Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002976

Physical Location & Seq

Genomic Coordinates Reverse (-)

65250595 .. 65259651

Gene Structure 9057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0520800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5226 bp

ATGACGTCGTCGGCGGAGAGCAGCGACGGAGACCACGACGTCGAGCTGAACGTGATCGCTCGAGAGCCGTCGTCTTCAGCATCGGAGGCTGATGGTGGCCCCGCCGTCACGGAGGAGATGTCTCCTCTGTTAACGCAGGCAGAGAAGCCCAAAATCAACATCTTCACTCTCTCCTATCCCCGGAGAAAGCCTGGGGAGGAGGTAATCAGATCATTTGAACCAGAGATATCGGCGGCATCTCAGTTTATTTTGTGGGTATGGAGTGGATCTAGATACTCGGGTCTAATGTGTATGGCTATCTCTTCTACCATCTATTTTACCATGGAAGTTGTCACTGATGTTTTTTCAGTTCAGCCCATTCCTTTGTTTGAGGCTGCATTTACAAGATGTACAGTTATATTGGTATTGTCGTATATGTGGTTGAGAAAGGTCGGACAGCCATTATCTGGGCTGGGAAACGTAAAAAATCTTTTGATTTCAAGAGCCTTTATGGGATATCTCTCGTTGATGAGTTTCATCTTTTGCATTCAAAGGTTATCTTTATCTCAGGCTATTGTACTTAGCTTAACAACTCCAATTATAGCTTCAGTTGTGGCAAGATTCATTCTACATGAGACTTATAAAGTTGCAGAAGTTGGAGGTCTTGCGTGCAGTTTCTTTGGTGTGCTTTTCATTTTTCAACAATTGCTTACTACACAAGATCAACATGATGAAGGAAAGAATACAAGTGTCAGTGGAAGCGGCCATATATATGCAATCTTAGCCGGTTCACTTTCATCAATAACCGGTGGAATCAGCTACTGTCTTATAAGGGCCGGAGCAAACGCATGTGACCAGCCACTGTTGACAGTCTTTTCATTTAGTTTGCTGGCTAGTCCTGCTGCAGGAATTTGTCTTTTTTCCTTTGAGAAGTTTGTATTCCCAAGTTTTTACTCATTATCACTTATGCTCGTACTCGGCGTTCTGGCCTTTTTTGCGGAGGTATTTTTAGCACGTGGGCTGCAGCTTGAGAAAACTAGCAAAGTTGCAAATGTTCTATACATGGAGGCTGCACTGTCACAACTTTGGGTCATTGGTTCTGCAAGGATTGCACCAACTTTTGGTCGAATTTTCGCTAATGCTCCTACAAGAACTGCTCTTCGTAGTTTGATTAGAAAGCACTCCCCTGATTTCCTTTGTTTATCGGAACCAATGACATCTTTGACACGTATTCCTGATTCTTTTTGGAGATCCATTGGTATGCAATTGGTCGGTGTCAATGATAGAGGTCAGTTATTTCCTAATATTTGGGTTTTTCATTCAACAAACATCCCCTCTCCTACTATGATATCTTCTTCTAGTCAACATATGTTTGTGCAGTTTTCTGTTGATGGTATTGCTCATGGTCTGATATTTGTCTATGCGGCAACAACTAGTGTGGCACGTCGTCCTTTATGGTCTGCAATTGAGCAAATAAAGACAAGCTTCTCGGGTCCTTTGCTATTAGTTGGTGATTTCAATGCGATTTTAGGAGCCCATGAAAAGACGGGTGGTAGACTACCTACTCGTGTTTCTTGTGATGACTTTCAGCATATGGTGGATGTGTGTCATTTGACACAAATTGATCTTAAAGGGTCACCGTTTACATGGACAAATGGTCGAGGAGTTGGCTCACATATTGAAATGTTGTTGGACAGGTGCTTTTGTTCTATTCCATGGTTAGACTATTGGCCGATGACTAGTTGTTCCACTTTGGTTCGGCACTCTTCTGATCATAATCCTCTCTTGATTTCATTCACCAAATACATTGCACAAGGTCCAATTCCATTCCGTTTTCAGAAGCTTTGGTTGGGGCACTCAGATTTTCTAAAAATTGTTCAAGTAGCATGGCAATCTTTTGTGGTATGTGGTTGTCCTATGTTTATTCTACAAAGGAAGCTTAAACTTTTAAAACCTATTCTGAAGGAGTGGAATGTTAATGTCTTCGGTAATGTTCATATTGCTGTGGATAGTGCACGCGCTGCTCTTGAAAAAATTCAACTAGCCATATCTCTTGATGGGTTTACTGAAGTGCGTCGTGTTGAGGAGCTTTTATCCCAGGATGCTTTATCACATGCTTTATTGGTTCAGGAAAAATTCTGGGCGGAGAAGGCAAGGGTGAGATGGGCTAGGGAAGGTGACAGAAATACTGGCTATTTCCATACTTTGGCAAAAATTCGGAGAGCACGCTCTTCTATCACTTCTCTTCGCATTGGGAATGACTTGGTGGATGATGTTAATATTTTGCGTGATCATGTTGTTCAGCATTTTACAAGTGCCTTTTCAGATGATGGAAATATTGCTGATACAGGTTTGGTTGAAAATATTATTCCTTCAATGGTTTCAGATTCAGAAAATGGCTATTTACTTGCTATTCCTTCTGCTGAAGATGTCAAAAATGTTGTATTTTCCATGAATGCTGATAGTGCCCCAGGTCCGGATGGTTATTCTGGCCACTTTTTTCAGGCTTGTTGGGATGTAGTTGGGTTGGATGTGGTCCGTGCTGTTAGATCTTTCTTTCAGTCAGGTTATATACTGCCTAATCTAAATTCCAGCTTTGTGGCGCTTATTCCAAAGGTTCAAGAAGCTGATGTTATCACTCAATTTCGGCCCATTGCTATGGCTAATTTTTCTTTTAAAATTATTACTCGCCTACTGGCAGACCGTCTTGCTCCTATTGCTTCCAGGATTATATTGCCGAATCAATTTGCTTTTTTGAAAGGAAGACAAATCTCTGATTGCATTTTTCTGACTTCTGAGTGTGTTAACTTGTTGGATAATAAATGTCGTGGTGGGAATGTTGCCATTAAGTTTGATGTAGCAAAGGCCTTTGATACTCTGAATTGGGACTTCCTTCGAAGGGTTCTTAATGCTTTTGGTTTTCATGCAACTTTTGTGGAATGGATTAGTTCTATATTGGCTTCAGCTCGGCTCTCTATCTTATTTAATGGCTCTCCAGTGGGATTTTTTAGTTGTAGCCGTGGAGTTCGACAAGGTGATCCACTGTCTCCTCTTCTTTTTTGCCTTGCTGAAGAGGTTCTTAGCCGTGGTATCCTGCGTTTGGTTGATATGGGGCATGTCCAAGCTATATCCTCTCCTCGTGCTGTGAAAGTCCCTTCTCATGTTTTATTTGCTGATGATATAATGGTTTTTTGTAAGGGAGATAAAAGAAGCCTACTAAATCTTATGGCTTTCTTTGAGGAGTACGGACTCAACTCGGGTCAATTGGTGAACAAAACCAAGTCTCATGTTTATTTGGGGAAGTCAGCTCTTCATCGTCGTACTCTAATATATTCTTGGTTGGGTGTTTCAGTGGGTAAATTGCCTTTCATGTACCTTGGTGTGCCAATTTTTGTTGGCCGTCCAAAGCGAATTTACTTCCAAGTCTTGGCTGATCGAATTCGTAATGTTATGTCTAATTGGAGAGGGCATTCTCTTTCCATGGCAGGACGGGTAACTCTGGTCAATTCTGTGGTGGTTAGTATGCTTTCCCATAGTTTCACAATTTATGCTTGGCCAAGGACTGTATTGCAACAAGTTCGAAATTGGATGAGGAATTTTATTTGGACCGGCAATGTGTCTTCTAGAGCCTATTATCCAGTCTCTTGGAAAAAGTGTTGTGCTCCATTGAAGGAGGGTGGTCTTGGAGTTCGTAATATTATGGCTCTTAATAAGGCTTTCCTCCTAAAAAAAATTTGGGATTTCTTAACTAAGTCTACACCAGCGGCTGCTTTTTTTTCTGCTCGGTTTCTTCAACGTTCAGGTCAGCCATGTTCTTACTATAAAAAATCATCTATTTGGCCTGGCATGCGACCCTTGTTTATGGATATTTTCTACAACTCTAAATGGATAGTGGGCAATGGTCGATCAATTGATTTTTGGCATGGTAATTGGCTTAATGGTTCAGTTGTTGATAGATTGGGTATTGTGCATCAGCTTGGCAAATTATTATGTGCCAAAGTTTCTGATTTCATCAGAGATGGCTCTTGGTATTGCTCTACAAATTTGATTGCTGATCTTTCTGCACTTTGGTCAGAAATTTCAGCTGTTAGACTTCCTTATTCAGACATGGAGGATAAGCTGGTGTGGTTGGATTCTTCTGATGGGAGTTTATCTTTATCTATAGCCTATGAGTTCAAGAGGAGTAAACAGGCAATTGTTCTTTGGGATAGATGGGTTTGGCGTCAATGCTTTCGTCCTCGAAACTCTGTTACTTTATGGAAATTTCTTCATGGTAAGCTTTTAACAGATGATCTCTTACTTCAGCGAGGCTTTTCTTTTGCTTCTATGTGCTCTCTCTGTCATGCATCTGCTGAGACGGCCCACCACCTTTTTTTTGAGTGCTCTTTCTCTATGAAGGTATGGTCTGCAGTTTTATCTTGGTTTAAAGTCAGTATTCATTTCCTGGATATATATGATTTCTTCTCTTACCCACTGCAACATGGTTTTGGTACTCAATTGCAATTGCTATGGTGGGGAATGATGGGAGCTGGCTTCTACTCTCTTTGGGAGGCTAGAAATTCTATCCGTTTTGATGAGCGTCGCTTAACTACTGATTATTTGATTCGCTCTATCAAGCATCAAATTCGAGAGGTTGATTCTTGGGGTTTAGGAATTATGCGTAACTCAGTAGATGAGCTTTGTATTTTCAGTGCTCTTAGAATCAGCGGTAGAGCCTCAAGATCACATCAAATTCGTGAGGTAAATTGGCATGCTCCTTGTGCTTTTCAATTAAAGGTTAATACAGATGGTGCTGCTCGTGGGACGCCAGGACTCACGGGCTATGGAGGTATTTTTCGTGATCACTTGGGTAATTGTATGGGTTGTTTTGCTGGTTCCTTGGGTATTGCTACTGCCCTAGAAGCAGAGCTTCAAGCCATTATTCATGCAGTATCAATAGCATCAGGAAAAGGATGGACTTCTCTCTGGATTGAGTGTGATTCAGCGGTAGCAATTCACTTTCTTGCCAATAAAAATTACTCAGTCCCTTGGCGTCTAAGTGTTGATTGGGTCAATTGTTGTATCATTCTCTCCTCTATGCAGATTCAGTTTTCACATATTTATCGAGAAGGGAATCAAGTGGCTGATTGCTTAGCTAACTATGGGGTGGATCATGAGGGGCATTATTGGTGGGACTCTTGCCCTCCTTGTGCATCAGCTGCCTTTGTTCACAATCTGCAAGGGTTACCGAATTTCCGTATTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

1741

Amino Acids

194.82

Weight (kDa)

8.91

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	94 - 226	5.5e-09	EamA-like transporter family
Exo_endo_phos	PF03372	373 - 585	6.4e-06	Endonuclease/Exonuclease/phosphatase family
RVT_1	PF00078	864 - 1123	1.6e-31	Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT	PF13966	1380 - 1461	4.8e-17	zinc-binding in reverse transcriptase
RVT_3	PF13456	1587 - 1707	1.9e-22	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02080 AT5G15520 AT5G61170
fragaria_vesca	FvH4_5g14200 FvH4_6g47110 FvH4_6g47110
malus_domestica	MD06G1200400.v1.1 MD09G1064000.v1.1 MD14G1209900.v1.1 MD17G1057300.v1.1
prunus_persica	Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.5G203100_v2.0.a1
pyrus_communis	pycom06g17700 pycom111g05360 pycom14g17340
rosa_chinensis	RchiOBHm_Chr2g0166161 RchiOBHm_Chr7g0182731
rosa_laevigata	RLG00000005105 RLG00000021591
rosa_multiflora	Rmu_sc0003127.1_g000026 Rmu_sc0006218.1_g000031 Rmu_sc0024464.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085150 Rroxscaffold_3G00271030
rosa_rugosa	Rorug02G0520800 Rorug06G0449700
rosa_samantha	Rh2AG586900 Rh2BG598700 Rh2CG569400 Rh2DG608600 Rh7AG053500 Rh7BG053000 Rh7CG054600 Rh7DG052800
rosa_wichuraiana	Rw2G048930 Rw7G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	621, 809
AasI	GACNNNNNNGTC	1 cut(s)	38
AatII	GACGTC	2 cut(s)	8, 42
AccB7I	CCANNNNNTGG	4 cut(s)	446, 1100, 2185, 3406
AccI	GTMKAC	2 cut(s)	1534, 3734
AccII	CGCG	1 cut(s)	1998
AccIII	TCCGGA	1 cut(s)	2455
AclI	AACGTT	1 cut(s)	3775
AclWI	GGATC	4 cut(s)	274, 1224, 3011, 5136
AcoI	YGGCCR	5 cut(s)	742, 1709, 2470, 3376, 3533
