Rmu_sc0026994.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026994.1
OG0012247
Physical Location & Seq
Reverse (-)
5368 .. 6582
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026994.1_g000003.1.cds

Sequence Viewer

Length: 654 bp
atgaacaccttaacttcaacatccctctgcaattatcaagtttcaagatttccttctaacatttcaaaccagagaaacatatcaccctttaatacttcatttcctaccaaaatctgcttcaaagtttatgccaatgccaatgagttagaagctgaaccgaaacaagagctacaagctcaaccaaaggaagcaaccaagccttctactatatcagctactgcaccacttgataaggacctcaaaaaggttgttcagaagactgctgcaacatttgcaccaagggcttcaacagcaagcaaaaacccggcagtgcctggttccgtcttgtacaccgttttcgaggttcaagcttatgcctgcatgctcttaggtggagttctgtcttacaatctcatattcccatcaaatgaaccagacctttggagattaatgggaatgtggtccatttggatgtttacaattccttcactgcgtgcccgagactgctcgaaaaatgagaaggaagctctgaactatctctttctccttgttccattactcaacgtgacaatcccatttttcgtcaagtcgtttgcggttgtttggtctgctgataccgtagccttttttgccatgtatgcgtggaagttggggtggctacaaagagaagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.39

Weight (kDa)

9.01

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012247)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48070 AT2G48070 AT2G48070
fragaria_vesca FvH4_2g24170
malus_domestica MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica Prupe.8G247900_v2.0.a1
pyrus_communis pycom03g21620
rosa_chinensis RchiOBHm_Chr6g0291981
rosa_laevigata RLG00000012073
rosa_multiflora Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii Rroxscaffold_7G00175520
rosa_rugosa Rorug06G0222200
rosa_samantha Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana Rw6G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 575
AdeI CACNNNGTG 1 cut(s) 473
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 6 cut(s) 18, 45, 66, 121, 288, 347
AjnI CCWGG 1 cut(s) 313
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 6 cut(s) 152, 169, 176, 215, 350, 506
AluI AGCT 6 cut(s) 152, 169, 176, 215, 350, 506
Alw26I GTCTC 1 cut(s) 474
AlwNI CAGNNNCTG 2 cut(s) 218, 314
Ama87I CYCGRG 1 cut(s) 477
ApeKI GCWGC 1 cut(s) 263
AseI ATTAAT 1 cut(s) 428
AspS9I GGNCC 2 cut(s) 235, 441
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 75
AvaI CYCGRG 1 cut(s) 477
AvaII GGWCC 2 cut(s) 235, 441
BaeGI GKGCMC 1 cut(s) 478
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 409
BciT130I CCWGG 1 cut(s) 315
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 474
BfaI CTAG 1 cut(s) 652
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 305, 315
Bme18I GGWCC 2 cut(s) 235, 441
BmeT110I CYCGRG 1 cut(s) 477
BmgT120I GGNCC 2 cut(s) 235, 441
BmiI GGNNCC 1 cut(s) 319
BmrFI CCNGG 2 cut(s) 305, 315
BpiI GAAGAC 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 2 cut(s) 20, 456
BseLI CCNNNNNNNGG 1 cut(s) 244
BseSI GKGCMC 1 cut(s) 478
BseXI GCAGC 1 cut(s) 250
BsgI GTGCAG 1 cut(s) 204
BsiHKCI CYCGRG 1 cut(s) 477
BsiSI CCGG 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 474
BsoBI CYCGRG 1 cut(s) 477
Bsp1286I GDGCHC 1 cut(s) 478
Bsp1407I TGTACA 1 cut(s) 327
BspACI CCGC 1 cut(s) 575
BspLI GGNNCC 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 327
BssECI CCNNGG 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 334, 598
BstAPI GCANNNNNTGC 1 cut(s) 272
BstAUI TGTACA 1 cut(s) 327
BstC8I GCNNGC 4 cut(s) 295, 358, 362, 474
BstDEI CTNAG 1 cut(s) 367
BstENI CCTNNNNNAGG 1 cut(s) 242
BstF5I GGATG 2 cut(s) 20, 456
BstMAI GTCTC 1 cut(s) 474
BstMWI GCNNNNNNNGC 5 cut(s) 272, 281, 290, 608, 617
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 303, 313
BstSLI GKGCMC 1 cut(s) 478
BstV1I GCAGC 1 cut(s) 250
BstV2I GAAGAC 1 cut(s) 263
BstXI CCANNNNNNTGG 1 cut(s) 420
BtsCI GGATG 2 cut(s) 20, 456
BtsI GCAGTG 2 cut(s) 315, 467
BtsIMutI CAGTG 2 cut(s) 315, 467
Cac8I GCNNGC 4 cut(s) 295, 358, 362, 474
CaiI CAGNNNCTG 2 cut(s) 218, 314
Cfr13I GGNCC 2 cut(s) 235, 441
Csp6I GTAC 1 cut(s) 328
CviAII CATG 2 cut(s) 361, 613
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 1 cut(s) 367
DraIII CACNNNGTG 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 278
Eco47I GGWCC 2 cut(s) 235, 441
Eco88I CYCGRG 1 cut(s) 477
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 278
ErhI CCWWGG 1 cut(s) 278
FaeI CATG 2 cut(s) 364, 616
FaiI YATR 8 cut(s) 80, 129, 209, 354, 362, 395, 614, 618
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FatI CATG 2 cut(s) 360, 612
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 2 cut(s) 7, 463
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 652
GluI GCNGC 1 cut(s) 264
HapII CCGG 1 cut(s) 305
Hin1II CATG 2 cut(s) 364, 616
HindIII AAGCTT 1 cut(s) 348
HpaII CCGG 1 cut(s) 305
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 2 cut(s) 330, 456
Hpy188I TCNGA 2 cut(s) 255, 510
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 2 cut(s) 330, 456
HpyAV CCTTC 4 cut(s) 63, 210, 474, 493
HpyCH4III ACNGT 2 cut(s) 334, 598
HpyCH4IV ACGT 1 cut(s) 543
HpyCH4V TGCA 5 cut(s) 30, 221, 266, 275, 360
HpyF10VI GCNNNNNNNGC 5 cut(s) 272, 281, 290, 608, 617
HpyF3I CTNAG 1 cut(s) 367
HpySE526I ACGT 1 cut(s) 543
Hsp92II CATG 2 cut(s) 364, 616
LpnPI CCDG 6 cut(s) 83, 300, 318, 327, 370, 426
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 1 cut(s) 652
MaeII ACGT 1 cut(s) 543
MaeIII GTNAC 1 cut(s) 544
MboII GAAGA 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 478
MluCI AATT 2 cut(s) 31, 459
MnlI CCTC 3 cut(s) 35, 248, 334
MseI TTAA 3 cut(s) 11, 90, 428
MslI CAYNNNNRTG 1 cut(s) 449
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 305, 315
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 5 cut(s) 272, 281, 290, 608, 617
NciI CCSGG 1 cut(s) 305
NlaIII CATG 2 cut(s) 364, 616
NlaIV GGNNCC 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 544
NspI RCATGY 1 cut(s) 364
PaeI GCATGC 1 cut(s) 364
PkrI GCNGC 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 235
PshBI ATTAAT 1 cut(s) 428
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 319
PspPI GGNCC 2 cut(s) 235, 441
PspPPI RGGWCCY 1 cut(s) 235
PstNI CAGNNNCTG 2 cut(s) 218, 314
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
RseI CAYNNNNRTG 1 cut(s) 449
SaqAI TTAA 3 cut(s) 11, 90, 428
SatI GCNGC 1 cut(s) 264
Sau96I GGNCC 2 cut(s) 235, 441
ScrFI CCNGG 2 cut(s) 305, 315
SduI GDGCHC 1 cut(s) 478
SinI GGWCC 2 cut(s) 235, 441
SmiMI CAYNNNNRTG 1 cut(s) 449
SphI GCATGC 1 cut(s) 364
Sse9I AATT 2 cut(s) 31, 459
SsiI CCGC 1 cut(s) 575
SspMI CTAG 1 cut(s) 652
StyD4I CCNGG 2 cut(s) 303, 313
StyI CCWWGG 1 cut(s) 278
TaaI ACNGT 2 cut(s) 334, 598
TaiI ACGT 1 cut(s) 546
TaqI TCGA 2 cut(s) 339, 488
TasI AATT 2 cut(s) 31, 459
TatI WGTACW 1 cut(s) 327
Tru1I TTAA 3 cut(s) 11, 90, 428
Tru9I TTAA 3 cut(s) 11, 90, 428
TscAI CASTG 2 cut(s) 315, 474
TseFI GTSAC 1 cut(s) 544
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 544
TspDTI ATGAA 3 cut(s) 17, 87, 423
TspGWI ACGGA 1 cut(s) 310
TspRI CASTG 2 cut(s) 315, 474
VpaK11BI GGWCC 2 cut(s) 235, 441
VspI ATTAAT 1 cut(s) 428
XagI CCTNNNNNAGG 1 cut(s) 242
XceI RCATGY 1 cut(s) 364
XspI CTAG 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.