Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012247

Physical Location & Seq

Genomic Coordinates Reverse (-)

53641280 .. 53645703

Gene Structure 4424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG336000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAACACCTTAACTTCAACATCCCTCTGCAATTATCAAGTTTCAAGATTTCCTTCTAACATTTCAAACCAGAGAAACATATCACCCTTTAATACTTCATTTCCTACCAAAATCTGCTTCAAAGTTTATGCCAATGCCAATGAGTTAGAAGCTGAACCGAAACAAGAGCTAGAAGCTCAACCAAAGGAAGCAACCAAGCCTTCCACTATATCAGCTACTGCACCACTTGATAAGGACCTCAAAAAGGTTGTTCAGAAGACTGCTGCAACATTTGCACCAAGGGCTTCAACAGCAAGCAAAAACCCGGCAGTGCCTGGTTCCGTCTTGTACACCGTTTTCGAGGTTCAAGCTTATGCCTGCATGCTCTTAGGTGGAGTTCTGTCTTACAATCTCATATTCCCATCAAATGAACCAGACCTTTGGAGATTAATGGGAATGTGGTCCATTTGGATGTTTAGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.08

Weight (kDa)

9.01

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48070 AT2G48070 AT2G48070
fragaria_vesca	FvH4_2g24170
malus_domestica	MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica	Prupe.8G247900_v2.0.a1
pyrus_communis	pycom03g21620
rosa_chinensis	RchiOBHm_Chr6g0291981
rosa_laevigata	RLG00000012073
rosa_multiflora	Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175520
rosa_rugosa	Rorug06G0222200
rosa_samantha	Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana	Rw6G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	6 cut(s)	18, 45, 66, 121, 288, 347
AjnI	CCWGG	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	5 cut(s)	152, 169, 176, 215, 350
AluI	AGCT	5 cut(s)	152, 169, 176, 215, 350
AlwNI	CAGNNNCTG	2 cut(s)	218, 314
ApeKI	GCWGC	1 cut(s)	263
AseI	ATTAAT	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	235, 441
AsuC2I	CCSGG	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	75
AvaII	GGWCC	2 cut(s)	235, 441
BbsI	GAAGAC	1 cut(s)	263
BbvI	GCAGC	1 cut(s)	250
BccI	CCATC	1 cut(s)	409
BciT130I	CCWGG	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	305
BfaI	CTAG	1 cut(s)	170
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	2 cut(s)	305, 315
Bme18I	GGWCC	2 cut(s)	235, 441
BmgT120I	GGNCC	2 cut(s)	235, 441
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	305, 315
BpiI	GAAGAC	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	2 cut(s)	20, 456
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	305
BslI	CCNNNNNNNGG	1 cut(s)	244
Bsp1407I	TGTACA	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	319
BsrGI	TGTACA	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	278
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	334
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstAUI	TGTACA	1 cut(s)	327
BstC8I	GCNNGC	3 cut(s)	295, 358, 362
BstDEI	CTNAG	1 cut(s)	367
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	20, 456
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 281, 290
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	303, 313
BstV1I	GCAGC	1 cut(s)	250
BstV2I	GAAGAC	1 cut(s)	263
BstXI	CCANNNNNNTGG	1 cut(s)	420
BtsCI	GGATG	2 cut(s)	20, 456
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	3 cut(s)	295, 358, 362
CaiI	CAGNNNCTG	2 cut(s)	218, 314
Cfr13I	GGNCC	2 cut(s)	235, 441
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	1 cut(s)	361
CviJI	RGCY	7 cut(s)	152, 169, 176, 199, 215, 284, 350
CviKI_1	RGCY	7 cut(s)	152, 169, 176, 199, 215, 284, 350
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	278
Eco47I	GGWCC	2 cut(s)	235, 441
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	1 cut(s)	364
FaiI	YATR	6 cut(s)	80, 129, 209, 354, 362, 395
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FatI	CATG	1 cut(s)	360
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	1 cut(s)	264
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	348
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	330
Hpy188I	TCNGA	1 cut(s)	255
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	1 cut(s)	330
HpyAV	CCTTC	2 cut(s)	63, 210
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	5 cut(s)	30, 221, 266, 275, 360
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 281, 290
HpyF3I	CTNAG	1 cut(s)	367
Hsp92II	CATG	1 cut(s)	364
LpnPI	CCDG	6 cut(s)	83, 300, 318, 327, 370, 426
Lsp1109I	GCAGC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	170
MboII	GAAGA	1 cut(s)	268
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	3 cut(s)	35, 248, 334
MseI	TTAA	3 cut(s)	11, 90, 428
MslI	CAYNNNNRTG	1 cut(s)	449
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	305, 315
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	272, 281, 290
NciI	CCSGG	1 cut(s)	305
NlaIII	CATG	1 cut(s)	364
NlaIV	GGNNCC	1 cut(s)	319
NspI	RCATGY	1 cut(s)	364
PaeI	GCATGC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	235
PshBI	ATTAAT	1 cut(s)	428
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	2 cut(s)	235, 441
PspPPI	RGGWCCY	1 cut(s)	235
PstNI	CAGNNNCTG	2 cut(s)	218, 314
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	3 cut(s)	11, 90, 428
SatI	GCNGC	1 cut(s)	264
Sau96I	GGNCC	2 cut(s)	235, 441
ScrFI	CCNGG	2 cut(s)	305, 315
SinI	GGWCC	2 cut(s)	235, 441
SmiMI	CAYNNNNRTG	1 cut(s)	449
SphI	GCATGC	1 cut(s)	364
Sse9I	AATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	170
StyD4I	CCNGG	2 cut(s)	303, 313
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	1 cut(s)	334
TaqI	TCGA	1 cut(s)	339
TasI	AATT	1 cut(s)	31
TatI	WGTACW	1 cut(s)	327
Tru1I	TTAA	3 cut(s)	11, 90, 428
Tru9I	TTAA	3 cut(s)	11, 90, 428
TscAI	CASTG	1 cut(s)	315
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	17, 87, 423
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	1 cut(s)	315
VpaK11BI	GGWCC	2 cut(s)	235, 441
VspI	ATTAAT	1 cut(s)	428
XagI	CCTNNNNNAGG	1 cut(s)	242
XceI	RCATGY	1 cut(s)	364
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.