AcuI	CTGAAG	8 cut(s)	60, 570, 1961, 2067, 2424, 2925, 3069, 4265
AcvI	CACGTG	1 cut(s)	995
AcyI	GRCGYC	5 cut(s)	5, 39, 4201, 4784, 5011
AfaI	GTAC	7 cut(s)	391, 558, 954, 3224, 3301, 3353, 4471
AfiI	CCNNNNNNNGG	9 cut(s)	180, 446, 884, 1100, 2185, 2455, 2878, 3079, 3406
AflIII	ACRYGT	1 cut(s)	1205
AgeI	ACCGGT	1 cut(s)	785
AhdI	GACNNNNNGTC	1 cut(s)	1635
AhlI	ACTAGT	2 cut(s)	1412, 1718
AjiI	CACGTC	1 cut(s)	1424
AjnI	CCWGG	7 cut(s)	190, 2076, 2449, 2702, 3820, 4422, 4786
AjuI	GAANNNNNNNTTGG	4 cut(s)	568, 600, 1811, 1843
Alw21I	GWGCWC	6 cut(s)	1996, 2206, 3643, 4313, 4364, 4675
Alw26I	GTCTC	7 cut(s)	24, 126, 608, 3030, 3267, 3625, 4328
Alw44I	GTGCAC	1 cut(s)	1992
AlwI	GGATC	4 cut(s)	274, 1224, 3011, 5136
AlwNI	CAGNNNCTG	3 cut(s)	801, 841, 3746
Ama87I	CYCGRG	4 cut(s)	60, 277, 1468, 3235
Aor13HI	TCCGGA	1 cut(s)	2455
ApaLI	GTGCAC	1 cut(s)	1992
AsiGI	ACCGGT	1 cut(s)	785
Asp700I	GAANNNNTTC	2 cut(s)	2013, 3054
AspLEI	GCGC	2 cut(s)	2000, 2584
AspS9I	GGNCC	9 cut(s)	98, 813, 1472, 1796, 2453, 2515, 2628, 3585, 4339
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	7 cut(s)	1502, 1608, 1768, 2149, 2168, 3026, 3259
AsuII	TTCGAA	2 cut(s)	2875, 3559
AvaI	CYCGRG	4 cut(s)	60, 277, 1468, 3235
AvaII	GGWCC	5 cut(s)	1472, 1796, 2453, 2515, 3585
BaeGI	GKGCMC	3 cut(s)	1836, 1996, 2449
BaeI	ACNNNNGTAYC	2 cut(s)	265, 298
BalI	TGGCCA	2 cut(s)	2472, 3535
BanII	GRGCYC	1 cut(s)	1516
BauI	CACGAG	3 cut(s)	1545, 3117, 4776
BbrPI	CACGTG	1 cut(s)	995
BbsI	GAAGAC	4 cut(s)	66, 1954, 2749, 3591
Bbv12I	GWGCWC	6 cut(s)	1996, 2206, 3643, 4313, 4364, 4675
BceAI	ACGGC	6 cut(s)	52, 89, 2982, 3048, 3363, 4353
BcgI	CGANNNNNNTGC	4 cut(s)	3539, 3573, 4586, 4620
BciT130I	CCWGG	7 cut(s)	192, 2078, 2451, 2704, 3822, 4424, 4788
BciVI	GTATCC	1 cut(s)	3080
BclI	TGATCA	3 cut(s)	1750, 2269, 4819
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	7 cut(s)	24, 126, 608, 3030, 3267, 3625, 4328
BcuI	ACTAGT	2 cut(s)	1412, 1718
BfmI	CTRYAG	4 cut(s)	882, 1001, 4140, 4386
BfoI	RGCGCY	1 cut(s)	2585
BfuI	GTATCC	1 cut(s)	3080
BglII	AGATCT	1 cut(s)	2528
BlpI	GCTNAGC	1 cut(s)	5110
Bme1390I	CCNGG	8 cut(s)	181, 192, 2078, 2451, 2704, 3822, 4424, 4788
Bme18I	GGWCC	5 cut(s)	1472, 1796, 2453, 2515, 3585
BmeRI	GACNNNNNGTC	1 cut(s)	1635
BmeT110I	CYCGRG	4 cut(s)	60, 277, 1468, 3235
BmgBI	CACGTC	1 cut(s)	1424
BmgT120I	GGNCC	9 cut(s)	98, 813, 1472, 1796, 2453, 2515, 2628, 3585, 4339
BmiI	GGNNCC	5 cut(s)	100, 1188, 1473, 1513, 4855
