Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012247

Physical Location & Seq

Genomic Coordinates Reverse (-)

54072084 .. 54075233

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG336400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAACACCTTAACTTCAACATCCCTCTGCAATTATCAAGTTTCAAGATTTCCTTCTAACATTTCAAACCAGAGAAACATATCACCCTTTAATACTTCATTTCCTACCAAAATCTGCTTCAAAGTTTATGCCAATGCCAATGCCAATACCAATGACTTAGAAGCTGAACCGAAACAAGAGCTAGAAGCTCAACCAAAGGAAGCAACCAAGCCTTCTACTATATCAGCTACTGCACCACTTGATAAGGACCTCAAAAAGGTTGTTCAGAAGACTGCTGCAACATTTGCACCAAGGGCTTCAACAGCAAGCAAAAACCCGGCAGTGCCTGGTTCCGTCTTGTACACCGTTTTCGAGGTTCAAGCTTATGCCTGCATGCTCTTAGGTGGAGTTCTGTCTTACAATCTCATATTCCCATCAAATGAACCAGACCTTTGGAGATTAATGGGAATGTGGTCCATTTGGATGTTTAGTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.47

Weight (kDa)

9.01

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48070 AT2G48070 AT2G48070
fragaria_vesca	FvH4_2g24170
malus_domestica	MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica	Prupe.8G247900_v2.0.a1
pyrus_communis	pycom03g21620
rosa_chinensis	RchiOBHm_Chr6g0291981
rosa_laevigata	RLG00000012073
rosa_multiflora	Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175520
rosa_rugosa	Rorug06G0222200
rosa_samantha	Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana	Rw6G029250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	6 cut(s)	18, 45, 66, 121, 300, 359
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	5 cut(s)	164, 181, 188, 227, 362
AluI	AGCT	5 cut(s)	164, 181, 188, 227, 362
AlwNI	CAGNNNCTG	2 cut(s)	230, 326
ApeKI	GCWGC	1 cut(s)	275
AseI	ATTAAT	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	247, 453
AsuC2I	CCSGG	1 cut(s)	317
AsuHPI	GGTGA	1 cut(s)	75
AvaII	GGWCC	2 cut(s)	247, 453
BbsI	GAAGAC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	1 cut(s)	421
BciT130I	CCWGG	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	317
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	317, 327
Bme18I	GGWCC	2 cut(s)	247, 453
BmgT120I	GGNCC	2 cut(s)	247, 453
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	2 cut(s)	317, 327
BpiI	GAAGAC	1 cut(s)	275
BpuMI	CCSGG	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	2 cut(s)	20, 468
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	262
BsgI	GTGCAG	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	256
Bsp1407I	TGTACA	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	331
BsrGI	TGTACA	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	290
BssT1I	CCWWGG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	346
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	3 cut(s)	307, 370, 374
BstDEI	CTNAG	2 cut(s)	157, 379
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	20, 468
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 293, 302
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	376
BstSCI	CCNGG	2 cut(s)	315, 325
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	432
BtsCI	GGATG	2 cut(s)	20, 468
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	3 cut(s)	307, 370, 374
CaiI	CAGNNNCTG	2 cut(s)	230, 326
Cfr13I	GGNCC	2 cut(s)	247, 453
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	1 cut(s)	373
CviJI	RGCY	7 cut(s)	164, 181, 188, 211, 227, 296, 362
CviKI_1	RGCY	7 cut(s)	164, 181, 188, 211, 227, 296, 362
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	2 cut(s)	157, 379
Eco130I	CCWWGG	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	247, 453
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoO109I	RGGNCCY	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	1 cut(s)	376
FaiI	YATR	6 cut(s)	80, 129, 221, 366, 374, 407
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FatI	CATG	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	182
GluI	GCNGC	1 cut(s)	276
HapII	CCGG	1 cut(s)	317
Hin1II	CATG	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	360
HpaII	CCGG	1 cut(s)	317
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	1 cut(s)	342
Hpy188I	TCNGA	1 cut(s)	267
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	1 cut(s)	342
HpyAV	CCTTC	2 cut(s)	63, 222
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	5 cut(s)	30, 233, 278, 287, 372
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 293, 302
HpyF3I	CTNAG	2 cut(s)	157, 379
Hsp92II	CATG	1 cut(s)	376
LpnPI	CCDG	6 cut(s)	83, 312, 330, 339, 382, 438
Lsp1109I	GCAGC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	182
MboII	GAAGA	1 cut(s)	280
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	3 cut(s)	35, 260, 346
MseI	TTAA	3 cut(s)	11, 90, 440
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	1 cut(s)	317
MspR9I	CCNGG	2 cut(s)	317, 327
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	284, 293, 302
NciI	CCSGG	1 cut(s)	317
NlaIII	CATG	1 cut(s)	376
NlaIV	GGNNCC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	376
PaeI	GCATGC	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	440
Psp5II	RGGWCCY	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	2 cut(s)	247, 453
PspPPI	RGGWCCY	1 cut(s)	247
PstNI	CAGNNNCTG	2 cut(s)	230, 326
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	3 cut(s)	11, 90, 440
SatI	GCNGC	1 cut(s)	276
Sau96I	GGNCC	2 cut(s)	247, 453
ScrFI	CCNGG	2 cut(s)	317, 327
SinI	GGWCC	2 cut(s)	247, 453
SmiMI	CAYNNNNRTG	1 cut(s)	461
SphI	GCATGC	1 cut(s)	376
Sse9I	AATT	1 cut(s)	31
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	315, 325
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	351
TasI	AATT	1 cut(s)	31
TatI	WGTACW	1 cut(s)	339
Tru1I	TTAA	3 cut(s)	11, 90, 440
Tru9I	TTAA	3 cut(s)	11, 90, 440
TscAI	CASTG	1 cut(s)	327
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	3 cut(s)	17, 87, 435
TspGWI	ACGGA	1 cut(s)	322
TspRI	CASTG	1 cut(s)	327
VpaK11BI	GGWCC	2 cut(s)	247, 453
VspI	ATTAAT	1 cut(s)	440
XagI	CCTNNNNNAGG	1 cut(s)	254
XceI	RCATGY	1 cut(s)	376
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.