AT3G02080

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002976
Physical Location & Seq
Reverse (-)
363881 .. 365376
1496 bp
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UTR
Exon/CDS
Intron
AT3G02080.1

Sequence Viewer

Length: 432 bp
ATGGCAACTGGTAAAACTGTGAAAGACGTCTCGCCTCATGACTTCGTCAAGGCTTATGCTTCTCATCTCAAGCGATCTGGCAAGATCGAGCTTCCCACATGGACAGACATTGTGAAGACCGGAAAGTTGAAGGAGCTTGCACCATATGATCCTGATTGGTACTACATCAGAGCTGCATCTATGGCAAGGAAGGTTTACCTGAGGGGAGGACTTGGTGTTGGTGCTTTCCGTAGAATCTATGGTGGAAGCAAGAGGAACGGTAGTCGCCCACCTCACTTTTGCAAAAGCAGTGGTGGTATTGCCCGTCACATCCTCCAACAGCTGGAGACAATGAACATTGTTGAGCTCGACACCAAAGGAGGAAGAAGGATCACTTCCAGTGGCCAAAGGGATTTGGACCAGGTTGCTGGCCGTATTGCAGTTGAACCTTGA

Protein Analysis

143

Amino Acids

15.83

Weight (kDa)

10.09

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S19e PF01090 6 - 140 3.4e-58 Ribosomal protein S19e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 30
AccB7I CCANNNNNTGG 1 cut(s) 322
AclWI GGATC 2 cut(s) 143, 377
AcoI YGGCCR 2 cut(s) 382, 409
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 2 cut(s) 130, 425
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 5 cut(s) 91, 136, 173, 322, 346
AluI AGCT 5 cut(s) 91, 136, 173, 322, 346
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 34, 320
AlwI GGATC 2 cut(s) 143, 377
AoxI GGCC 2 cut(s) 382, 409
ApeKI GCWGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 397
AvaII GGWCC 1 cut(s) 397
AxyI CCTNAGG 1 cut(s) 200
BalI TGGCCA 1 cut(s) 384
BanII GRGCYC 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 396
BciT130I CCWGG 1 cut(s) 401
BcoDI GTCTC 2 cut(s) 34, 320
BisI GCNGC 1 cut(s) 174
BlsI GCNGC 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 397
BmgT120I GGNCC 1 cut(s) 397
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 53
BsaHI GRCGYC 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 2 cut(s) 13, 378
Bse21I CCTNAGG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 401
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 13, 378
BseXI GCAGC 1 cut(s) 160
BshFI GGCC 2 cut(s) 384, 411
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 120
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 2 cut(s) 34, 320
BsmBI CGTCTC 1 cut(s) 34
BsnI GGCC 2 cut(s) 384, 411
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 4 cut(s) 74, 84, 148, 369
BspANI GGCC 2 cut(s) 384, 411
BspCNI CTCAG 1 cut(s) 192
BspHI TCATGA 1 cut(s) 37
BspPI GGATC 2 cut(s) 143, 377
BsrI ACTGG 2 cut(s) 13, 378
BssMI GATC 4 cut(s) 74, 84, 148, 369
BssNI GRCGYC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 19, 260
BstACI GRCGYC 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 138, 409
BstDEI CTNAG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 309
BstKTI GATC 4 cut(s) 77, 87, 151, 372
BstMAI GTCTC 2 cut(s) 34, 320
BstMBI GATC 4 cut(s) 74, 84, 148, 369
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstV1I GCAGC 1 cut(s) 160
BstV2I GAAGAC 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 407
Bsu36I CCTNAGG 1 cut(s) 200
BsuRI GGCC 2 cut(s) 384, 411
BtsCI GGATG 1 cut(s) 309
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 295, 385
Cac8I GCNNGC 2 cut(s) 138, 409
CciI TCATGA 1 cut(s) 37
Cfr13I GGNCC 1 cut(s) 397
CsiI ACCWGGT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 160
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 2 cut(s) 38, 99
