Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002976

Physical Location & Seq

Genomic Coordinates Forward (+)

24611032 .. 24612564

Gene Structure 1533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGACAGGTAAAACAGTGAAGGATGTCTCTCCACACGAGTTCGTCAAGGCTTACGCTGCCCATCTCAAGCGTTCCGGCAAGATTGAGCTGCCTCTGTGGACAGACATCGTCAAGACTGGTAAACTTAAGGAGCTTGCTCCATATGACCCTGACTGGTACTACATCAGAGCTGCTTCCATGGCTAGGAAGGTTTACCTGAGGGGTGGTCTTGGAGTTGGTGCCTTCCGTAGGATCTATGGAGGAAGCAAGAGGAACGGAAGCCGTCCTCCTCATTTCTGCAAGAGCAGTGGTGGTGTTGCTCGTCACATTCTTCAGCAACTCCAGACCATGAACATTGTTGACCTCGACACCAAGGGTGGAAGGAAGATCACATCAAGTGGTCAGAGAGATCTCGACCAAGTCGCTGGAAGGATCGCAGCTGCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

143

Amino Acids

15.7

Weight (kDa)

10.22

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19e	PF01090	6 - 140	7e-57	Ribosomal protein S19e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02080 AT5G15520 AT5G61170
fragaria_vesca	FvH4_5g14200 FvH4_6g47110 FvH4_6g47110
malus_domestica	MD06G1200400.v1.1 MD09G1064000.v1.1 MD14G1209900.v1.1 MD17G1057300.v1.1
prunus_persica	Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.5G203100_v2.0.a1
pyrus_communis	pycom06g17700 pycom111g05360 pycom14g17340
rosa_chinensis	RchiOBHm_Chr2g0166161 RchiOBHm_Chr7g0182731
rosa_laevigata	RLG00000005105 RLG00000021591
rosa_multiflora	Rmu_sc0003127.1_g000026 Rmu_sc0006218.1_g000031 Rmu_sc0024464.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085150 Rroxscaffold_3G00271030
rosa_rugosa	Rorug02G0520800 Rorug06G0449700
rosa_samantha	Rh2AG586900 Rh2BG598700 Rh2CG569400 Rh2DG608600 Rh7AG053500 Rh7BG053000 Rh7CG054600 Rh7DG052800
rosa_wichuraiana	Rw2G048930 Rw7G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AclWI	GGATC	2 cut(s)	242, 422
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	186, 231
AflII	CTTAAG	1 cut(s)	128
AluBI	AGCT	4 cut(s)	91, 136, 173, 422
AluI	AGCT	4 cut(s)	91, 136, 173, 422
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	2 cut(s)	242, 422
AlwNI	CAGNNNCTG	1 cut(s)	425
ApeKI	GCWGC	5 cut(s)	59, 91, 173, 419, 422
AxyI	CCTNAGG	1 cut(s)	200
BanI	GGYRCC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	38
BbvI	GCAGC	4 cut(s)	46, 78, 160, 409
BccI	CCATC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	5 cut(s)	60, 92, 174, 420, 423
BlsI	GCNGC	5 cut(s)	61, 93, 175, 421, 424
BmiI	GGNNCC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	53
BsaJI	CCNNGG	2 cut(s)	180, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 231
Bse1I	ACTGG	2 cut(s)	124, 161
Bse21I	CCTNAGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	180, 354
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	186, 231
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	124, 161
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	4 cut(s)	46, 78, 160, 409
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	186, 231
BsmAI	GTCTC	1 cut(s)	34
Bsp143I	GATC	4 cut(s)	234, 369, 391, 414
Bsp19I	CCATGG	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	242, 422
BspT107I	GGYRCC	1 cut(s)	221
BspTI	CTTAAG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	124, 161
BssECI	CCNNGG	2 cut(s)	180, 354
BssMI	GATC	4 cut(s)	234, 369, 391, 414
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	180, 354
Bst2BI	CACGAG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	19
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	180
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	4 cut(s)	237, 372, 394, 417