BmrFI	CCNGG	8 cut(s)	181, 192, 2078, 2451, 2704, 3822, 4424, 4788
BmsI	GCATC	8 cut(s)	89, 245, 2071, 3958, 4334, 4606, 4928, 5180
BpiI	GAAGAC	4 cut(s)	66, 1954, 2749, 3591
BpmI	CTGGAG	1 cut(s)	2958
Bpu1102I	GCTNAGC	1 cut(s)	5110
Bpu14I	TTCGAA	2 cut(s)	2875, 3559
BpuEI	CTTGAG	2 cut(s)	1028, 4681
BpuMI	CCSGG	1 cut(s)	181
BsaAI	YACGTR	2 cut(s)	995, 1208
BsaBI	GATNNNNATC	1 cut(s)	1755
BsaHI	GRCGYC	5 cut(s)	5, 39, 4201, 4784, 5011
BsaI	GGTCTC	1 cut(s)	24
BsaWI	WCCGGW	2 cut(s)	785, 2455
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	9 cut(s)	180, 446, 884, 1100, 2185, 2455, 2878, 3079, 3406
Bse118I	RCCGGY	3 cut(s)	764, 785, 3587
Bse1I	ACTGG	4 cut(s)	2173, 2679, 2975, 3617
Bse3DI	GCAATG	4 cut(s)	1785, 2631, 3598, 3883
Bse8I	GATNNNNATC	1 cut(s)	1755
BseAI	TCCGGA	1 cut(s)	2455
BseBI	CCWGG	7 cut(s)	192, 2078, 2451, 2704, 3822, 4424, 4788
BseGI	GGATG	9 cut(s)	1308, 1585, 2086, 2254, 2464, 2500, 2515, 3573, 4937
BseJI	GATNNNNATC	1 cut(s)	1755
BseLI	CCNNNNNNNGG	9 cut(s)	180, 446, 884, 1100, 2185, 2455, 2878, 3079, 3406
BseMI	GCAATG	4 cut(s)	1785, 2631, 3598, 3883
BseMII	CTCAG	7 cut(s)	254, 560, 1851, 2766, 4323, 4659, 5013
BseNI	ACTGG	4 cut(s)	2173, 2679, 2975, 3617
BseSI	GKGCMC	3 cut(s)	1836, 1996, 2449
BseYI	CCCAGC	1 cut(s)	451
BsgI	GTGCAG	4 cut(s)	670, 1035, 1376, 4026
Bsh1236I	CGCG	1 cut(s)	1998
BshTI	ACCGGT	1 cut(s)	785
BsiHKAI	GWGCWC	6 cut(s)	1996, 2206, 3643, 4313, 4364, 4675
BsiHKCI	CYCGRG	4 cut(s)	60, 277, 1468, 3235
BsiSI	CCGG	6 cut(s)	181, 765, 786, 816, 2456, 3588
BslFI	GGGAC	5 cut(s)	2879, 3116, 4795, 4988, 5165
BslI	CCNNNNNNNGG	9 cut(s)	180, 446, 884, 1100, 2185, 2455, 2878, 3079, 3406
BsmAI	GTCTC	7 cut(s)	24, 126, 608, 3030, 3267, 3625, 4328
BsmBI	CGTCTC	1 cut(s)	4328
BsmFI	GGGAC	5 cut(s)	2879, 3116, 4795, 4988, 5165
BsmI	GAATGC	3 cut(s)	525, 2440, 3448
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	4 cut(s)	60, 277, 1468, 3235
Bsp119I	TTCGAA	2 cut(s)	2875, 3559
Bsp1286I	GDGCHC	9 cut(s)	1516, 1836, 1996, 2206, 2449, 3643, 4313, 4364, 4675
Bsp13I	TCCGGA	1 cut(s)	2455
Bsp1407I	TGTACA	1 cut(s)	389
Bsp1720I	GCTNAGC	1 cut(s)	5110
Bsp19I	CCATGG	3 cut(s)	321, 1694, 3459
BspCNI	CTCAG	7 cut(s)	253, 559, 1850, 2767, 4324, 4658, 5012
BspEI	TCCGGA	1 cut(s)	2455
BspFNI	CGCG	1 cut(s)	1998
BspHI	TCATGA	1 cut(s)	5131
BspLI	GGNNCC	5 cut(s)	100, 1188, 1473, 1513, 4855
BspMAI	CTGCAG	3 cut(s)	886, 1005, 4390
BspPI	GGATC	4 cut(s)	274, 1224, 3011, 5136
