Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006218.1

Orthogroup ID

OG0002976

Physical Location & Seq

Genomic Coordinates Forward (+)

142872 .. 144004

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006218.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atggcgacggcgaagaccgtgaaggacgtgtcaccacacgagttcgtgaagcattacgccgctcatctgaagagatccggcaagattgagcttcctcattggactgacattgtcaagactgcaactttcaaggagcttgccccatatgatcctgactggtattacatcagggctgcttccatggcgaggaagatctacctcaggggtgggcttggtgttggtgctttcaagaggatctatggtggaagcaagaggaacggaagtcgtccaccacatttttgtgagagtagcggtgctattgcccgacatattctgcagcagttggctgaagttaagatcgttgaaattgacccaaagggtgggaggagaatcacatcaaacggtcgacgggatcttgaccaagttgctgggaggattgtggttgccctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

143

Amino Acids

15.95

Weight (kDa)

10.09

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02080 AT5G15520 AT5G61170
fragaria_vesca	FvH4_5g14200 FvH4_6g47110 FvH4_6g47110
malus_domestica	MD06G1200400.v1.1 MD09G1064000.v1.1 MD14G1209900.v1.1 MD17G1057300.v1.1
prunus_persica	Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.5G203100_v2.0.a1
pyrus_communis	pycom06g17700 pycom111g05360 pycom14g17340
rosa_chinensis	RchiOBHm_Chr2g0166161 RchiOBHm_Chr7g0182731
rosa_laevigata	RLG00000005105 RLG00000021591
rosa_multiflora	Rmu_sc0003127.1_g000026 Rmu_sc0006218.1_g000031 Rmu_sc0024464.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085150 Rroxscaffold_3G00271030
rosa_rugosa	Rorug02G0520800 Rorug06G0449700
rosa_samantha	Rh2AG586900 Rh2BG598700 Rh2CG569400 Rh2DG608600 Rh7AG053500 Rh7BG053000 Rh7CG054600 Rh7DG052800
rosa_wichuraiana	Rw2G048930 Rw7G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	385
AciI	CCGC	2 cut(s)	60, 291
AclWI	GGATC	4 cut(s)	69, 143, 242, 399
AcuI	CTGAAG	2 cut(s)	89, 348
AfiI	CCNNNNNNNGG	2 cut(s)	186, 359
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	3 cut(s)	130, 229, 344
AjiI	CACGTC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	91, 136
AluI	AGCT	2 cut(s)	91, 136
AlwI	GGATC	4 cut(s)	69, 143, 242, 399
ApeKI	GCWGC	2 cut(s)	173, 316
AsuHPI	GGTGA	1 cut(s)	24
AxyI	CCTNAGG	1 cut(s)	200
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	160, 328
BceAI	ACGGC	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	314
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	3 cut(s)	60, 174, 317
BlsI	GCNGC	3 cut(s)	61, 175, 318
BmgBI	CACGTC	1 cut(s)	28
BpiI	GAAGAC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 359
Bse1I	ACTGG	1 cut(s)	161
Bse21I	CCTNAGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	186, 359
BseMII	CTCAG	1 cut(s)	214
BseNI	ACTGG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	160, 328
BseYI	CCCAGC	1 cut(s)	407
Bsh1285I	CGRYCG	1 cut(s)	385
BsiEI	CGRYCG	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	186, 359
Bsp143I	GATC	6 cut(s)	74, 148, 192, 234, 336, 391
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	2 cut(s)	60, 291
BspCNI	CTCAG	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	318
BspPI	GGATC	4 cut(s)	69, 143, 242, 399
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	6 cut(s)	74, 148, 192, 234, 336, 391
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	19, 383
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	180
BstKTI	GATC	6 cut(s)	77, 151, 195, 237, 339, 394
BstMBI	GATC	6 cut(s)	74, 148, 192, 234, 336, 391
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	314
BstV1I	GCAGC	2 cut(s)	160, 328
BstV2I	GAAGAC	1 cut(s)	20
BstX2I	RGATCY	4 cut(s)	74, 192, 234, 391
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	4 cut(s)	74, 192, 234, 391
Bsu36I	CCTNAGG	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	138
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	5 cut(s)	91, 136, 173, 211, 326
CviKI_1	RGCY	5 cut(s)	91, 136, 173, 211, 326
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	6 cut(s)	76, 150, 194, 236, 338, 393
DpnII	GATC	6 cut(s)	74, 148, 192, 234, 336, 391
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	180
Eco57I	CTGAAG	2 cut(s)	89, 348
Eco81I	CCTNAGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	184
FaiI	YATR	5 cut(s)	145, 147, 182, 240, 309
FatI	CATG	1 cut(s)	180
FauNDI	CATATG	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	60, 174, 317
Fsp4HI	GCNGC	3 cut(s)	60, 174, 317
GluI	GCNGC	3 cut(s)	60, 174, 317
GsaI	CCCAGC	1 cut(s)	411
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	1 cut(s)	184
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HinfI	GANTC	1 cut(s)	369
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	24
Hpy166II	GTNNAC	2 cut(s)	269, 386
Hpy188I	TCNGA	1 cut(s)	69
Hpy188III	TCNNGA	5 cut(s)	46, 115, 152, 229, 395
Hpy8I	GTNNAC	2 cut(s)	269, 386
Hpy99I	CGWCG	2 cut(s)	10, 390
HpyAV	CCTTC	1 cut(s)	16
HpyCH4III	ACNGT	2 cut(s)	19, 383
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	122, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	184
Kzo9I	GATC	6 cut(s)	74, 148, 192, 234, 336, 391
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	6 cut(s)	91, 142, 154, 165, 187, 393
Lsp1109I	GCAGC	2 cut(s)	160, 328
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	30
MalI	GATC	6 cut(s)	76, 150, 194, 236, 338, 393
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	6 cut(s)	74, 148, 192, 234, 336, 391
MboII	GAAGA	3 cut(s)	25, 82, 202
MflI	RGATCY	4 cut(s)	74, 192, 234, 391
MluCI	AATT	1 cut(s)	345
MnlI	CCTC	7 cut(s)	105, 180, 209, 225, 246, 357, 405
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	6 cut(s)	74, 148, 192, 234, 336, 391
NlaIII	CATG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	369
PflFI	GACNNNGTC	1 cut(s)	110
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	61, 175, 318
PspFI	CCCAGC	1 cut(s)	407
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	4 cut(s)	74, 192, 234, 391
PsyI	GACNNNGTC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	279
SalI	GTCGAC	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	3 cut(s)	60, 174, 317
Sau3AI	GATC	6 cut(s)	74, 148, 192, 234, 336, 391
SetI	ASST	4 cut(s)	30, 93, 138, 201
SfcI	CTRYAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	2 cut(s)	60, 291
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	19, 383
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	385
TasI	AATT	1 cut(s)	345
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	369
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	30
TseI	GCWGC	2 cut(s)	173, 316
Tsp45I	GTSAC	1 cut(s)	30
TspGWI	ACGGA	1 cut(s)	273
Tth111I	GACNNNGTC	1 cut(s)	110
Van91I	CCANNNNNTGG	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.