Rh6BG343400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012247
Physical Location & Seq
Reverse (-)
57522699 .. 57524539
1841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG343400.1

Sequence Viewer

Length: 666 bp
ATGAACACCTTAACTTCAACATCCCTCTGCAATTATCAAGTTTCAAGATTTCCTTCTAACATTTCAAACCAGAGAAACATATCACCCTTTAATACTTCATTTCCTACCAAAATCTGCTTCAAAGTTTATGCCAATGCCAATGCCAATACCAATGACTTAGAAGCTGAACCGAAACAAGAGCTAGAAGCTCAACCAAAGGAAGCAACCAAGCCTTCTACTATATCAGCTACTGCACCACTTGATAAGGACCTCAAAAAGGTTGTTCAGAAGACTGCTGCAACATTTGCACCAAGGGCTTCAACAGCAAGCAAAAACCCGGCAGTGCCTGGTTCCGTCTTGTACACCGTTTTCGAGGTTCAAGCTTATGCCTGCATGCTCTTAGGTGGAGTTCTGTCTTACAATCTCATATTCCCATCAAATGAACCAGACCTTTGGAGATTAATGGGAATGTGGTCCATTTGGATGTTTACAATTCCTTCACTGCGTGCCCGAGACTGCTCGAAAAATGAGAAGGAAGCTCTGAACTATCTCTTTCTCCTTGTTCCATTACTCAACGTGACAATCCCATTTTTCGTGAAGTCGTTTGCAGTTGTTTGGTCTGCTGATACCGTAGCCTTCTTTGCCATGTATGCATGGAAGTTGGGGTGGCTACAAAGAGAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

221

Amino Acids

24.78

Weight (kDa)

8.84

Isoelectric Point (pI)

