RLG00000012073

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012247
Physical Location & Seq
Forward (+)
15012376 .. 15013624
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012073

Sequence Viewer

Length: 669 bp
ATGAACACCTTAACTACTTCAACATCCCTCTGCAATTATCAAGTTTCAAGATTTCCTTCTAACATTTCAAACCAGAGAAACATATCACCCTTTAATACTTCATTTCCTACCAAAATCTGCTTCAAAGTTTATGCCAATGCCAATGCCAATACCAATGAGTTAGAAGCTGAATCGAAACAAGAGCTAGAAGCTCAACCAAAGGAAGCAACCAAGCCTTCTACTATATCAGCTACTGCACCACTTGATAAGGACCTCAAAAAGGTTGTTCAGAAGACTGCTGCAACATTTGCACCAAGGGCTTCAACAGCAAGCAAAAACCCGGCCGTGCCTGGTTCCGTCTTGTACACCGTTTTCGAGGTTCAAGCTTATGCCTGCATGCTCCTAGGTGGAGTTCTGTCTTACAATCTCATATTCCCATCAAATGAACCAGACCTTTGGAGATTAATGGGAATGTGGTCCATTTGGATGTTTACAATTCCTTCACTGCGTGCCCGAGACTGCTCAAAAAATGAGAAGGAAGCTCTGAACTATCTCTTTCTCCTTGTTCCATTACTCAACGTGACAATCCCATTTTTCGTGAAGTCGTTTGCAGTTGTTTGGTCTGCTGATACCGTAGCCTTCTTTGCCATGTATGCATGGAAGTTGGGGTGGCTACAAAGAGAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.88

Weight (kDa)

