Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002976

Physical Location & Seq

Genomic Coordinates Reverse (-)

3868087 .. 3870156

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGACGGCGAACAAAGTGAAAGACGTTTCCCCTCACGAGTTTGTCAAGGCCTACGCCGCTCATCTTAAACGATCCGGCAAGATTGAGCTTCCTGAGTGGACGGATATTGTGAAGACTGCTACATTTAAGGAGCTGGCTCCTTATGACCCTGATTGGTATTATATCAGAGCTGCATCTATGGCAAGGAAAATCTACTTGAGGGGTGGTCTTGGTGTTGGTGCCTTCCGTAGGATCTATGGAGGAAGCAAGAGGAACGGCAGCCGCCCACCGCACTTCTGTAAGAGCAGTGGCGGTATTGCTCGTCACATCCTTCAGCAATTGGAGAAGCTGAAGATTGTTGACATTGACCCCAAAGGGGGAAGGAAAATCACACCCAGTGGGCAGCGGGATTTGGACCAAGTTGCTGGACGGATCGTTGTTGCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

143

Amino Acids

15.89

Weight (kDa)

10.08

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19e	PF01090	6 - 140	1.4e-58	Ribosomal protein S19e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02080 AT5G15520 AT5G61170
fragaria_vesca	FvH4_5g14200 FvH4_6g47110 FvH4_6g47110
malus_domestica	MD06G1200400.v1.1 MD09G1064000.v1.1 MD14G1209900.v1.1 MD17G1057300.v1.1
prunus_persica	Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.5G203100_v2.0.a1
pyrus_communis	pycom06g17700 pycom111g05360 pycom14g17340
rosa_chinensis	RchiOBHm_Chr2g0166161 RchiOBHm_Chr7g0182731
rosa_laevigata	RLG00000005105 RLG00000021591
rosa_multiflora	Rmu_sc0003127.1_g000026 Rmu_sc0006218.1_g000031 Rmu_sc0024464.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085150 Rroxscaffold_3G00271030
rosa_rugosa	Rorug02G0520800 Rorug06G0449700
rosa_samantha	Rh2AG586900 Rh2BG598700 Rh2CG569400 Rh2DG608600 Rh7AG053500 Rh7BG053000 Rh7CG054600 Rh7DG052800
rosa_wichuraiana	Rw2G048930 Rw7G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	5 cut(s)	60, 265, 272, 294, 388
AclWI	GGATC	3 cut(s)	69, 242, 422
AcuI	CTGAAG	2 cut(s)	299, 353
AdeI	CACNNNGTG	1 cut(s)	380
AfiI	CCNNNNNNNGG	3 cut(s)	231, 358, 359
AluBI	AGCT	4 cut(s)	91, 136, 173, 331
AluI	AGCT	4 cut(s)	91, 136, 173, 331
AlwI	GGATC	3 cut(s)	69, 242, 422
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	3 cut(s)	173, 261, 385
AspS9I	GGNCC	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	160, 273, 397
BceAI	ACGGC	2 cut(s)	24, 274
BisI	GCNGC	5 cut(s)	60, 174, 262, 265, 386
BlsI	GCNGC	5 cut(s)	61, 175, 263, 266, 387
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	141, 223
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	185
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 358, 359
Bse1I	ACTGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	309
BseLI	CCNNNNNNNGG	3 cut(s)	231, 358, 359
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	160, 273, 397
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	3 cut(s)	231, 358, 359
BsnI	GGCC	1 cut(s)	53
Bsp143I	GATC	3 cut(s)	74, 234, 414
BspACI	CCGC	5 cut(s)	60, 265, 272, 294, 388
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	141, 223
BspPI	GGATC	3 cut(s)	69, 242, 422
BspT107I	GGYRCC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	378
BssMI	GATC	3 cut(s)	74, 234, 414
BssSI	CACGAG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	96
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	309
BstKTI	GATC	3 cut(s)	77, 237, 417
BstMBI	GATC	3 cut(s)	74, 234, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 182
BstV1I	GCAGC	3 cut(s)	160, 273, 397
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	234
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	295, 385
Cac8I	GCNNGC	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	397
CviJI	RGCY	7 cut(s)	53, 91, 136, 140, 173, 264, 331
CviKI_1	RGCY	7 cut(s)	53, 91, 136, 140, 173, 264, 331
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	76, 236, 416
DpnII	GATC	3 cut(s)	74, 234, 414
DraIII	CACNNNGTG	1 cut(s)	380
Eco147I	AGGCCT	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	299, 353
EcoNI	CCTNNNNNAGG	1 cut(s)	229
FaiI	YATR	4 cut(s)	147, 165, 182, 240
FauI	CCCGC	1 cut(s)	381
Fnu4HI	GCNGC	5 cut(s)	60, 174, 262, 265, 386
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	5 cut(s)	60, 174, 262, 265, 386
GluI	GCNGC	5 cut(s)	60, 174, 262, 265, 386
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	102, 343
Hpy188I	TCNGA	2 cut(s)	170, 431
Hpy188III	TCNNGA	2 cut(s)	38, 95
Hpy8I	GTNNAC	2 cut(s)	102, 343
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	235, 323, 357
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	176, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 182
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	74, 234, 414
LmnI	GCTCC	2 cut(s)	133, 145
LpnPI	CCDG	6 cut(s)	91, 108, 122, 165, 391, 393
Lsp1109I	GCAGC	3 cut(s)	160, 273, 397
LweI	GCATC	1 cut(s)	185
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	3 cut(s)	76, 236, 416
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	3 cut(s)	74, 234, 414
MboII	GAAGA	2 cut(s)	127, 346
MfeI	CAATTG	1 cut(s)	320
MflI	RGATCY	1 cut(s)	234
MluCI	AATT	1 cut(s)	320
MnlI	CCTC	4 cut(s)	45, 195, 236, 246
MseI	TTAA	2 cut(s)	69, 129
MspA1I	CMGCKG	1 cut(s)	388
MspI	CCGG	1 cut(s)	78
MunI	CAATTG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	59, 182
NdeII	GATC	3 cut(s)	74, 234, 414
NlaIV	GGNNCC	2 cut(s)	141, 223
NmuCI	GTSAC	1 cut(s)	305
PceI	AGGCCT	1 cut(s)	53
PkrI	GCNGC	5 cut(s)	61, 175, 263, 266, 387
PspN4I	GGNNCC	2 cut(s)	141, 223
PspPI	GGNCC	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	234
SaqAI	TTAA	2 cut(s)	69, 129
SatI	GCNGC	5 cut(s)	60, 174, 262, 265, 386
Sau3AI	GATC	3 cut(s)	74, 234, 414
Sau96I	GGNCC	1 cut(s)	397
SetI	ASST	5 cut(s)	30, 93, 138, 175, 333
SfaNI	GCATC	1 cut(s)	185
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	1 cut(s)	320
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	5 cut(s)	60, 265, 272, 294, 388
StuI	AGGCCT	1 cut(s)	53
TaiI	ACGT	1 cut(s)	30
TasI	AATT	1 cut(s)	320
TauI	GCSGC	2 cut(s)	62, 267
Tru1I	TTAA	2 cut(s)	69, 129
Tru9I	TTAA	2 cut(s)	69, 129
TscAI	CASTG	2 cut(s)	295, 385
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	3 cut(s)	173, 261, 385
Tsp45I	GTSAC	1 cut(s)	305
TspGWI	ACGGA	3 cut(s)	119, 218, 427
TspRI	CASTG	2 cut(s)	295, 385
VpaK11BI	GGWCC	1 cut(s)	397
XagI	CCTNNNNNAGG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.