pycom03g21620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012247
Physical Location & Seq
Reverse (-)
21884531 .. 21885085
555 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21620.2

Sequence Viewer

Length: 438 bp
ATGTTCGATTTCTCACAACGTTATACTTCCATTTCTTGTAACAAACAGGTTGTTCAGAAGACTGCTGCAACCTTTGCACCAAGGGCTTCCACAGCTTCCAAAAACCCTGCCATGCCCAGGAGCACTTTGTACACTGTTTTCGAGGTTCAAGCCTATGCCTCCATGCTGCTAGGCGGAGTTCTGTCCTTCAATCTCATCCTTCCGTCAAATGAACCAGACATATGGAGATTAATGGGAATGTGGTCCATTTGGATGTTTAACTGGTCGAAAAATGAGAAGGAAGCTCTAAACTATCTCTTCCTCCTCGTCCCGTTACTCAATGTTACAATCCCATTCTTTATTAAGTCCTTTGCTATCGTTTGGTCTGCTGATACTGTAGCCTTTTTCGCCATGTATGCGTGGAAGGTACGTGATCAGAGATTCAGATGTTTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.78

Weight (kDa)

9.59

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012247)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48070 AT2G48070 AT2G48070
fragaria_vesca FvH4_2g24170
malus_domestica MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica Prupe.8G247900_v2.0.a1
pyrus_communis pycom03g21620
rosa_chinensis RchiOBHm_Chr6g0291981
rosa_laevigata RLG00000012073
rosa_multiflora Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii Rroxscaffold_7G00175520
rosa_rugosa Rorug06G0222200
rosa_samantha Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana Rw6G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 174
AclI AACGTT 1 cut(s) 19
AfaI GTAC 2 cut(s) 131, 408
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 2 cut(s) 149, 190
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 2 cut(s) 95, 284
AluI AGCT 2 cut(s) 95, 284
Alw21I GWGCWC 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 65, 166
AseI ATTAAT 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 243
AvaII GGWCC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 52, 153
BciT130I CCWGG 1 cut(s) 118
BclI TGATCA 1 cut(s) 412
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 375
BisI GCNGC 2 cut(s) 66, 167
BlsI GCNGC 2 cut(s) 67, 168
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 65
BsaAI YACGTR 1 cut(s) 410
BsaJI CCNNGG 2 cut(s) 80, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 80, 116
BseGI GGATG 2 cut(s) 195, 258
BseLI CCNNNNNNNGG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 52, 153
BsiHKAI GWGCWC 1 cut(s) 125
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 125
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 1 cut(s) 412
BspACI CCGC 1 cut(s) 174
BsrGI TGTACA 1 cut(s) 129
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 80, 116
BssMI GATC 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 136, 376
Bst6I CTCTTC 1 cut(s) 302
BstAPI GCANNNNNTGC 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 410
BstF5I GGATG 2 cut(s) 195, 258
BstKTI GATC 1 cut(s) 415
BstMBI GATC 1 cut(s) 412
BstMWI GCNNNNNNNGC 5 cut(s) 74, 83, 92, 386, 395
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 2 cut(s) 52, 153
BstV2I GAAGAC 1 cut(s) 65
BstXI CCANNNNNNTGG 1 cut(s) 222
BtsCI GGATG 2 cut(s) 195, 258
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 243
Csp6I GTAC 2 cut(s) 130, 407
CviAII CATG 3 cut(s) 112, 163, 391
CviJI RGCY 5 cut(s) 86, 95, 152, 284, 380
CviKI_1 RGCY 5 cut(s) 86, 95, 152, 284, 380
CviQI GTAC 2 cut(s) 130, 407
DpnI GATC 1 cut(s) 414
DpnII GATC 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 80
FaeI CATG 3 cut(s) 115, 166, 394
FaiI YATR 8 cut(s) 24, 113, 156, 164, 221, 223, 392, 396
FaqI GGGAC 1 cut(s) 293
FatI CATG 3 cut(s) 111, 162, 390
FauNDI CATATG 1 cut(s) 221
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 66, 167
FokI GGATG 2 cut(s) 182, 265
Fsp4HI GCNGC 2 cut(s) 66, 167
FspBI CTAG 1 cut(s) 170
GluI GCNGC 2 cut(s) 66, 167
Hin1II CATG 3 cut(s) 115, 166, 394
HinfI GANTC 1 cut(s) 420
Hpy166II GTNNAC 2 cut(s) 132, 431
Hpy188I TCNGA 3 cut(s) 57, 417, 425
Hpy8I GTNNAC 2 cut(s) 132, 431
HpyAV CCTTC 4 cut(s) 196, 209, 271, 397
HpyCH4III ACNGT 2 cut(s) 136, 376
HpyCH4IV ACGT 2 cut(s) 19, 409
HpyCH4V TGCA 2 cut(s) 68, 77
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 83, 92, 386, 395
HpySE526I ACGT 2 cut(s) 19, 409
Hsp92II CATG 3 cut(s) 115, 166, 394
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 1 cut(s) 412
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 6 cut(s) 32, 103, 120, 130, 228, 247
Lsp1109I GCAGC 2 cut(s) 52, 153
MaeI CTAG 1 cut(s) 170
MaeII ACGT 2 cut(s) 19, 409
MaeIII GTNAC 3 cut(s) 38, 312, 322
MalI GATC 1 cut(s) 414
MboI GATC 1 cut(s) 412
MboII GAAGA 2 cut(s) 70, 289
MhlI GDGCHC 1 cut(s) 125
MnlI CCTC 4 cut(s) 136, 169, 311, 314
MseI TTAA 4 cut(s) 230, 258, 342, 436
MslI CAYNNNNRTG 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 5 cut(s) 74, 83, 92, 386, 395
NdeI CATATG 1 cut(s) 221
NdeII GATC 1 cut(s) 412
NlaIII CATG 3 cut(s) 115, 166, 394
PfeI GAWTC 1 cut(s) 420
PkrI GCNGC 2 cut(s) 67, 168
Ppu21I YACGTR 1 cut(s) 410
PshBI ATTAAT 1 cut(s) 230
Psp1406I AACGTT 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspPI GGNCC 1 cut(s) 243
RsaI GTAC 2 cut(s) 131, 408
RsaNI GTAC 2 cut(s) 130, 407
RseI CAYNNNNRTG 1 cut(s) 251
SaqAI TTAA 4 cut(s) 230, 258, 342, 436
SatI GCNGC 2 cut(s) 66, 167
Sau3AI GATC 1 cut(s) 412
Sau96I GGNCC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 125
SetI ASST 8 cut(s) 22, 51, 74, 97, 147, 286, 408, 412
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 251
SsiI CCGC 1 cut(s) 174
SspMI CTAG 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 80
TaaI ACNGT 2 cut(s) 136, 376
TaiI ACGT 2 cut(s) 22, 412
TaqI TCGA 3 cut(s) 6, 141, 266
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 1 cut(s) 420
Tru1I TTAA 4 cut(s) 230, 258, 342, 436
Tru9I TTAA 4 cut(s) 230, 258, 342, 436
TscAI CASTG 1 cut(s) 139
TseI GCWGC 2 cut(s) 65, 166
TspDTI ATGAA 1 cut(s) 225
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 243
VspI ATTAAT 1 cut(s) 230
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.