8.84

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012247)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48070 AT2G48070 AT2G48070
fragaria_vesca FvH4_2g24170
malus_domestica MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica Prupe.8G247900_v2.0.a1
pyrus_communis pycom03g21620
rosa_chinensis RchiOBHm_Chr6g0291981
rosa_laevigata RLG00000012073
rosa_multiflora Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii Rroxscaffold_7G00175520
rosa_rugosa Rorug06G0222200
rosa_samantha Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana Rw6G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 321
AdeI CACNNNGTG 1 cut(s) 488
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 259
AgsI TTSAA 6 cut(s) 21, 48, 69, 124, 303, 362
AjnI CCWGG 1 cut(s) 328
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 6 cut(s) 167, 184, 191, 230, 365, 521
AluI AGCT 6 cut(s) 167, 184, 191, 230, 365, 521
Alw26I GTCTC 1 cut(s) 489
AlwNI CAGNNNCTG 1 cut(s) 233
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 278
AseI ATTAAT 1 cut(s) 443
AspA2I CCTAGG 1 cut(s) 382
AspS9I GGNCC 2 cut(s) 250, 456
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 78
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 2 cut(s) 250, 456
AvrII CCTAGG 1 cut(s) 382
BaeGI GKGCMC 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 424
BceAI ACGGC 1 cut(s) 308
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 3 cut(s) 185, 383, 667
BisI GCNGC 1 cut(s) 279
BlnI CCTAGG 1 cut(s) 382
BlsI GCNGC 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 320, 330
Bme18I GGWCC 2 cut(s) 250, 456
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 2 cut(s) 250, 456
BmiI GGNNCC 1 cut(s) 334
BmrFI CCNGG 2 cut(s) 320, 330
BpiI GAAGAC 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 320
BsaJI CCNNGG 2 cut(s) 293, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 2 cut(s) 293, 382
BseGI GGATG 2 cut(s) 23, 471
BseLI CCNNNNNNNGG 1 cut(s) 259
BseSI GKGCMC 1 cut(s) 493
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 265
BsgI GTGCAG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 1 cut(s) 323
BsiEI CGRYCG 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 489
BsnI GGCC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 492
Bsp1286I GDGCHC 1 cut(s) 493
Bsp1407I TGTACA 1 cut(s) 342
BspANI GGCC 1 cut(s) 323
BspLI GGNNCC 1 cut(s) 334
BsrGI TGTACA 1 cut(s) 342
BssECI CCNNGG 2 cut(s) 293, 382
BssT1I CCWWGG 2 cut(s) 293, 382
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 349, 613
BstAPI GCANNNNNTGC 1 cut(s) 287
BstAUI TGTACA 1 cut(s) 342
BstC8I GCNNGC 4 cut(s) 310, 373, 377, 489
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 2 cut(s) 23, 471
BstMAI GTCTC 1 cut(s) 489
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 5 cut(s) 287, 296, 305, 623, 632
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 379
BstSCI CCNGG 2 cut(s) 318, 328
BstSLI GKGCMC 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 265
BstV2I GAAGAC 1 cut(s) 278
BstXI CCANNNNNNTGG 1 cut(s) 435
BstZI CGGCCG 1 cut(s) 321
BsuRI GGCC 1 cut(s) 323
BtsCI GGATG 2 cut(s) 23, 471
BtsI GCAGTG 1 cut(s) 482
BtsIMutI CAGTG 1 cut(s) 482
Cac8I GCNNGC 4 cut(s) 310, 373, 377, 489
CaiI CAGNNNCTG 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 250, 456
Csp6I GTAC 1 cut(s) 343
CviAII CATG 3 cut(s) 376, 628, 636
CviQI GTAC 1 cut(s) 343
DraIII CACNNNGTG 1 cut(s) 488
EaeI YGGCCR 1 cut(s) 321
EagI CGGCCG 1 cut(s) 321
EclXI CGGCCG 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 293, 382
Eco47I GGWCC 2 cut(s) 250, 456
Eco52I CGGCCG 1 cut(s) 321
Eco88I CYCGRG 1 cut(s) 492
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 293, 382
EcoT22I ATGCAT 1 cut(s) 637
ErhI CCWWGG 2 cut(s) 293, 382
FaeI CATG 3 cut(s) 379, 631, 639
FaiI YATR 9 cut(s) 83, 132, 224, 369, 377, 410, 629, 633, 637
FalI AAGNNNNNCTT 2 cut(s) 40, 72
FatI CATG 3 cut(s) 375, 627, 635
Fnu4HI GCNGC 1 cut(s) 279
FokI GGATG 2 cut(s) 10, 478
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 3 cut(s) 185, 383, 667
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 323
HapII CCGG 1 cut(s) 320
Hin1II CATG 3 cut(s) 379, 631, 639
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 78
Hpy166II GTNNAC 2 cut(s) 345, 471
Hpy188I TCNGA 2 cut(s) 270, 525
Hpy188III TCNNGA 2 cut(s) 48, 577
Hpy8I GTNNAC 2 cut(s) 345, 471
HpyAV CCTTC 5 cut(s) 66, 225, 489, 508, 628
HpyCH4III ACNGT 2 cut(s) 349, 613
HpyCH4IV ACGT 1 cut(s) 558
HpyCH4V TGCA 7 cut(s) 33, 236, 281, 290, 375, 590, 635
HpyF10VI GCNNNNNNNGC 5 cut(s) 287, 296, 305, 623, 632
HpySE526I ACGT 1 cut(s) 558
Hsp92II CATG 3 cut(s) 379, 631, 639
LmnI GCTCC 1 cut(s) 384
LpnPI CCDG 6 cut(s) 86, 315, 333, 342, 385, 441
Lsp1109I GCAGC 1 cut(s) 265
MaeI CTAG 3 cut(s) 185, 383, 667
MaeII ACGT 1 cut(s) 558
MaeIII GTNAC 1 cut(s) 559
MboII GAAGA 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 2 cut(s) 34, 474
MnlI CCTC 3 cut(s) 38, 263, 349
Mph1103I ATGCAT 1 cut(s) 637
MseI TTAA 3 cut(s) 11, 93, 443
MslI CAYNNNNRTG 1 cut(s) 464
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 320, 330
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 5 cut(s) 287, 296, 305, 623, 632
NciI CCSGG 1 cut(s) 320
NlaIII CATG 3 cut(s) 379, 631, 639
NlaIV GGNNCC 1 cut(s) 334
NmuCI GTSAC 1 cut(s) 559
NsiI ATGCAT 1 cut(s) 637
NspI RCATGY 1 cut(s) 379
PaeI GCATGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 170
PkrI GCNGC 1 cut(s) 280
PpuMI RGGWCCY 1 cut(s) 250
PshBI ATTAAT 1 cut(s) 443
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 334
PspPI GGNCC 2 cut(s) 250, 456
PspPPI RGGWCCY 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 3 cut(s) 11, 93, 443
SatI GCNGC 1 cut(s) 279
Sau96I GGNCC 2 cut(s) 250, 456
ScrFI CCNGG 2 cut(s) 320, 330
SduI GDGCHC 1 cut(s) 493
SinI GGWCC 2 cut(s) 250, 456
SmiMI CAYNNNNRTG 1 cut(s) 464
SphI GCATGC 1 cut(s) 379
Sse9I AATT 2 cut(s) 34, 474
SspMI CTAG 3 cut(s) 185, 383, 667
StyD4I CCNGG 2 cut(s) 318, 328
StyI CCWWGG 2 cut(s) 293, 382
TaaI ACNGT 2 cut(s) 349, 613
TaiI ACGT 1 cut(s) 561
TaqI TCGA 2 cut(s) 173, 354
TasI AATT 2 cut(s) 34, 474
TatI WGTACW 1 cut(s) 342
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 3 cut(s) 11, 93, 443
Tru9I TTAA 3 cut(s) 11, 93, 443
TscAI CASTG 1 cut(s) 489
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 3 cut(s) 17, 90, 438
TspGWI ACGGA 1 cut(s) 325
TspRI CASTG 1 cut(s) 489
VpaK11BI GGWCC 2 cut(s) 250, 456
VspI ATTAAT 1 cut(s) 443
XagI CCTNNNNNAGG 1 cut(s) 257
XceI RCATGY 1 cut(s) 379
XmaJI CCTAGG 1 cut(s) 382
XspI CTAG 3 cut(s) 185, 383, 667
Zsp2I ATGCAT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.