AT2G48070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012247
Physical Location & Seq
Forward (+)
19662715 .. 19664465
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G48070.3

Sequence Viewer

Length: 594 bp
ATGAGTTGGTCTCTCTGCAGCACCCATGGGGTCTCCTCTTCCATAGCTCTCACTTATGGCTTTCGCCATAGAAGAAGATCCACCTTCCGTATTTTCGCCACCTCTGACGGATTAGAACCCAAGGACGACCCGCCGGAATCTCCTCTCCCTTCCTCATCCTCTGCTCTCGGTAAAGACTTGAAAAAGGTTGTTAACAAGACTGCTGCAACCTTTGCCCCTAGAGCTTCCACCGCCAGTAAAAACCCTGCTCTCCCTGGAACTACTCTTTACAAAGTTTTTGAGGTTCAAGGCTATGCATCGATGTTCCTCGGAGGTGTCCTTTCTTTCAACCTCCTCTTTCCCTCCAGCGAACCTGATTTATGGAGGTTGATGGGCATGTGGTCCATTTGGATGTTCACTATTCCTTCTCTTCGGGCACGAGACTGTCCAAGTAAAGAGAAAGAGGCTCTTAACTACCTCTTTCTCATCGTCCCCTTGCTCAATGTTGCTATTCCCTTCTTTTGGAAATCATTTGCTCTTGTCTGGTCTGCTGACACGGTTGCCTTCTTTGCTATGTATGCCTGGAAGCTTGGATGGCTGGAAAGAACAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.09

Weight (kDa)