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	4 cut(s)	234, 369, 391, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 182
BstV1I	GCAGC	4 cut(s)	46, 78, 160, 409
BstX2I	RGATCY	2 cut(s)	234, 391
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	2 cut(s)	234, 391
Bsu36I	CCTNAGG	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	24, 295
Cac8I	GCNNGC	1 cut(s)	138
CaiI	CAGNNNCTG	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	160
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	2 cut(s)	181, 331
CviJI	RGCY	7 cut(s)	53, 91, 136, 173, 185, 264, 422
CviKI_1	RGCY	7 cut(s)	53, 91, 136, 173, 185, 264, 422
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	4 cut(s)	236, 371, 393, 416
DpnII	GATC	4 cut(s)	234, 369, 391, 414
Eco130I	CCWWGG	2 cut(s)	180, 354
Eco57I	CTGAAG	1 cut(s)	299
Eco81I	CCTNAGG	1 cut(s)	200
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	180, 354
ErhI	CCWWGG	2 cut(s)	180, 354
FaeI	CATG	2 cut(s)	184, 334
FaiI	YATR	5 cut(s)	145, 147, 182, 240, 332
FatI	CATG	2 cut(s)	180, 330
FauNDI	CATATG	1 cut(s)	145
Fnu4HI	GCNGC	5 cut(s)	60, 92, 174, 420, 423
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	5 cut(s)	60, 92, 174, 420, 423
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	5 cut(s)	60, 92, 174, 420, 423
GsuI	CTGGAG	1 cut(s)	308
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	2 cut(s)	184, 334
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	4 cut(s)	102, 125, 196, 343
Hpy188I	TCNGA	2 cut(s)	170, 387
Hpy188III	TCNNGA	3 cut(s)	115, 325, 395
Hpy8I	GTNNAC	4 cut(s)	102, 125, 196, 343
HpyAV	CCTTC	5 cut(s)	16, 184, 235, 357, 405
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 182
HpyF3I	CTNAG	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	184, 334
Kzo9I	GATC	4 cut(s)	234, 369, 391, 414
LmnI	GCTCC	2 cut(s)	133, 145
LpnPI	CCDG	7 cut(s)	91, 105, 142, 165, 212, 338, 393
Lsp1109I	GCAGC	4 cut(s)	46, 78, 160, 409
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	4 cut(s)	236, 371, 393, 416
MboI	GATC	4 cut(s)	234, 369, 391, 414
MboII	GAAGA	2 cut(s)	305, 379
MflI	RGATCY	2 cut(s)	234, 391
MnlI	CCTC	7 cut(s)	105, 195, 236, 246, 279, 282, 356
MseI	TTAA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	422
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	59, 182
NcoI	CCATGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	4 cut(s)	234, 369, 391, 414
NlaIII	CATG	2 cut(s)	184, 334
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	305
PflFI	GACNNNGTC	2 cut(s)	110, 401
PkrI	GCNGC	5 cut(s)	61, 93, 175, 421, 424
PspN4I	GGNNCC	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	2 cut(s)	234, 391
PsyI	GACNNNGTC	2 cut(s)	110, 401
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	5 cut(s)	60, 92, 174, 420, 423
Sau3AI	GATC	4 cut(s)	234, 369, 391, 414
SetI	ASST	8 cut(s)	13, 93, 138, 175, 195, 201, 348, 424
SmlI	CTYRAG	2 cut(s)	68, 128
SmoI	CTYRAG	2 cut(s)	68, 128
SspMI	CTAG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	180, 354
TaaI	ACNGT	1 cut(s)	19
TaqI	TCGA	2 cut(s)	348, 396
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	2 cut(s)	24, 295
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	5 cut(s)	59, 91, 173, 419, 422
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	2 cut(s)	218, 273
TspRI	CASTG	2 cut(s)	24, 295
Tth111I	GACNNNGTC	2 cut(s)	110, 401
Vha464I	CTTAAG	1 cut(s)	128
XagI	CCTNNNNNAGG	1 cut(s)	229
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.