Rmu_sc0042914.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042914.1
OG0012247
Physical Location & Seq
Forward (+)
1 .. 1003
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042914.1_g000001.1.cds

Sequence Viewer

Length: 436 bp
aaccaagccttctactatatcagctactgcaccacttgataaggacctcaaaaaggttgttcagaagactgctgcaacatttgcaccaagggcttcaacagcaagcaaaaacccggcagtgcctggttccgtcttgtacaccgttttcgaggttcaagcttatgcctgcatgctcttaggtggagttctgtcttacaatctcatattcccatcaaatgaaccagacctttggagattaatgggaatgtggtccatttggatgtttacaattccttcactgcgtgcccgagactgctcgaaaaatgagaaggaagctctgaactatctttttctccttgttccattactcaacgtgacaatcccatttttcgtcaagtcgtttgcggttgtttggtctgctgataccgtagccttctttgccatgtatgcgtggaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.17

Weight (kDa)

9.33

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012247)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48070 AT2G48070 AT2G48070
fragaria_vesca FvH4_2g24170
malus_domestica MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica Prupe.8G247900_v2.0.a1
pyrus_communis pycom03g21620
rosa_chinensis RchiOBHm_Chr6g0291981
rosa_laevigata RLG00000012073
rosa_multiflora Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii Rroxscaffold_7G00175520
rosa_rugosa Rorug06G0222200
rosa_samantha Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana Rw6G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 384
AdeI CACNNNGTG 1 cut(s) 282
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 53
AgsI TTSAA 2 cut(s) 97, 156
AjnI CCWGG 1 cut(s) 122
AluBI AGCT 3 cut(s) 24, 159, 315
AluI AGCT 3 cut(s) 24, 159, 315
Alw26I GTCTC 1 cut(s) 283
AlwNI CAGNNNCTG 2 cut(s) 27, 123
Ama87I CYCGRG 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 72
AseI ATTAAT 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 44, 250
AsuC2I CCSGG 1 cut(s) 114
AvaI CYCGRG 1 cut(s) 286
AvaII GGWCC 2 cut(s) 44, 250
BaeGI GKGCMC 1 cut(s) 287
BbsI GAAGAC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 59
BccI CCATC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 124
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 283
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 2 cut(s) 114, 124
Bme18I GGWCC 2 cut(s) 44, 250
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 44, 250
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 2 cut(s) 114, 124
BpiI GAAGAC 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 53
BseBI CCWGG 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 53
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 1 cut(s) 59
BsgI GTGCAG 1 cut(s) 13
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 283
BsoBI CYCGRG 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 287
Bsp1407I TGTACA 1 cut(s) 136
BspACI CCGC 1 cut(s) 384
BspLI GGNNCC 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 143, 407
BstAPI GCANNNNNTGC 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 136
BstC8I GCNNGC 4 cut(s) 104, 167, 171, 283
BstDEI CTNAG 1 cut(s) 176
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 283
BstMWI GCNNNNNNNGC 5 cut(s) 81, 90, 99, 417, 426
BstNI CCWGG 1 cut(s) 124
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 112, 122
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 59
BstV2I GAAGAC 1 cut(s) 72
BstXI CCANNNNNNTGG 1 cut(s) 229
BtsCI GGATG 1 cut(s) 265
BtsI GCAGTG 2 cut(s) 124, 276
BtsIMutI CAGTG 2 cut(s) 124, 276
Cac8I GCNNGC 4 cut(s) 104, 167, 171, 283
CaiI CAGNNNCTG 2 cut(s) 27, 123
Cfr13I GGNCC 2 cut(s) 44, 250
Csp6I GTAC 1 cut(s) 137
CviAII CATG 2 cut(s) 170, 422
CviJI RGCY 6 cut(s) 8, 24, 93, 159, 315, 411
CviKI_1 RGCY 6 cut(s) 8, 24, 93, 159, 315, 411
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 1 cut(s) 176
DraIII CACNNNGTG 1 cut(s) 282
Eco130I CCWWGG 1 cut(s) 87
Eco47I GGWCC 2 cut(s) 44, 250
Eco88I CYCGRG 1 cut(s) 286
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 2 cut(s) 173, 425
FaiI YATR 6 cut(s) 18, 163, 171, 204, 423, 427
FatI CATG 2 cut(s) 169, 421
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 73
HapII CCGG 1 cut(s) 114
Hin1II CATG 2 cut(s) 173, 425
HindIII AAGCTT 1 cut(s) 157
HpaII CCGG 1 cut(s) 114
Hpy166II GTNNAC 2 cut(s) 139, 265
Hpy188I TCNGA 2 cut(s) 64, 319
Hpy8I GTNNAC 2 cut(s) 139, 265
HpyAV CCTTC 4 cut(s) 19, 283, 302, 422
HpyCH4III ACNGT 2 cut(s) 143, 407
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 4 cut(s) 30, 75, 84, 169
HpyF10VI GCNNNNNNNGC 5 cut(s) 81, 90, 99, 417, 426
HpyF3I CTNAG 1 cut(s) 176
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 2 cut(s) 173, 425
LpnPI CCDG 5 cut(s) 109, 127, 136, 179, 235
Lsp1109I GCAGC 1 cut(s) 59
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 1 cut(s) 353
MboII GAAGA 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 1 cut(s) 268
MnlI CCTC 2 cut(s) 57, 143
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 258
MspI CCGG 1 cut(s) 114
MspR9I CCNGG 2 cut(s) 114, 124
MvaI CCWGG 1 cut(s) 124
MwoI GCNNNNNNNGC 5 cut(s) 81, 90, 99, 417, 426
NciI CCSGG 1 cut(s) 114
NlaIII CATG 2 cut(s) 173, 425
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 353
NspI RCATGY 1 cut(s) 173
PaeI GCATGC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 74
PpuMI RGGWCCY 1 cut(s) 44
PshBI ATTAAT 1 cut(s) 237
Psp5II RGGWCCY 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 2 cut(s) 44, 250
PspPPI RGGWCCY 1 cut(s) 44
PstNI CAGNNNCTG 2 cut(s) 27, 123
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 258
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 1 cut(s) 73
Sau96I GGNCC 2 cut(s) 44, 250
ScrFI CCNGG 2 cut(s) 114, 124
SduI GDGCHC 1 cut(s) 287
SetI ASST 9 cut(s) 26, 49, 58, 154, 161, 182, 229, 317, 355
SinI GGWCC 2 cut(s) 44, 250
SmiMI CAYNNNNRTG 1 cut(s) 258
SphI GCATGC 1 cut(s) 173
Sse9I AATT 1 cut(s) 268
SsiI CCGC 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 112, 122
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 143, 407
TaiI ACGT 1 cut(s) 355
TaqI TCGA 2 cut(s) 148, 297
TasI AATT 1 cut(s) 268
TatI WGTACW 1 cut(s) 136
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 124, 283
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 2 cut(s) 124, 283
VpaK11BI GGWCC 2 cut(s) 44, 250
VspI ATTAAT 1 cut(s) 237
XagI CCTNNNNNAGG 1 cut(s) 51
XceI RCATGY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.