FvH4_2g24170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012247
Physical Location & Seq
Reverse (-)
19729509 .. 19731103
1595 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24170.t1

Sequence Viewer

Length: 666 bp
ATGAACACCTTAACTTCAACATCTCTCTGCAATTATCAAGTTTCAAGATTTCCTTCTAACATTTCAAACCAGAGGAACATATCAGCAATTAAAACTTCATTTCCTAGCAAAATCTGCTTCAAAGTCTATGCCAATGTCAATGCCAATACAAATGAGCTAGAAGCTGAACCAAAACAAGAACAAGAAGCTCAACCAAAGGAAGCAACCAAGTCTTCTTCTAAATCAGCAACTGCTCCACTTGATCAGGACCTCAAAAAGGTTGTTCAGAAGACTGCTGCAACATTTGCACCAAGGGCATCCACAGCAAGCAAAAATCCAGCGGTGCCTGGTTCCGTCTTGTACACTGTTTTCGAGGTGCAAGCTTATGCCTGCATGCTCTTAGGTGGAGTTCTGTCTTTCAATCTCATATTCCCTTCAAATGAACCAGATCTTTGGAGATTAATGGGAATGTGGTCCATTTGGATGTTTACAATTCCTTCACTTCGTGCGAGAGACTGCTCGAAAAATGAGAAGGAAGCTTTGAACTATCTCTTTCTCCTGGTTCCATTGCTCAATGTGACAATCCCATTTTTTGTGAAGTCATTTGCAGTTGTTTGGTCTGCTGATACCGTAGCCTTCTTTGCCATGTATGCATGGAAGCTGGGGTGGCTTCAAAGAGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.76

Weight (kDa)

