MD11G1292300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012247
Physical Location & Seq
Reverse (-)
41189278 .. 41192020
2743 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1292300.v1.1.491

Sequence Viewer

Length: 723 bp
ATGAACACATTAACTTCAACCACTCTCTGCAACTTCCAAGTTTCAAGATATCCGTTCACCGTTTCGAACCCGAGAAACGTTTCACCCTGCAATTCTCCCTTTCCCACCAAAATTTTCTTCAGACTTTATGCCAATGCCAATGAGCTCGATGCTCCGGCAGCAGTGGAGGAACCAAAGCAAGAGCCAGAAGAAGCTGAGCCACCGGAAGCCGGAAAGTCCTCCACTTTCTCTGCTGCTGCTTCTCCACTCGACAAGGACCTCAAAAAGGTTGTTCAGAAGACTGCTGCAACCTTTGCACCAAGGGCTTCCACAGCTTCCAAAAACCCCGCTGTGCCCGGTAGTACCCTCTACACTGTTTTCGAGGTTCAAGCCTATGCCTCCATGCTGCTAGGTGGAGTTCTGTCATTCAATCTCATCTTCCCATCGAACGAACCAGACATATGGAGATTAATGGGAATGTGGTCCATTTGGATGTTTACAATTCCTTCACTGCGTGCACGAGACTGCTCGAAAAATGAGAAGGAAGCTCTAAACTATCTCTTCCTCCTCGTCCCGTTACTCAATGTTACAATCCCATTCTTTGTGAAGTCCTTTGCTGTCGTTTGGTCTGCTGATACCGTAGCCTTTTTCGCCATGTATGCGTGGAAGTCTGTTTCTACAGCTTGGGTGGCTAGAAAGAAAAGACTAGGAATCGAAGTTGCTTGCTCGTTTCAAATCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.62

Weight (kDa)

