Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012247

Physical Location & Seq

Genomic Coordinates Reverse (-)

53972566 .. 53974112

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG349600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGAACACCTTAACTTCAACATCCCTCTGCAATTATCAAGTTTCAAGATTTCCTTCTAACATTTCAAACCAGAGAAACATATCACCCTTTAATACTTCATTTCCTACCAAAATCTGCTTCAAAGTTTATGCCAATGCCAATGCCAATGAGTTAGAAGCTGAACAGAAACAAGAGCTAGAAGCTCAACCAAAGGAAGCAACCAAGCCTTCTACTATATCAGCTACTGCACCACTTGATAAGGACCTCAAAAAGGTTGTTCAGAAGACTGCTGCAACATTTGCACCAAGGGCTTCAACAGCAAGCAAAAACCCGGCAGTGCCTGGTTCCGTCTTGTACACCGTTTTCGAGGTTCAAGCTTATGCCTGCATGCTCTTAGGTGGAGTTCTGTCTTACAATCTCATATTCCCATCAAATGAACCAGACCTTTGGAGATTAATGGGAATGTGGTCCATTTGGATGTTTACAATTCCTTCACTGCGTGCCCGAGACTGCTCGAAAAATGAGAAGGAAGCTCTGAACTATCTTTTTCTCCTTGTTCCATTACTCAACGTGACAATCCCATTTTTCGTCAAGTCGTTTGCAGTTGTTTGGTCTGCTGATACCGTAGCCTTCTTTGCCATGTATGCGTGGAAGTTGGGGTGGCTACAAAGAGAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

219

Amino Acids

24.61

Weight (kDa)

8.84

Isoelectric Point (pI)

