Prupe.8G247900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0012247
Physical Location & Seq
Reverse (-)
21428723 .. 21430431
1709 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G247900.1

Sequence Viewer

Length: 657 bp
ATGAACGCCTTAACTTCAACTTCTCTCTGCAACCACCAAATTTCAAGATTTCCTTTTACTGTTTCAAACCCGAGAAACATATCTCCATTTCCCAGCAGAGTCTTCTTCAAACTATATGCCAATGCCAATACCAATGAGTTAGATACACAGGCACAGGCAGTGGAGGAGCCAAAACAAGAGCTAGAAGCTGATCCAAAGGAAGCAGGCAAGGCCTCCCCTGCTTCTCCACTTGACAAGGACCTCAAAAAGGTTGTTCAGAAGACTGCTGCAACCTTTGCACCAAGGGCTTCCACAGCTTCCAAAAACCCTGCTGTGCCTGGCAGTACTCTGTACACTGTTTTTGAGGTTCAAGCCTATGCCTCCATGCTGCTTGGTGGAGTTCTGTCTTTTAATATCGTATTCCCTTCAAATGAACCAGACATATGGAGATTGATGGGCATGTGGTCCATTTGGATGTTTACGATTCCTTCACTGCGTGCACGAGACTGCTCAAAAAATGAGAAAGAAGCTCTAAACTATCTCTTTCTTCTCGTCCCTTTACTTAATGTGACAATCCCATTCTTTTGGAAGTCCTTTGCAGTTGTTTGGTCCGCCGACACCGTAGCCTTCTTCGCCATGTATGCATGGAAGCTTGGTTGGCTGCAAAGAAAAAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.46

Weight (kDa)