BspQI	GCTCTTC	3 cut(s)	1143, 2215, 3294
BspT104I	TTCGAA	2 cut(s)	2875, 3559
BspTNI	GGTCTC	1 cut(s)	24
BsrDI	GCAATG	4 cut(s)	1785, 2631, 3598, 3883
BsrFI	RCCGGY	3 cut(s)	764, 785, 3587
BsrGI	TGTACA	1 cut(s)	389
BsrI	ACTGG	4 cut(s)	2173, 2679, 2975, 3617
BssAI	RCCGGY	3 cut(s)	764, 785, 3587
BssNI	GRCGYC	5 cut(s)	5, 39, 4201, 4784, 5011
BssSI	CACGAG	3 cut(s)	1545, 3117, 4776
BssT1I	CCWWGG	7 cut(s)	321, 1694, 3355, 3459, 3536, 4857, 5006
Bst2BI	CACGAG	3 cut(s)	1545, 3117, 4776
Bst2UI	CCWGG	7 cut(s)	192, 2078, 2451, 2704, 3822, 4424, 4788
Bst4CI	ACNGT	9 cut(s)	394, 803, 843, 850, 1056, 1620, 2684, 3024, 3544
Bst6I	CTCTTC	8 cut(s)	307, 1143, 1750, 2215, 2229, 3036, 3045, 3294
BstACI	GRCGYC	5 cut(s)	5, 39, 4201, 4784, 5011
BstAPI	GCANNNNNTGC	3 cut(s)	1088, 2000, 5177
BstAUI	TGTACA	1 cut(s)	389
BstBAI	YACGTR	2 cut(s)	995, 1208
BstBI	TTCGAA	2 cut(s)	2875, 3559
BstC8I	GCNNGC	8 cut(s)	138, 649, 870, 1996, 2206, 3827, 4510, 4731
BstDSI	CCRYGG	5 cut(s)	321, 1694, 2998, 3064, 3459
BstEII	GGTNACC	2 cut(s)	1614, 5202
BstENI	CCTNNNNNAGG	1 cut(s)	882
BstF5I	GGATG	9 cut(s)	1308, 1585, 2086, 2254, 2464, 2500, 2515, 3573, 4937
BstFNI	CGCG	1 cut(s)	1998
BstH2I	RGCGCY	1 cut(s)	2585
BstHHI	GCGC	2 cut(s)	2000, 2584
BstMAI	GTCTC	7 cut(s)	24, 126, 608, 3030, 3267, 3625, 4328
BstNI	CCWGG	7 cut(s)	192, 2078, 2451, 2704, 3822, 4424, 4788
BstNSI	RCATGY	5 cut(s)	831, 2096, 3098, 3829, 4733
BstPI	GGTNACC	2 cut(s)	1614, 5202
BstSCI	CCNGG	8 cut(s)	179, 190, 2076, 2449, 2702, 3820, 4422, 4786
BstSFI	CTRYAG	4 cut(s)	882, 1001, 4140, 4386
BstSLI	GKGCMC	3 cut(s)	1836, 1996, 2449
BstUI	CGCG	1 cut(s)	1998
BstV2I	GAAGAC	4 cut(s)	66, 1954, 2749, 3591
BstX2I	RGATCY	3 cut(s)	266, 1229, 2528
BstXI	CCANNNNNNTGG	3 cut(s)	2578, 2638, 3624
BstYI	RGATCY	3 cut(s)	266, 1229, 2528
BsuI	GTATCC	1 cut(s)	3080
BtgI	CCRYGG	5 cut(s)	321, 1694, 2998, 3064, 3459
BtrI	CACGTC	1 cut(s)	1424
BtsCI	GGATG	9 cut(s)	1308, 1585, 2086, 2254, 2464, 2500, 2515, 3573, 4937
BtsI	GCAGTG	1 cut(s)	4451
BtsIMutI	CAGTG	9 cut(s)	333, 739, 839, 1052, 2982, 3020, 3336, 4451, 4675
Cac8I	GCNNGC	8 cut(s)	138, 649, 870, 1996, 2206, 3827, 4510, 4731
CaiI	CAGNNNCTG	3 cut(s)	801, 841, 3746
CciI	TCATGA	1 cut(s)	5131
CfoI	GCGC	2 cut(s)	2000, 2584
Cfr10I	RCCGGY	3 cut(s)	764, 785, 3587
Cfr13I	GGNCC	9 cut(s)	98, 813, 1472, 1796, 2453, 2515, 2628, 3585, 4339
CseI	GACGC	5 cut(s)	2042, 4190, 4547, 4792, 5000
Csp6I	GTAC	7 cut(s)	390, 557, 953, 3223, 3300, 3352, 4470