8.86

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012247)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G48070 AT2G48070 AT2G48070
fragaria_vesca FvH4_2g24170
malus_domestica MD03G1271700.v1.1 MD11G1292300.v1.1
prunus_persica Prupe.8G247900_v2.0.a1
pyrus_communis pycom03g21620
rosa_chinensis RchiOBHm_Chr6g0291981
rosa_laevigata RLG00000012073
rosa_multiflora Rmu_sc0026994.1_g000003 Rmu_sc0042914.1_g000001
rosa_roxburghii Rroxscaffold_7G00175520
rosa_rugosa Rorug06G0222200
rosa_samantha Rh6AG336000 Rh6BG343400 Rh6CG349600 Rh6DG336400
rosa_wichuraiana Rw6G029250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 327
AclI AACGTT 1 cut(s) 78
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 103
AdeI CACNNNGTG 1 cut(s) 494
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 2 cut(s) 209, 265
AgsI TTSAA 5 cut(s) 18, 45, 368, 409, 713
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
AluBI AGCT 5 cut(s) 145, 194, 314, 527, 662
AluI AGCT 5 cut(s) 145, 194, 314, 527, 662
Alw21I GWGCWC 2 cut(s) 147, 499
Alw26I GTCTC 1 cut(s) 495
Alw44I GTGCAC 1 cut(s) 495
Ama87I CYCGRG 1 cut(s) 70
ApaLI GTGCAC 1 cut(s) 495
ApeKI GCWGC 5 cut(s) 158, 233, 236, 284, 385
ApoI RAATTY 1 cut(s) 111
AseI ATTAAT 1 cut(s) 449
Asp700I GAANNNNTTC 1 cut(s) 79
AspS9I GGNCC 2 cut(s) 256, 462
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 49, 75
AsuII TTCGAA 1 cut(s) 65
AvaI CYCGRG 1 cut(s) 70
AvaII GGWCC 2 cut(s) 256, 462
BaeGI GKGCMC 2 cut(s) 336, 499
BanII GRGCYC 1 cut(s) 147
BauI CACGAG 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 2 cut(s) 147, 499
BbvI GCAGC 5 cut(s) 170, 220, 223, 271, 372
BccI CCATC 1 cut(s) 430
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 495
BfaI CTAG 3 cut(s) 389, 672, 686
BfmI CTRYAG 1 cut(s) 657
BisI GCNGC 5 cut(s) 159, 234, 237, 285, 386
BlpI GCTNAGC 1 cut(s) 195
BlsI GCNGC 5 cut(s) 160, 235, 238, 286, 387
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 2 cut(s) 256, 462
BmeT110I CYCGRG 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 256, 462
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 284
Bpu1102I GCTNAGC 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 65
BpuMI CCSGG 1 cut(s) 336
BsaJI CCNNGG 1 cut(s) 299
BsaWI WCCGGW 1 cut(s) 202
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 265
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 477
BseLI CCNNNNNNNGG 2 cut(s) 209, 265
BseMII CTCAG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 536
BseSI GKGCMC 2 cut(s) 336, 499
BseXI GCAGC 5 cut(s) 170, 220, 223, 271, 372
BsiHKAI GWGCWC 2 cut(s) 147, 499
BsiHKCI CYCGRG 1 cut(s) 70
BsiSI CCGG 4 cut(s) 155, 203, 210, 336
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 2 cut(s) 209, 265
BsmAI GTCTC 1 cut(s) 495
BsmFI GGGAC 1 cut(s) 536
BsoBI CYCGRG 1 cut(s) 70
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 3 cut(s) 147, 336, 499
Bsp1720I GCTNAGC 1 cut(s) 195
BspACI CCGC 1 cut(s) 327
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 299
BssSI CACGAG 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 299
Bst2BI CACGAG 1 cut(s) 498
Bst4CI ACNGT 3 cut(s) 61, 355, 619
Bst6I CTCTTC 1 cut(s) 545
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 495, 703
BstDEI CTNAG 1 cut(s) 195
BstENI CCTNNNNNAGG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 477
BstMAI GTCTC 1 cut(s) 495
BstMWI GCNNNNNNNGC 7 cut(s) 158, 293, 302, 311, 629, 638, 668
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 657
BstSLI GKGCMC 2 cut(s) 336, 499
BstV1I GCAGC 5 cut(s) 170, 220, 223, 271, 372
BstV2I GAAGAC 1 cut(s) 284
BstXI CCANNNNNNTGG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 477
BtsI GCAGTG 2 cut(s) 168, 488
BtsIMutI CAGTG 3 cut(s) 168, 351, 488
Cac8I GCNNGC 2 cut(s) 495, 703
Cfr13I GGNCC 2 cut(s) 256, 462
Csp6I GTAC 1 cut(s) 342
CviAII CATG 2 cut(s) 382, 634
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 1 cut(s) 195