40.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012247)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48070 AT2G48070 AT2G48070
fragaria_vesca FvH4_2g24170
malus_domestica MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica Prupe.8G247900_v2.0.a1
pyrus_communis pycom03g21620
rosa_chinensis RchiOBHm_Chr6g0291981
rosa_laevigata RLG00000012073
rosa_multiflora Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii Rroxscaffold_7G00175520
rosa_rugosa Rorug06G0222200
rosa_samantha Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana Rw6G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 6 cut(s) 18, 45, 66, 121, 300, 359
AjnI CCWGG 1 cut(s) 325
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 6 cut(s) 164, 181, 188, 227, 362, 518
AluI AGCT 6 cut(s) 164, 181, 188, 227, 362, 518
Alw26I GTCTC 1 cut(s) 486
AlwNI CAGNNNCTG 2 cut(s) 230, 326
Ama87I CYCGRG 1 cut(s) 489
ApeKI GCWGC 1 cut(s) 275
AseI ATTAAT 1 cut(s) 440
AspS9I GGNCC 2 cut(s) 247, 453
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 75
AvaI CYCGRG 1 cut(s) 489
AvaII GGWCC 2 cut(s) 247, 453
BaeGI GKGCMC 1 cut(s) 490
BbsI GAAGAC 1 cut(s) 275
BbvI GCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 421
BciT130I CCWGG 1 cut(s) 327
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 486
BfaI CTAG 2 cut(s) 182, 664
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 2 cut(s) 317, 327
Bme18I GGWCC 2 cut(s) 247, 453
BmeT110I CYCGRG 1 cut(s) 489
BmgT120I GGNCC 2 cut(s) 247, 453
BmiI GGNNCC 1 cut(s) 331
BmrFI CCNGG 2 cut(s) 317, 327
BpiI GAAGAC 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 2 cut(s) 20, 468
BseLI CCNNNNNNNGG 1 cut(s) 256
BseSI GKGCMC 1 cut(s) 490
BseXI GCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 489
BsiSI CCGG 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 486
BsoBI CYCGRG 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 490
Bsp1407I TGTACA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 346, 610
BstAPI GCANNNNNTGC 1 cut(s) 284
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 4 cut(s) 307, 370, 374, 486
BstDEI CTNAG 2 cut(s) 157, 379
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 20, 468
BstMAI GTCTC 1 cut(s) 486
BstMWI GCNNNNNNNGC 5 cut(s) 284, 293, 302, 620, 629
BstNI CCWGG 1 cut(s) 327
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 315, 325
BstSLI GKGCMC 1 cut(s) 490
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 1 cut(s) 275
BstXI CCANNNNNNTGG 1 cut(s) 432
BtsCI GGATG 2 cut(s) 20, 468
BtsI GCAGTG 2 cut(s) 327, 479
BtsIMutI CAGTG 2 cut(s) 327, 479
Cac8I GCNNGC 4 cut(s) 307, 370, 374, 486
CaiI CAGNNNCTG 2 cut(s) 230, 326
Cfr13I GGNCC 2 cut(s) 247, 453
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 373, 625, 633
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 157, 379
DraIII CACNNNGTG 1 cut(s) 485
Eco130I CCWWGG 1 cut(s) 290
Eco47I GGWCC 2 cut(s) 247, 453
Eco88I CYCGRG 1 cut(s) 489
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 290
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 3 cut(s) 376, 628, 636
FaiI YATR 9 cut(s) 80, 129, 221, 366, 374, 407, 626, 630, 634
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FatI CATG 3 cut(s) 372, 624, 632
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 2 cut(s) 7, 475
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 2 cut(s) 182, 664
GluI GCNGC 1 cut(s) 276
HapII CCGG 1 cut(s) 317
Hin1II CATG 3 cut(s) 376, 628, 636
HindIII AAGCTT 1 cut(s) 360
HpaII CCGG 1 cut(s) 317
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 2 cut(s) 342, 468
Hpy188I TCNGA 2 cut(s) 267, 522
Hpy188III TCNNGA 2 cut(s) 45, 574
Hpy8I GTNNAC 2 cut(s) 342, 468
HpyAV CCTTC 5 cut(s) 63, 222, 486, 505, 625
HpyCH4III ACNGT 2 cut(s) 346, 610
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 7 cut(s) 30, 233, 278, 287, 372, 587, 632
HpyF10VI GCNNNNNNNGC 5 cut(s) 284, 293, 302, 620, 629
HpyF3I CTNAG 2 cut(s) 157, 379
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 3 cut(s) 376, 628, 636
LpnPI CCDG 6 cut(s) 83, 312, 330, 339, 382, 438
Lsp1109I GCAGC 1 cut(s) 262
MaeI CTAG 2 cut(s) 182, 664
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 1 cut(s) 556
MboII GAAGA 1 cut(s) 280
MhlI GDGCHC 1 cut(s) 490
MluCI AATT 2 cut(s) 31, 471
MnlI CCTC 3 cut(s) 35, 260, 346
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 3 cut(s) 11, 90, 440
MslI CAYNNNNRTG 1 cut(s) 461
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 2 cut(s) 317, 327
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 5 cut(s) 284, 293, 302, 620, 629
NciI CCSGG 1 cut(s) 317
NlaIII CATG 3 cut(s) 376, 628, 636
NlaIV GGNNCC 1 cut(s) 331
NmuCI GTSAC 1 cut(s) 556
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 1 cut(s) 376
PaeI GCATGC 1 cut(s) 376
PkrI GCNGC 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 2 cut(s) 247, 453
PspPPI RGGWCCY 1 cut(s) 247
PstNI CAGNNNCTG 2 cut(s) 230, 326
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 3 cut(s) 11, 90, 440
SatI GCNGC 1 cut(s) 276
Sau96I GGNCC 2 cut(s) 247, 453
ScrFI CCNGG 2 cut(s) 317, 327
SduI GDGCHC 1 cut(s) 490
SinI GGWCC 2 cut(s) 247, 453
SmiMI CAYNNNNRTG 1 cut(s) 461
SphI GCATGC 1 cut(s) 376
Sse9I AATT 2 cut(s) 31, 471
SspMI CTAG 2 cut(s) 182, 664
StyD4I CCNGG 2 cut(s) 315, 325
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 346, 610
TaiI ACGT 1 cut(s) 558
TaqI TCGA 2 cut(s) 351, 500
TasI AATT 2 cut(s) 31, 471
TatI WGTACW 1 cut(s) 339
Tru1I TTAA 3 cut(s) 11, 90, 440
Tru9I TTAA 3 cut(s) 11, 90, 440
TscAI CASTG 2 cut(s) 327, 486
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 3 cut(s) 17, 87, 435
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 2 cut(s) 327, 486
VpaK11BI GGWCC 2 cut(s) 247, 453
VspI ATTAAT 1 cut(s) 440
XagI CCTNNNNNAGG 1 cut(s) 254
XceI RCATGY 1 cut(s) 376
XspI CTAG 2 cut(s) 182, 664
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.