CspAI	ACCGGT	1 cut(s)	785
CspCI	CAANNNNNGTGG	4 cut(s)	1398, 1433, 2895, 2930
CviQI	GTAC	7 cut(s)	390, 557, 953, 3223, 3300, 3352, 4470
DraI	TTTAAA	3 cut(s)	1929, 2656, 4405
DrdI	GACNNNNNNGTC	1 cut(s)	38
DriI	GACNNNNNGTC	1 cut(s)	1635
DseDI	GACNNNNNNGTC	1 cut(s)	38
EaeI	YGGCCR	5 cut(s)	742, 1709, 2470, 3376, 3533
Eam1104I	CTCTTC	8 cut(s)	307, 1143, 1750, 2215, 2229, 3036, 3045, 3294
Eam1105I	GACNNNNNGTC	1 cut(s)	1635
EarI	CTCTTC	8 cut(s)	307, 1143, 1750, 2215, 2229, 3036, 3045, 3294
EciI	GGCGGA	2 cut(s)	29, 2138
Eco130I	CCWWGG	7 cut(s)	321, 1694, 3355, 3459, 3536, 4857, 5006
Eco147I	AGGCCT	1 cut(s)	2846
Eco24I	GRGCYC	1 cut(s)	1516
Eco31I	GGTCTC	1 cut(s)	24
Eco32I	GATATC	3 cut(s)	228, 497, 1329
Eco47I	GGWCC	5 cut(s)	1472, 1796, 2453, 2515, 3585
Eco57I	CTGAAG	8 cut(s)	60, 570, 1961, 2067, 2424, 2925, 3069, 4265
Eco72I	CACGTG	1 cut(s)	995
Eco88I	CYCGRG	4 cut(s)	60, 277, 1468, 3235
Eco91I	GGTNACC	2 cut(s)	1614, 5202
EcoNI	CCTNNNNNAGG	1 cut(s)	882
EcoO109I	RGGNCCY	1 cut(s)	1472
EcoO65I	GGTNACC	2 cut(s)	1614, 5202
EcoRI	GAATTC	1 cut(s)	3417
EcoRII	CCWGG	7 cut(s)	190, 2076, 2449, 2702, 3820, 4422, 4786
EcoRV	GATATC	3 cut(s)	228, 497, 1329
EcoT14I	CCWWGG	7 cut(s)	321, 1694, 3355, 3459, 3536, 4857, 5006
EcoT22I	ATGCAT	1 cut(s)	4327
EcoT38I	GRGCYC	1 cut(s)	1516
ErhI	CCWWGG	7 cut(s)	321, 1694, 3355, 3459, 3536, 4857, 5006
Esp3I	CGTCTC	1 cut(s)	4328
FalI	AAGNNNNNCTT	8 cut(s)	523, 555, 1448, 1480, 3042, 3074, 4872, 4904
FaqI	GGGAC	5 cut(s)	2879, 3116, 4795, 4988, 5165
FauI	CCCGC	1 cut(s)	109
FauNDI	CATATG	2 cut(s)	1347, 1572
FbaI	TGATCA	3 cut(s)	1750, 2269, 4819
FblI	GTMKAC	2 cut(s)	1534, 3734
FokI	GGATG	9 cut(s)	1295, 1592, 2093, 2261, 2471, 2507, 2522, 3580, 4944
FriOI	GRGCYC	1 cut(s)	1516
GlaI	GCGC	2 cut(s)	1999, 2583
GsaI	CCCAGC	1 cut(s)	455
GsuI	CTGGAG	1 cut(s)	2958
HaeII	RGCGCY	1 cut(s)	2585
HapII	CCGG	6 cut(s)	181, 765, 786, 816, 2456, 3588
HgaI	GACGC	5 cut(s)	2042, 4190, 4547, 4792, 5000
HhaI	GCGC	2 cut(s)	2000, 2584
Hin1I	GRCGYC	5 cut(s)	5, 39, 4201, 4784, 5011
Hin6I	GCGC	2 cut(s)	1998, 2582
HinP1I	GCGC	2 cut(s)	1998, 2582
HincII	GTYRAC	4 cut(s)	132, 846, 1343, 2785
HindII	GTYRAC	4 cut(s)	132, 846, 1343, 2785
HindIII	AAGCTT	4 cut(s)	1462, 1820, 1916, 4256
HpaI	GTTAAC	2 cut(s)	132, 2785
HpaII	CCGG	6 cut(s)	181, 765, 786, 816, 2456, 3588
HphI	GGTGA	7 cut(s)	1502, 1608, 1768, 2149, 2168, 3026, 3259
HpyCH4III	ACNGT	9 cut(s)	394, 803, 843, 850, 1056, 1620, 2684, 3024, 3544