CviJI RGCY 8 cut(s) 53, 91, 136, 173, 322, 346, 384, 411
CviKI_1 RGCY 8 cut(s) 53, 91, 136, 173, 322, 346, 384, 411
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 1 cut(s) 200
DpnI GATC 4 cut(s) 76, 86, 150, 371
DpnII GATC 4 cut(s) 74, 84, 148, 369
EaeI YGGCCR 2 cut(s) 382, 409
Ecl136II GAGCTC 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 348
Eco47I GGWCC 1 cut(s) 397
Eco53kI GAGCTC 1 cut(s) 346
Eco81I CCTNAGG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 399
EcoT38I GRGCYC 1 cut(s) 348
Esp3I CGTCTC 1 cut(s) 34
FaeI CATG 2 cut(s) 41, 102
FaiI YATR 7 cut(s) 39, 57, 100, 145, 147, 182, 240
FalI AAGNNNNNCTT 2 cut(s) 358, 390
FatI CATG 2 cut(s) 37, 98
FauNDI CATATG 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 174
FokI GGATG 1 cut(s) 296
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 174
GluI GCNGC 1 cut(s) 174
GsuI CTGGAG 1 cut(s) 344
HaeIII GGCC 2 cut(s) 384, 411
HapII CCGG 1 cut(s) 120
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 2 cut(s) 41, 102
HinfI GANTC 1 cut(s) 234
HpaII CCGG 1 cut(s) 120
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 170
Hpy188III TCNNGA 2 cut(s) 38, 152
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 3 cut(s) 124, 184, 360
HpyCH4III ACNGT 2 cut(s) 19, 260
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 4 cut(s) 140, 176, 282, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 2 cut(s) 41, 102
Kzo9I GATC 4 cut(s) 74, 84, 148, 369
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 9 cut(s) 63, 133, 165, 212, 308, 386, 391, 393, 413
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 1 cut(s) 185
MabI ACCWGGT 1 cut(s) 399
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 305
MalI GATC 4 cut(s) 76, 86, 150, 371
MboI GATC 4 cut(s) 74, 84, 148, 369
MboII GAAGA 2 cut(s) 127, 375
MhlI GDGCHC 1 cut(s) 348
MlsI TGGCCA 1 cut(s) 384
MluNI TGGCCA 1 cut(s) 384
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 7 cut(s) 45, 195, 200, 246, 282, 323, 353
Mox20I TGGCCA 1 cut(s) 384
MscI TGGCCA 1 cut(s) 384
Msp20I TGGCCA 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 1 cut(s) 120
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeI CATATG 1 cut(s) 145
NdeII GATC 4 cut(s) 74, 84, 148, 369
NlaIII CATG 2 cut(s) 41, 102
NmuCI GTSAC 1 cut(s) 305
PagI TCATGA 1 cut(s) 37
PfeI GAWTC 1 cut(s) 234
PflFI GACNNNGTC 1 cut(s) 44
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspPI GGNCC 1 cut(s) 397
PsyI GACNNNGTC 1 cut(s) 44
PvuII CAGCTG 1 cut(s) 322
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacI GAGCTC 1 cut(s) 348
SatI GCNGC 1 cut(s) 174
Sau3AI GATC 4 cut(s) 74, 84, 148, 369
Sau96I GGNCC 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 401
SduI GDGCHC 1 cut(s) 348
SexAI ACCWGGT 1 cut(s) 399
SfaNI GCATC 1 cut(s) 185
SinI GGWCC 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 399
TaaI ACNGT 2 cut(s) 19, 260
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 87, 348
TfiI GAWTC 1 cut(s) 234
TscAI CASTG 2 cut(s) 295, 385
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 347
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 2 cut(s) 295, 385
Tth111I GACNNNGTC 1 cut(s) 44
Van91I CCANNNNNTGG 1 cut(s) 322
VpaK11BI GGWCC 1 cut(s) 397
ZraI GACGTC 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.