bst4CI ACNGT 1 cut(s) 497
Bst6I CTCTTC 2 cut(s) 627, 693
BstAFI CTTAAG 1 cut(s) 995
BstAPI GCANNNNNTGC 1 cut(s) 881
BstAUI TGTACA 2 cut(s) 366, 856
BstC8I GCNNGC 2 cut(s) 39, 902
BstDEI CTNAG 4 cut(s) 102, 207, 345, 810
BstDSI CCRYGG 2 cut(s) 15, 422
BstEII GGTNACC 1 cut(s) 708
BstF5I GGATG 4 cut(s) 337, 523, 727, 774
BstFNI CGCG 2 cut(s) 34, 197
BstHHI GCGC 2 cut(s) 34, 886
BstKTI GATC 5 cut(s) 81, 186, 567, 843, 1061
BstMAI GTCTC 6 cut(s) 210, 231, 252, 729, 829, 931
BstMBI GATC 5 cut(s) 78, 183, 564, 840, 1058
BstMWI GCNNNNNNNGC 4 cut(s) 38, 305, 527, 881
BstNI CCWGG 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 708
BstSCI CCNGG 1 cut(s) 74
BstSFI CTRYAG 1 cut(s) 889
BstSLI GKGCMC 1 cut(s) 1057
BstUI CGCG 2 cut(s) 34, 197
BstV1I GCAGC 3 cut(s) 64, 695, 887
BstV2I GAAGAC 2 cut(s) 124, 413
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
Bsu15I ATCGAT 1 cut(s) 186
Bsu36I CCTNAGG 1 cut(s) 102
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 3 cut(s) 268, 503, 765
BsuTUI ATCGAT 1 cut(s) 186
BtgI CCRYGG 2 cut(s) 15, 422
BtsCI GGATG 4 cut(s) 337, 523, 727, 774
BtsIMutI CAGTG 3 cut(s) 269, 580, 661
Cac8I GCNNGC 2 cut(s) 39, 902
CaiI CAGNNNCTG 1 cut(s) 700
CfoI GCGC 2 cut(s) 34, 886
Cfr10I RCCGGY 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 142, 266
ClaI ATCGAT 1 cut(s) 186
CseI GACGC 1 cut(s) 203
Csp6I GTAC 4 cut(s) 199, 316, 367, 857
CviAII CATG 8 cut(s) 16, 202, 388, 423, 505, 634, 721, 905
CviQI GTAC 4 cut(s) 199, 316, 367, 857
DdeI CTNAG 4 cut(s) 102, 207, 345, 810
DpnI GATC 5 cut(s) 80, 185, 566, 842, 1060
DpnII GATC 5 cut(s) 78, 183, 564, 840, 1058
EaeI YGGCCR 2 cut(s) 501, 763
Eam1104I CTCTTC 2 cut(s) 627, 693
EarI CTCTTC 2 cut(s) 627, 693
EciI GGCGGA 1 cut(s) 103
Eco130I CCWWGG 3 cut(s) 15, 422, 828
Eco24I GRGCYC 1 cut(s) 433
Eco32I GATATC 2 cut(s) 652, 666
Eco47I GGWCC 1 cut(s) 142
Eco81I CCTNAGG 1 cut(s) 102
Eco91I GGTNACC 1 cut(s) 708
EcoO65I GGTNACC 1 cut(s) 708
EcoRII CCWGG 1 cut(s) 74
EcoRV GATATC 2 cut(s) 652, 666
EcoT14I CCWWGG 3 cut(s) 15, 422, 828
EcoT38I GRGCYC 1 cut(s) 433
ErhI CCWWGG 3 cut(s) 15, 422, 828
FaeI CATG 8 cut(s) 19, 205, 391, 426, 508, 637, 724, 908
FaqI GGGAC 2 cut(s) 155, 206
FatI CATG 8 cut(s) 15, 201, 387, 422, 504, 633, 720, 904
FauI CCCGC 1 cut(s) 30
FbaI TGATCA 1 cut(s) 564
Fnu4HI GCNGC 5 cut(s) 35, 53, 56, 684, 876
FokI GGATG 4 cut(s) 324, 530, 714, 761
FriOI GRGCYC 1 cut(s) 433
Fsp4HI GCNGC 5 cut(s) 35, 53, 56, 684, 876
FspBI CTAG 1 cut(s) 557
FspI TGCGCA 1 cut(s) 885
GlaI GCGC 2 cut(s) 33, 885
GluI GCNGC 5 cut(s) 35, 53, 56, 684, 876
GsaI CCCAGC 1 cut(s) 707
GsuI CTGGAG 1 cut(s) 677
HaeIII GGCC 3 cut(s) 268, 503, 765
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 203
HhaI GCGC 2 cut(s) 34, 886
Hin1II CATG 8 cut(s) 19, 205, 391, 426, 508, 637, 724, 908
Hin6I GCGC 2 cut(s) 32, 884
HinP1I GCGC 2 cut(s) 32, 884
HinfI GANTC 1 cut(s) 384
HpaII CCGG 1 cut(s) 29
HphI GGTGA 2 cut(s) 139, 533
Hpy166II GTNNAC 1 cut(s) 859
Hpy188I TCNGA 3 cut(s) 348, 482, 1014
Hpy188III TCNNGA 4 cut(s) 694, 747, 809, 936
Hpy8I GTNNAC 1 cut(s) 859
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 2 cut(s) 815, 902
HpyCH4III ACNGT 1 cut(s) 497
HpyCH4IV ACGT 2 cut(s) 168, 318
HpyCH4V TGCA 5 cut(s) 463, 683, 737, 875, 900
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 305, 527, 881
HpyF3I CTNAG 4 cut(s) 102, 207, 345, 810
HpySE526I ACGT 2 cut(s) 168, 318
Hsp92II CATG 8 cut(s) 19, 205, 391, 426, 508, 637, 724, 908
HspAI GCGC 2 cut(s) 32, 884