9.23

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012247)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48070 AT2G48070 AT2G48070
fragaria_vesca FvH4_2g24170
malus_domestica MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica Prupe.8G247900_v2.0.a1
pyrus_communis pycom03g21620
rosa_chinensis RchiOBHm_Chr6g0291981
rosa_laevigata RLG00000012073
rosa_multiflora Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii Rroxscaffold_7G00175520
rosa_rugosa Rorug06G0222200
rosa_samantha Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana Rw6G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 591
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 476
AfaI GTAC 2 cut(s) 325, 332
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 6 cut(s) 18, 45, 66, 109, 350, 408
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 6 cut(s) 181, 188, 296, 509, 631, 654
AluI AGCT 6 cut(s) 181, 188, 296, 509, 631, 654
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 1 cut(s) 477
Alw44I GTGCAC 1 cut(s) 477
AlwI GGATC 1 cut(s) 185
Ama87I CYCGRG 1 cut(s) 70
AoxI GGCC 1 cut(s) 210
ApaLI GTGCAC 1 cut(s) 477
ApeKI GCWGC 3 cut(s) 266, 367, 640
ApoI RAATTY 1 cut(s) 39
AspS9I GGNCC 3 cut(s) 238, 444, 588
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 3 cut(s) 238, 444, 588
BaeGI GKGCMC 1 cut(s) 481
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 2 cut(s) 94, 266
Bbv12I GWGCWC 1 cut(s) 481
BbvI GCAGC 3 cut(s) 253, 354, 627
BccI CCATC 1 cut(s) 427
BciT130I CCWGG 1 cut(s) 318
BcoDI GTCTC 1 cut(s) 477
BfaI CTAG 2 cut(s) 182, 655
BisI GCNGC 3 cut(s) 267, 368, 641
BlsI GCNGC 3 cut(s) 268, 369, 642
BmcAI AGTACT 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 318
Bme18I GGWCC 3 cut(s) 238, 444, 588
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 3 cut(s) 238, 444, 588
BmiI GGNNCC 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 318
BpiI GAAGAC 2 cut(s) 94, 266
BsaJI CCNNGG 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 247
BseRI GAGGAG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 481
BseXI GCAGC 3 cut(s) 253, 354, 627
BseYI CCCAGC 1 cut(s) 92
BshFI GGCC 1 cut(s) 212
BsiHKAI GWGCWC 1 cut(s) 481
BsiHKCI CYCGRG 1 cut(s) 70
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 477
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 70
Bsp1286I GDGCHC 1 cut(s) 481
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 591
BspANI GGCC 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 168
BspPI GGATC 1 cut(s) 185
BsrGI TGTACA 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 1 cut(s) 190
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 1 cut(s) 281
Bst2BI CACGAG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 3 cut(s) 61, 337, 601
BstAPI GCANNNNNTGC 1 cut(s) 275
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 2 cut(s) 205, 477
BstENI CCTNNNNNAGG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 459
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 477
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 8 cut(s) 209, 218, 275, 284, 293, 611, 620, 637
BstNI CCWGG 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 442
BstSCI CCNGG 1 cut(s) 316
BstSLI GKGCMC 1 cut(s) 481
BstV1I GCAGC 3 cut(s) 253, 354, 627
BstV2I GAAGAC 2 cut(s) 94, 266
BstXI CCANNNNNNTGG 2 cut(s) 423, 564
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 1 cut(s) 459
BtsI GCAGTG 2 cut(s) 165, 470
BtsIMutI CAGTG 3 cut(s) 165, 333, 470
Cac8I GCNNGC 2 cut(s) 205, 477
Cfr13I GGNCC 3 cut(s) 238, 444, 588
Csp6I GTAC 2 cut(s) 324, 331
CviAII CATG 4 cut(s) 364, 439, 616, 624
CviQI GTAC 2 cut(s) 324, 331
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DraIII CACNNNGTG 1 cut(s) 476
EciI GGCGGA 1 cut(s) 580
Eco130I CCWWGG 1 cut(s) 281
Eco147I AGGCCT 1 cut(s) 212
Eco47I GGWCC 3 cut(s) 238, 444, 588
Eco88I CYCGRG 1 cut(s) 70
EcoNI CCTNNNNNAGG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 281
EcoT22I ATGCAT 1 cut(s) 625
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 4 cut(s) 367, 442, 619, 627
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FaqI GGGAC 1 cut(s) 518
FatI CATG 4 cut(s) 363, 438, 615, 623
FauNDI CATATG 1 cut(s) 422
Fnu4HI GCNGC 3 cut(s) 267, 368, 641
FokI GGATG 1 cut(s) 466
Fsp4HI GCNGC 3 cut(s) 267, 368, 641
FspBI CTAG 2 cut(s) 182, 655
GluI GCNGC 3 cut(s) 267, 368, 641
GsaI CCCAGC 1 cut(s) 96
HaeIII GGCC 1 cut(s) 212
Hin1II CATG 4 cut(s) 367, 442, 619, 627
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 2 cut(s) 99, 463
Hpy166II GTNNAC 3 cut(s) 333, 459, 479
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 3 cut(s) 333, 459, 479
HpyAV CCTTC 3 cut(s) 414, 477, 616
HpyCH4III ACNGT 3 cut(s) 61, 337, 601
HpyCH4V TGCA 7 cut(s) 30, 269, 278, 479, 578, 623, 643
HpyF10VI GCNNNNNNNGC 8 cut(s) 209, 218, 275, 284, 293, 611, 620, 637
Hsp92II CATG 4 cut(s) 367, 442, 619, 627
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 9 cut(s) 106, 134, 140, 189, 231, 303, 321, 330, 429
Lsp1109I GCAGC 3 cut(s) 253, 354, 627
MaeI CTAG 2 cut(s) 182, 655
MaeIII GTNAC 1 cut(s) 547
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 5 cut(s) 94, 97, 271, 518, 601
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 1 cut(s) 39
MlyI GAGTC 1 cut(s) 108
MnlI CCTC 5 cut(s) 157, 223, 251, 337, 370
Mph1103I ATGCAT 1 cut(s) 625
MseI TTAA 3 cut(s) 11, 390, 543
MslI CAYNNNNRTG 1 cut(s) 452
MspR9I CCNGG 1 cut(s) 318
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 8 cut(s) 209, 218, 275, 284, 293, 611, 620, 637
NdeI CATATG 1 cut(s) 422
NdeII GATC 1 cut(s) 190
NlaIII CATG 4 cut(s) 367, 442, 619, 627
NlaIV GGNNCC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 547
NsiI ATGCAT 1 cut(s) 625
NspI RCATGY 1 cut(s) 442
PceI AGGCCT 1 cut(s) 212
PfeI GAWTC 1 cut(s) 463
PkrI GCNGC 3 cut(s) 268, 369, 642
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PpuMI RGGWCCY 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 92
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 168
PspPI GGNCC 3 cut(s) 238, 444, 588
PspPPI RGGWCCY 1 cut(s) 238
RsaI GTAC 2 cut(s) 325, 332
RsaNI GTAC 2 cut(s) 324, 331
RseI CAYNNNNRTG 1 cut(s) 452
SaqAI TTAA 3 cut(s) 11, 390, 543
SatI GCNGC 3 cut(s) 267, 368, 641
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 3 cut(s) 238, 444, 588
ScaI AGTACT 1 cut(s) 325
SchI GAGTC 1 cut(s) 108
ScrFI CCNGG 1 cut(s) 318
SduI GDGCHC 1 cut(s) 481
SinI GGWCC 3 cut(s) 238, 444, 588
SmiMI CAYNNNNRTG 1 cut(s) 452
Sse9I AATT 1 cut(s) 39
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 1 cut(s) 591
SspMI CTAG 2 cut(s) 182, 655
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 316
StyI CCWWGG 1 cut(s) 281
TaaI ACNGT 3 cut(s) 61, 337, 601
TasI AATT 1 cut(s) 39
TatI WGTACW 2 cut(s) 323, 330
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 3 cut(s) 11, 390, 543
Tru9I TTAA 3 cut(s) 11, 390, 543
TscAI CASTG 3 cut(s) 165, 340, 477
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 3 cut(s) 266, 367, 640
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 2 cut(s) 17, 426
TspRI CASTG 3 cut(s) 165, 340, 477
VneI GTGCAC 1 cut(s) 477
VpaK11BI GGWCC 3 cut(s) 238, 444, 588
XagI CCTNNNNNAGG 1 cut(s) 245
XapI RAATTY 1 cut(s) 39
XceI RCATGY 1 cut(s) 442
XspI CTAG 2 cut(s) 182, 655
ZrmI AGTACT 1 cut(s) 325
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.