9.45

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012247)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48070 AT2G48070 AT2G48070
fragaria_vesca FvH4_2g24170
malus_domestica MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica Prupe.8G247900_v2.0.a1
pyrus_communis pycom03g21620
rosa_chinensis RchiOBHm_Chr6g0291981
rosa_laevigata RLG00000012073
rosa_multiflora Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii Rroxscaffold_7G00175520
rosa_rugosa Rorug06G0222200
rosa_samantha Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana Rw6G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 131, 231
AclWI GGATC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 501
AgsI TTSAA 3 cut(s) 181, 287, 328
AjnI CCWGG 2 cut(s) 253, 560
AluBI AGCT 3 cut(s) 47, 224, 568
AluI AGCT 3 cut(s) 47, 224, 568
Alw26I GTCTC 3 cut(s) 15, 37, 414
AlwI GGATC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 18, 203
AspS9I GGNCC 1 cut(s) 381
AvaII GGWCC 1 cut(s) 381
BaeGI GKGCMC 1 cut(s) 418
BauI CACGAG 1 cut(s) 417
BbvI GCAGC 2 cut(s) 30, 190
BccI CCATC 2 cut(s) 364, 567
BciT130I CCWGG 2 cut(s) 255, 562
BcoDI GTCTC 3 cut(s) 15, 37, 414
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 16
BisI GCNGC 2 cut(s) 19, 204
BlsI GCNGC 2 cut(s) 20, 205
Bme1390I CCNGG 2 cut(s) 255, 562
Bme18I GGWCC 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 381
BmrFI CCNGG 2 cut(s) 255, 562
BmsI GCATC 1 cut(s) 305
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 328
Bsa29I ATCGAT 1 cut(s) 299
BsaI GGTCTC 2 cut(s) 15, 37
BsaJI CCNNGG 4 cut(s) 25, 120, 253, 307
Bsc4I CCNNNNNNNGG 1 cut(s) 501
Bse1I ACTGG 1 cut(s) 234
BseBI CCWGG 2 cut(s) 255, 562
BseCI ATCGAT 1 cut(s) 299
BseDI CCNNGG 4 cut(s) 25, 120, 253, 307
BseGI GGATG 3 cut(s) 155, 396, 578
BseLI CCNNNNNNNGG 1 cut(s) 501
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 3 cut(s) 25, 132, 323
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 2 cut(s) 30, 190
BshVI ATCGAT 1 cut(s) 299
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 501
BsmAI GTCTC 3 cut(s) 15, 37, 414
BsmFI GGGAC 1 cut(s) 455
Bso31I GGTCTC 2 cut(s) 15, 37
Bsp1286I GDGCHC 1 cut(s) 418
Bsp143I GATC 1 cut(s) 77
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 2 cut(s) 131, 231
BspDI ATCGAT 1 cut(s) 299
BspMAI CTGCAG 1 cut(s) 20
BspPI GGATC 1 cut(s) 72
BspTNI GGTCTC 2 cut(s) 15, 37
BsrI ACTGG 1 cut(s) 234
BssECI CCNNGG 4 cut(s) 25, 120, 253, 307
BssMI GATC 1 cut(s) 77
BssSI CACGAG 1 cut(s) 417
BssT1I CCWWGG 2 cut(s) 25, 120
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 2 cut(s) 255, 562
Bst4CI ACNGT 2 cut(s) 425, 538
Bst6I CTCTTC 2 cut(s) 43, 414
BstAPI GCANNNNNTGC 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 3 cut(s) 155, 396, 578
BstKTI GATC 1 cut(s) 80
BstMAI GTCTC 3 cut(s) 15, 37, 414
BstMBI GATC 1 cut(s) 77
BstMWI GCNNNNNNNGC 6 cut(s) 212, 221, 230, 548, 557, 574
BstNI CCWGG 2 cut(s) 255, 562
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 253, 560
BstSFI CTRYAG 1 cut(s) 16
BstSLI GKGCMC 1 cut(s) 418
BstV1I GCAGC 2 cut(s) 30, 190
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
Bsu15I ATCGAT 1 cut(s) 299
BsuTUI ATCGAT 1 cut(s) 299
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 3 cut(s) 155, 396, 578
Cfr13I GGNCC 1 cut(s) 381
ClaI ATCGAT 1 cut(s) 299
CviAII CATG 2 cut(s) 26, 376
CviJI RGCY 7 cut(s) 47, 60, 224, 291, 446, 568, 577
CviKI_1 RGCY 7 cut(s) 47, 60, 224, 291, 446, 568, 577
DpnI GATC 1 cut(s) 79
DpnII GATC 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 43, 414
EarI CTCTTC 2 cut(s) 43, 414
Eco130I CCWWGG 2 cut(s) 25, 120
Eco31I GGTCTC 2 cut(s) 15, 37
Eco47I GGWCC 1 cut(s) 381
EcoRII CCWGG 2 cut(s) 253, 560
EcoT14I CCWWGG 2 cut(s) 25, 120
EcoT22I ATGCAT 1 cut(s) 298
ErhI CCWWGG 2 cut(s) 25, 120
FaeI CATG 2 cut(s) 29, 379
FaiI YATR 9 cut(s) 27, 44, 57, 69, 294, 361, 377, 554, 558
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 1 cut(s) 455
FatI CATG 2 cut(s) 25, 375
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 2 cut(s) 19, 204
FokI GGATG 3 cut(s) 142, 403, 585
Fsp4HI GCNGC 2 cut(s) 19, 204
FspBI CTAG 1 cut(s) 219
GluI GCNGC 2 cut(s) 19, 204
GsuI CTGGAG 1 cut(s) 328
HapII CCGG 1 cut(s) 134
Hin1II CATG 2 cut(s) 29, 379
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 1 cut(s) 137
HpaI GTTAAC 1 cut(s) 193
HpaII CCGG 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 193, 396
Hpy188I TCNGA 2 cut(s) 106, 311
Hpy8I GTNNAC 2 cut(s) 193, 396
HpyAV CCTTC 5 cut(s) 94, 159, 414, 505, 553
HpyCH4III ACNGT 2 cut(s) 425, 538
HpyCH4V TGCA 3 cut(s) 18, 206, 296
HpyF10VI GCNNNNNNNGC 6 cut(s) 212, 221, 230, 548, 557, 574
Hsp92II CATG 2 cut(s) 29, 379
KspAI GTTAAC 1 cut(s) 193
Kzo9I GATC 1 cut(s) 77
Lsp1109I GCAGC 2 cut(s) 30, 190
LweI GCATC 1 cut(s) 305
MaeI CTAG 1 cut(s) 219
MalI GATC 1 cut(s) 79
MboI GATC 1 cut(s) 77
MboII GAAGA 4 cut(s) 30, 84, 87, 401
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 418
Mph1103I ATGCAT 1 cut(s) 298
MseI TTAA 2 cut(s) 192, 450
MslI CAYNNNNRTG 1 cut(s) 389
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 255, 562
MvaI CCWGG 2 cut(s) 255, 562
MwoI GCNNNNNNNGC 6 cut(s) 212, 221, 230, 548, 557, 574
NcoI CCATGG 1 cut(s) 25
NdeII GATC 1 cut(s) 77
NlaIII CATG 2 cut(s) 29, 379
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 379
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 2 cut(s) 20, 205
Psp6I CCWGG 2 cut(s) 253, 560
PspGI CCWGG 2 cut(s) 253, 560
PspPI GGNCC 1 cut(s) 381
PstI CTGCAG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 2 cut(s) 192, 450
SatI GCNGC 2 cut(s) 19, 204
Sau3AI GATC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 381
ScrFI CCNGG 2 cut(s) 255, 562
SduI GDGCHC 1 cut(s) 418
SfaNI GCATC 1 cut(s) 305
SfcI CTRYAG 1 cut(s) 16
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 389
SsiI CCGC 2 cut(s) 131, 231
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 253, 560
StyI CCWWGG 2 cut(s) 25, 120
TaaI ACNGT 2 cut(s) 425, 538
TaqI TCGA 1 cut(s) 299
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 192, 450
Tru9I TTAA 2 cut(s) 192, 450
TseI GCWGC 2 cut(s) 18, 203
TspGWI ACGGA 2 cut(s) 77, 123
VpaK11BI GGWCC 1 cut(s) 381
XceI RCATGY 1 cut(s) 379
XspI CTAG 1 cut(s) 219
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.