Ksp22I TGATCA 1 cut(s) 564
Kzo9I GATC 5 cut(s) 78, 183, 564, 840, 1058
LguI GCTCTTC 1 cut(s) 693
LmnI GCTCC 3 cut(s) 483, 609, 619
Lsp1109I GCAGC 3 cut(s) 64, 695, 887
LweI GCATC 3 cut(s) 127, 508, 562
MaeI CTAG 1 cut(s) 557
MaeII ACGT 2 cut(s) 168, 318
MaeIII GTNAC 3 cut(s) 245, 319, 708
MalI GATC 5 cut(s) 80, 185, 566, 842, 1060
MboI GATC 5 cut(s) 78, 183, 564, 840, 1058
MboII GAAGA 6 cut(s) 124, 193, 418, 530, 614, 680
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 4 cut(s) 433, 480, 606, 1057
MlsI TGGCCA 1 cut(s) 503
MluCI AATT 7 cut(s) 7, 63, 793, 923, 959, 1033, 1073
MluI ACGCGT 1 cut(s) 195
MluNI TGGCCA 1 cut(s) 503
MmeI TCCRAC 2 cut(s) 505, 1009
MnlI CCTC 9 cut(s) 121, 127, 155, 164, 541, 617, 630, 641, 905
Mox20I TGGCCA 1 cut(s) 503
MroXI GAANNNNTTC 1 cut(s) 1008
MscI TGGCCA 1 cut(s) 503
MseI TTAA 5 cut(s) 489, 638, 756, 792, 996
MslI CAYNNNNRTG 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 503
MspA1I CMGCKG 1 cut(s) 55
MspCI CTTAAG 1 cut(s) 995
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 76
Mva1269I GAATGC 2 cut(s) 463, 1044
MvaI CCWGG 1 cut(s) 76
MvnI CGCG 2 cut(s) 34, 197
MwoI GCNNNNNNNGC 4 cut(s) 38, 305, 527, 881
NcoI CCATGG 2 cut(s) 15, 422
NdeII GATC 5 cut(s) 78, 183, 564, 840, 1058
NlaIII CATG 8 cut(s) 19, 205, 391, 426, 508, 637, 724, 908
NlaIV GGNNCC 3 cut(s) 59, 80, 420
NsbI TGCGCA 1 cut(s) 885
NspI RCATGY 1 cut(s) 205
PciI ACATGT 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 693
PctI GAATGC 2 cut(s) 463, 1044
PdmI GAANNNNTTC 1 cut(s) 1008
PfeI GAWTC 1 cut(s) 384
PflMI CCANNNNNTGG 1 cut(s) 75
PkrI GCNGC 5 cut(s) 36, 54, 57, 685, 877
PscI ACATGT 1 cut(s) 201
PsiI TTATAA 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 74
PspEI GGTNACC 1 cut(s) 708
PspFI CCCAGC 1 cut(s) 703
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 3 cut(s) 59, 80, 420
PspPI GGNCC 2 cut(s) 142, 266
PstNI CAGNNNCTG 1 cut(s) 700
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 4 cut(s) 200, 317, 368, 858
RsaNI GTAC 4 cut(s) 199, 316, 367, 857
RseI CAYNNNNRTG 1 cut(s) 401
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 5 cut(s) 489, 638, 756, 792, 996
SatI GCNGC 5 cut(s) 35, 53, 56, 684, 876
Sau3AI GATC 5 cut(s) 78, 183, 564, 840, 1058
Sau96I GGNCC 2 cut(s) 142, 266
ScrFI CCNGG 1 cut(s) 76
SduI GDGCHC 4 cut(s) 433, 480, 606, 1057
SfaNI GCATC 3 cut(s) 127, 508, 562
SfcI CTRYAG 1 cut(s) 889
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 745, 995
SmoI CTYRAG 2 cut(s) 745, 995
Sse9I AATT 7 cut(s) 7, 63, 793, 923, 959, 1033, 1073
SsiI CCGC 8 cut(s) 20, 34, 37, 55, 114, 120, 140, 150
SspI AATATT 1 cut(s) 819
SspMI CTAG 1 cut(s) 557
StyD4I CCNGG 1 cut(s) 74
StyI CCWWGG 3 cut(s) 15, 422, 828
TaaI ACNGT 1 cut(s) 497
TaiI ACGT 2 cut(s) 171, 321
TaqI TCGA 4 cut(s) 135, 186, 587, 935
TasI AATT 7 cut(s) 7, 63, 793, 923, 959, 1033, 1073
TatI WGTACW 2 cut(s) 366, 856
TauI GCSGC 2 cut(s) 37, 58
TfiI GAWTC 1 cut(s) 384
Tru1I TTAA 5 cut(s) 489, 638, 756, 792, 996
Tru9I TTAA 5 cut(s) 489, 638, 756, 792, 996
TscAI CASTG 3 cut(s) 276, 580, 661
TseI GCWGC 3 cut(s) 52, 683, 875
TspDTI ATGAA 7 cut(s) 326, 513, 611, 706, 763, 921, 1027
TspRI CASTG 3 cut(s) 276, 580, 661
Van91I CCANNNNNTGG 1 cut(s) 75
Vha464I CTTAAG 1 cut(s) 995
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 4 cut(s) 63, 923, 959, 1033
XceI RCATGY 1 cut(s) 205
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XmnI GAANNNNTTC 1 cut(s) 1008
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.