41.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48070 AT2G48070 AT2G48070
fragaria_vesca	FvH4_2g24170
malus_domestica	MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica	Prupe.8G247900_v2.0.a1
pyrus_communis	pycom03g21620
rosa_chinensis	RchiOBHm_Chr6g0291981
rosa_laevigata	RLG00000012073
rosa_multiflora	Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175520
rosa_rugosa	Rorug06G0222200
rosa_samantha	Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana	Rw6G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	6 cut(s)	18, 45, 66, 121, 294, 353
AjnI	CCWGG	1 cut(s)	319
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	6 cut(s)	158, 175, 182, 221, 356, 512
AluI	AGCT	6 cut(s)	158, 175, 182, 221, 356, 512
Alw26I	GTCTC	1 cut(s)	480
AlwNI	CAGNNNCTG	2 cut(s)	224, 320
Ama87I	CYCGRG	1 cut(s)	483
ApeKI	GCWGC	1 cut(s)	269
AseI	ATTAAT	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	241, 447
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	1 cut(s)	75
AvaI	CYCGRG	1 cut(s)	483
AvaII	GGWCC	2 cut(s)	241, 447
BaeGI	GKGCMC	1 cut(s)	484
BbsI	GAAGAC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	1 cut(s)	415
BciT130I	CCWGG	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	2 cut(s)	176, 658
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	311, 321
Bme18I	GGWCC	2 cut(s)	241, 447
BmeT110I	CYCGRG	1 cut(s)	483
BmgT120I	GGNCC	2 cut(s)	241, 447
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	2 cut(s)	311, 321
BpiI	GAAGAC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	2 cut(s)	20, 462
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseSI	GKGCMC	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	256
BsgI	GTGCAG	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	480
BsoBI	CYCGRG	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp1407I	TGTACA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	325
BsrGI	TGTACA	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	321
Bst4CI	ACNGT	2 cut(s)	340, 604
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstAUI	TGTACA	1 cut(s)	333
BstC8I	GCNNGC	4 cut(s)	301, 364, 368, 480
BstDEI	CTNAG	1 cut(s)	373
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	20, 462
BstMAI	GTCTC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 287, 296, 614, 623
BstNI	CCWGG	1 cut(s)	321
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	2 cut(s)	309, 319
BstSLI	GKGCMC	1 cut(s)	484
BstV1I	GCAGC	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	20, 462
BtsI	GCAGTG	2 cut(s)	321, 473
BtsIMutI	CAGTG	2 cut(s)	321, 473
Cac8I	GCNNGC	4 cut(s)	301, 364, 368, 480
CaiI	CAGNNNCTG	2 cut(s)	224, 320
Cfr13I	GGNCC	2 cut(s)	241, 447
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	2 cut(s)	367, 619
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	373
DraIII	CACNNNGTG	1 cut(s)	479
Eco130I	CCWWGG	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	241, 447
Eco88I	CYCGRG	1 cut(s)	483
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoO109I	RGGNCCY	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	2 cut(s)	370, 622
FaiI	YATR	8 cut(s)	80, 129, 215, 360, 368, 401, 620, 624
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FatI	CATG	2 cut(s)	366, 618
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	2 cut(s)	7, 469
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	176, 658
GluI	GCNGC	1 cut(s)	270
HapII	CCGG	1 cut(s)	311
Hin1II	CATG	2 cut(s)	370, 622
HindIII	AAGCTT	1 cut(s)	354
HpaII	CCGG	1 cut(s)	311
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	2 cut(s)	336, 462
Hpy188I	TCNGA	2 cut(s)	261, 516
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	2 cut(s)	336, 462
HpyAV	CCTTC	5 cut(s)	63, 216, 480, 499, 619
HpyCH4III	ACNGT	2 cut(s)	340, 604
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	6 cut(s)	30, 227, 272, 281, 366, 581
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 287, 296, 614, 623
HpyF3I	CTNAG	1 cut(s)	373
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	2 cut(s)	370, 622
LpnPI	CCDG	6 cut(s)	83, 306, 324, 333, 376, 432
Lsp1109I	GCAGC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	176, 658
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	1 cut(s)	550
MboII	GAAGA	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	484
MluCI	AATT	2 cut(s)	31, 465
MnlI	CCTC	3 cut(s)	35, 254, 340
MseI	TTAA	3 cut(s)	11, 90, 434
MslI	CAYNNNNRTG	1 cut(s)	455
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	311, 321
MvaI	CCWGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	5 cut(s)	278, 287, 296, 614, 623
NciI	CCSGG	1 cut(s)	311
NlaIII	CATG	2 cut(s)	370, 622
NlaIV	GGNNCC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	550
NspI	RCATGY	1 cut(s)	370
PaeI	GCATGC	1 cut(s)	370
PkrI	GCNGC	1 cut(s)	271
PpuMI	RGGWCCY	1 cut(s)	241
PshBI	ATTAAT	1 cut(s)	434
Psp5II	RGGWCCY	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	325
PspPI	GGNCC	2 cut(s)	241, 447
PspPPI	RGGWCCY	1 cut(s)	241
PstNI	CAGNNNCTG	2 cut(s)	224, 320
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	11, 90, 434
SatI	GCNGC	1 cut(s)	270
Sau96I	GGNCC	2 cut(s)	241, 447
ScrFI	CCNGG	2 cut(s)	311, 321
SduI	GDGCHC	1 cut(s)	484
SinI	GGWCC	2 cut(s)	241, 447
SmiMI	CAYNNNNRTG	1 cut(s)	455
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	2 cut(s)	31, 465
SspMI	CTAG	2 cut(s)	176, 658
StyD4I	CCNGG	2 cut(s)	309, 319
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	2 cut(s)	340, 604
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	2 cut(s)	345, 494
TasI	AATT	2 cut(s)	31, 465
TatI	WGTACW	1 cut(s)	333
Tru1I	TTAA	3 cut(s)	11, 90, 434
Tru9I	TTAA	3 cut(s)	11, 90, 434
TscAI	CASTG	2 cut(s)	321, 480
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	17, 87, 429
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	2 cut(s)	321, 480
VpaK11BI	GGWCC	2 cut(s)	241, 447
VspI	ATTAAT	1 cut(s)	434
XagI	CCTNNNNNAGG	1 cut(s)	248
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	2 cut(s)	176, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.