DraIII CACNNNGTG 1 cut(s) 494
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 299
Eco24I GRGCYC 1 cut(s) 147
Eco32I GATATC 1 cut(s) 50
Eco47I GGWCC 2 cut(s) 256, 462
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 145
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoO109I RGGNCCY 1 cut(s) 256
EcoRV GATATC 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 299
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 2 cut(s) 385, 637
FaiI YATR 7 cut(s) 129, 375, 383, 440, 442, 635, 639
FaqI GGGAC 1 cut(s) 536
FatI CATG 2 cut(s) 381, 633
FauI CCCGC 1 cut(s) 334
FauNDI CATATG 1 cut(s) 440
Fnu4HI GCNGC 5 cut(s) 159, 234, 237, 285, 386
FokI GGATG 1 cut(s) 484
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 5 cut(s) 159, 234, 237, 285, 386
FspBI CTAG 3 cut(s) 389, 672, 686
GluI GCNGC 5 cut(s) 159, 234, 237, 285, 386
HapII CCGG 4 cut(s) 155, 203, 210, 336
Hin1II CATG 2 cut(s) 385, 637
HinfI GANTC 1 cut(s) 690
HpaII CCGG 4 cut(s) 155, 203, 210, 336
HphI GGTGA 2 cut(s) 49, 75
Hpy166II GTNNAC 3 cut(s) 57, 477, 497
Hpy188I TCNGA 2 cut(s) 122, 276
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 3 cut(s) 57, 477, 497
HpyAV CCTTC 2 cut(s) 495, 514
HpyCH4III ACNGT 3 cut(s) 61, 355, 619
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 5 cut(s) 30, 90, 287, 296, 497
HpyF10VI GCNNNNNNNGC 7 cut(s) 158, 293, 302, 311, 629, 638, 668
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 385, 637
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 7 cut(s) 100, 168, 198, 216, 223, 349, 447
Lsp1109I GCAGC 5 cut(s) 170, 220, 223, 271, 372
LweI GCATC 1 cut(s) 139
MaeI CTAG 3 cut(s) 389, 672, 686
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 2 cut(s) 555, 565
MboII GAAGA 5 cut(s) 109, 200, 289, 409, 532
MfeI CAATTG 1 cut(s) 718
MhlI GDGCHC 3 cut(s) 147, 336, 499
MluCI AATT 4 cut(s) 91, 111, 480, 718
MnlI CCTC 8 cut(s) 160, 229, 269, 355, 356, 388, 554, 557
MroXI GAANNNNTTC 1 cut(s) 79
MseI TTAA 2 cut(s) 11, 449
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 4 cut(s) 155, 203, 210, 336
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 718
MwoI GCNNNNNNNGC 7 cut(s) 158, 293, 302, 311, 629, 638, 668
NciI CCSGG 1 cut(s) 336
NdeI CATATG 1 cut(s) 440
NlaIII CATG 2 cut(s) 385, 637
NlaIV GGNNCC 1 cut(s) 171
NspV TTCGAA 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 690
PkrI GCNGC 5 cut(s) 160, 235, 238, 286, 387
PpuMI RGGWCCY 1 cut(s) 256
PshBI ATTAAT 1 cut(s) 449
Psp124BI GAGCTC 1 cut(s) 147
Psp1406I AACGTT 1 cut(s) 78
Psp5II RGGWCCY 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 171
PspPI GGNCC 2 cut(s) 256, 462
PspPPI RGGWCCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
RseI CAYNNNNRTG 1 cut(s) 470
SacI GAGCTC 1 cut(s) 147
SaqAI TTAA 2 cut(s) 11, 449
SatI GCNGC 5 cut(s) 159, 234, 237, 285, 386
Sau96I GGNCC 2 cut(s) 256, 462
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 3 cut(s) 147, 336, 499
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 1 cut(s) 657
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 2 cut(s) 256, 462
SmiMI CAYNNNNRTG 1 cut(s) 470
Sse9I AATT 4 cut(s) 91, 111, 480, 718
SsiI CCGC 1 cut(s) 327
SspMI CTAG 3 cut(s) 389, 672, 686
SstI GAGCTC 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 3 cut(s) 61, 355, 619
TaiI ACGT 1 cut(s) 81
TaqI TCGA 7 cut(s) 65, 147, 249, 360, 425, 509, 693
TasI AATT 4 cut(s) 91, 111, 480, 718
TfiI GAWTC 1 cut(s) 690
Tru1I TTAA 2 cut(s) 11, 449
Tru9I TTAA 2 cut(s) 11, 449
TscAI CASTG 3 cut(s) 168, 358, 495
TseI GCWGC 5 cut(s) 158, 233, 236, 284, 385
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 3 cut(s) 168, 358, 495
VneI GTGCAC 1 cut(s) 495
VpaK11BI GGWCC 2 cut(s) 256, 462
VspI ATTAAT 1 cut(s) 449
XagI CCTNNNNNAGG 1 cut(s) 263
XapI RAATTY 1 cut(s) 111
XmnI GAANNNNTTC 1 cut(s) 79
XspI CTAG 3 cut(s) 389, 672, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.