9.01

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012247)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48070 AT2G48070 AT2G48070
fragaria_vesca FvH4_2g24170
malus_domestica MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica Prupe.8G247900_v2.0.a1
pyrus_communis pycom03g21620
rosa_chinensis RchiOBHm_Chr6g0291981
rosa_laevigata RLG00000012073
rosa_multiflora Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii Rroxscaffold_7G00175520
rosa_rugosa Rorug06G0222200
rosa_samantha Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana Rw6G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AciI CCGC 1 cut(s) 320
AdeI CACNNNGTG 1 cut(s) 485
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 8 cut(s) 18, 45, 66, 121, 400, 417, 523, 653
AjnI CCWGG 2 cut(s) 325, 537
AluBI AGCT 6 cut(s) 157, 164, 188, 362, 518, 640
AluI AGCT 6 cut(s) 157, 164, 188, 362, 518, 640
Alw26I GTCTC 1 cut(s) 486
AlwNI CAGNNNCTG 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 275
AseI ATTAAT 1 cut(s) 440
AspS9I GGNCC 2 cut(s) 247, 453
AvaII GGWCC 2 cut(s) 247, 453
BanI GGYRCC 1 cut(s) 322
BbsI GAAGAC 2 cut(s) 204, 275
BbvI GCAGC 1 cut(s) 262
BciT130I CCWGG 2 cut(s) 327, 539
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 486
BfaI CTAG 2 cut(s) 105, 158
BglII AGATCT 1 cut(s) 427
BisI GCNGC 1 cut(s) 276
BlsI GCNGC 1 cut(s) 277
Bme1390I CCNGG 2 cut(s) 327, 539
Bme18I GGWCC 2 cut(s) 247, 453
BmgT120I GGNCC 2 cut(s) 247, 453
BmiI GGNNCC 3 cut(s) 324, 331, 543
BmrFI CCNGG 2 cut(s) 327, 539
BmsI GCATC 1 cut(s) 305
BpiI GAAGAC 2 cut(s) 204, 275
BsaJI CCNNGG 1 cut(s) 290
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 545
BseBI CCWGG 2 cut(s) 327, 539
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 2 cut(s) 296, 468
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 545
BseXI GCAGC 1 cut(s) 262
BseYI CCCAGC 1 cut(s) 640
BshNI GGYRCC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 486
Bsp1407I TGTACA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 241, 427
BspACI CCGC 1 cut(s) 320
BspLI GGNNCC 3 cut(s) 324, 331, 543
BspT107I GGYRCC 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 545
BsrGI TGTACA 1 cut(s) 339
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 2 cut(s) 241, 427
BssT1I CCWWGG 1 cut(s) 290
Bst2UI CCWGG 2 cut(s) 327, 539
Bst4CI ACNGT 2 cut(s) 346, 610
Bst6I CTCTTC 1 cut(s) 654
BstAPI GCANNNNNTGC 2 cut(s) 114, 284
BstAUI TGTACA 1 cut(s) 339
BstC8I GCNNGC 4 cut(s) 307, 360, 370, 374
BstDEI CTNAG 1 cut(s) 379
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 2 cut(s) 296, 468
BstKTI GATC 2 cut(s) 244, 430
BstMAI GTCTC 1 cut(s) 486
BstMBI GATC 2 cut(s) 241, 427
BstMWI GCNNNNNNNGC 7 cut(s) 114, 284, 293, 302, 620, 629, 646
BstNI CCWGG 2 cut(s) 327, 539
BstNSI RCATGY 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 325, 537
BstV1I GCAGC 1 cut(s) 262
BstV2I GAAGAC 2 cut(s) 204, 275
BstX2I RGATCY 1 cut(s) 427
BstXI CCANNNNNNTGG 1 cut(s) 432
BstYI RGATCY 1 cut(s) 427
BtsCI GGATG 2 cut(s) 296, 468
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 4 cut(s) 307, 360, 370, 374
CaiI CAGNNNCTG 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 247, 453
Csp6I GTAC 1 cut(s) 340
CviAII CATG 3 cut(s) 373, 625, 633
CviJI RGCY 8 cut(s) 157, 164, 188, 362, 518, 614, 640, 649
CviKI_1 RGCY 8 cut(s) 157, 164, 188, 362, 518, 614, 640, 649
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 379
DpnI GATC 2 cut(s) 243, 429
DpnII GATC 2 cut(s) 241, 427
DraIII CACNNNGTG 1 cut(s) 485
Eam1104I CTCTTC 1 cut(s) 654
EarI CTCTTC 1 cut(s) 654
Eco130I CCWWGG 1 cut(s) 290
Eco47I GGWCC 2 cut(s) 247, 453
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 247
EcoRII CCWGG 2 cut(s) 325, 537
EcoT14I CCWWGG 1 cut(s) 290
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 3 cut(s) 376, 628, 636
FaiI YATR 8 cut(s) 80, 129, 366, 374, 407, 626, 630, 634
FalI AAGNNNNNCTT 2 cut(s) 37, 69
FatI CATG 3 cut(s) 372, 624, 632
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 2 cut(s) 283, 475
Fsp4HI GCNGC 1 cut(s) 276
FspBI CTAG 2 cut(s) 105, 158
GluI GCNGC 1 cut(s) 276
GsaI CCCAGC 1 cut(s) 644
Hin1II CATG 3 cut(s) 376, 628, 636
HindIII AAGCTT 2 cut(s) 360, 516
Hpy166II GTNNAC 2 cut(s) 342, 468
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 2 cut(s) 45, 245
Hpy8I GTNNAC 2 cut(s) 342, 468
HpyAV CCTTC 5 cut(s) 63, 423, 486, 505, 625
HpyCH4III ACNGT 2 cut(s) 346, 610
HpyCH4V TGCA 7 cut(s) 30, 278, 287, 358, 372, 587, 632
HpyF10VI GCNNNNNNNGC 7 cut(s) 114, 284, 293, 302, 620, 629, 646
HpyF3I CTNAG 1 cut(s) 379
Hsp92II CATG 3 cut(s) 376, 628, 636
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 2 cut(s) 241, 427
LmnI GCTCC 1 cut(s) 238
Lsp1109I GCAGC 1 cut(s) 262
LweI GCATC 1 cut(s) 305
MaeI CTAG 2 cut(s) 105, 158
MaeIII GTNAC 1 cut(s) 556
MalI GATC 2 cut(s) 243, 429
MboI GATC 2 cut(s) 241, 427
MboII GAAGA 3 cut(s) 204, 207, 280
MflI RGATCY 1 cut(s) 427
MluCI AATT 3 cut(s) 31, 87, 471
MnlI CCTC 3 cut(s) 66, 260, 346
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 3 cut(s) 11, 90, 440
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 327, 539
MvaI CCWGG 2 cut(s) 327, 539
MwoI GCNNNNNNNGC 7 cut(s) 114, 284, 293, 302, 620, 629, 646
NdeII GATC 2 cut(s) 241, 427
NlaIII CATG 3 cut(s) 376, 628, 636
NlaIV GGNNCC 3 cut(s) 324, 331, 543
NmuCI GTSAC 1 cut(s) 556
NsiI ATGCAT 1 cut(s) 634
NspI RCATGY 1 cut(s) 376
PaeI GCATGC 1 cut(s) 376
PkrI GCNGC 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 247
PshBI ATTAAT 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 247
Psp6I CCWGG 2 cut(s) 325, 537
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 2 cut(s) 325, 537
PspN4I GGNNCC 3 cut(s) 324, 331, 543
PspPI GGNCC 2 cut(s) 247, 453
PspPPI RGGWCCY 1 cut(s) 247
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 427
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 3 cut(s) 11, 90, 440
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 2 cut(s) 241, 427
Sau96I GGNCC 2 cut(s) 247, 453
ScrFI CCNGG 2 cut(s) 327, 539
SfaNI GCATC 1 cut(s) 305
SinI GGWCC 2 cut(s) 247, 453
SmiMI CAYNNNNRTG 1 cut(s) 461
SphI GCATGC 1 cut(s) 376
Sse9I AATT 3 cut(s) 31, 87, 471
SsiI CCGC 1 cut(s) 320
SspMI CTAG 2 cut(s) 105, 158
StyD4I CCNGG 2 cut(s) 325, 537
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 346, 610
TaqI TCGA 2 cut(s) 351, 500
TasI AATT 3 cut(s) 31, 87, 471
TatI WGTACW 1 cut(s) 339
Tru1I TTAA 3 cut(s) 11, 90, 440
Tru9I TTAA 3 cut(s) 11, 90, 440
TscAI CASTG 1 cut(s) 349
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 3 cut(s) 17, 87, 435
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 247, 453
VspI ATTAAT 1 cut(s) 440
XagI CCTNNNNNAGG 1 cut(s) 254
XceI RCATGY 1 cut(s) 376
XspI CTAG 2 cut(s) 105, 158
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.