HpyCH4IV	ACGT	8 cut(s)	5, 39, 51, 459, 994, 1207, 1423, 3775
HpySE526I	ACGT	8 cut(s)	5, 39, 51, 459, 994, 1207, 1423, 3775
Hsp92I	GRCGYC	5 cut(s)	5, 39, 4201, 4784, 5011
HspAI	GCGC	2 cut(s)	1998, 2582
Kpn2I	TCCGGA	1 cut(s)	2455
Ksp22I	TGATCA	3 cut(s)	1750, 2269, 4819
KspAI	GTTAAC	2 cut(s)	132, 2785
LguI	GCTCTTC	3 cut(s)	1143, 2215, 3294
LmnI	GCTCC	8 cut(s)	818, 1126, 1511, 2065, 2695, 3646, 4505, 4738
LweI	GCATC	8 cut(s)	89, 245, 2071, 3958, 4334, 4606, 4928, 5180
MaeII	ACGT	8 cut(s)	5, 39, 51, 459, 994, 1207, 1423, 3775
MfeI	CAATTG	9 cut(s)	683, 1244, 1443, 3242, 3888, 4173, 4475, 4481, 5032
MflI	RGATCY	3 cut(s)	266, 1229, 2528
MhlI	GDGCHC	9 cut(s)	1516, 1836, 1996, 2206, 2449, 3643, 4313, 4364, 4675
MlsI	TGGCCA	2 cut(s)	2472, 3535
MluNI	TGGCCA	2 cut(s)	2472, 3535
MlyI	GAGTC	3 cut(s)	3222, 4785, 5147
MmeI	TCCRAC	6 cut(s)	412, 616, 1650, 2487, 2772, 4089
Mox20I	TGGCCA	2 cut(s)	2472, 3535
Mph1103I	ATGCAT	1 cut(s)	4327
MroI	TCCGGA	1 cut(s)	2455
MroXI	GAANNNNTTC	2 cut(s)	2013, 3054
MscI	TGGCCA	2 cut(s)	2472, 3535
MslI	CAYNNNNRTG	3 cut(s)	750, 1238, 2636
Msp20I	TGGCCA	2 cut(s)	2472, 3535
MspA1I	CMGCKG	5 cut(s)	3743, 4064, 4686, 4964, 5177
MspI	CCGG	6 cut(s)	181, 765, 786, 816, 2456, 3588
MspR9I	CCNGG	8 cut(s)	181, 192, 2078, 2451, 2704, 3822, 4424, 4788
MunI	CAATTG	9 cut(s)	683, 1244, 1443, 3242, 3888, 4173, 4475, 4481, 5032
Mva1269I	GAATGC	3 cut(s)	525, 2440, 3448
MvaI	CCWGG	7 cut(s)	192, 2078, 2451, 2704, 3822, 4424, 4788
MvnI	CGCG	1 cut(s)	1998
NciI	CCSGG	1 cut(s)	181
NcoI	CCATGG	3 cut(s)	321, 1694, 3459
NdeI	CATATG	2 cut(s)	1347, 1572
NlaIV	GGNNCC	5 cut(s)	100, 1188, 1473, 1513, 4855
NmeAIII	GCCGAG	2 cut(s)	936, 2926
NmuCI	GTSAC	6 cut(s)	106, 331, 830, 1056, 1614, 2156
NsiI	ATGCAT	1 cut(s)	4327
NspI	RCATGY	5 cut(s)	831, 2096, 3098, 3829, 4733
NspV	TTCGAA	2 cut(s)	2875, 3559
PaeI	GCATGC	2 cut(s)	3829, 4733
PaeR7I	CTCGAG	1 cut(s)	60
PagI	TCATGA	1 cut(s)	5131
PceI	AGGCCT	1 cut(s)	2846
PciSI	GCTCTTC	3 cut(s)	1143, 2215, 3294
PcsI	WCGNNNNNNNCGW	3 cut(s)	33, 48, 957
PctI	GAATGC	3 cut(s)	525, 2440, 3448
PdmI	GAANNNNTTC	2 cut(s)	2013, 3054
PflFI	GACNNNGTC	1 cut(s)	7
PflMI	CCANNNNNTGG	4 cut(s)	446, 1100, 2185, 3406
PfoI	TCCNGGA	2 cut(s)	2702, 4422
PinAI	ACCGGT	1 cut(s)	785
PleI	GAGTC	3 cut(s)	3222, 4785, 5147
PmaCI	CACGTG	1 cut(s)	995
PmlI	CACGTG	1 cut(s)	995
PpsI	GAGTC	3 cut(s)	3222, 4785, 5147
Ppu21I	YACGTR	2 cut(s)	995, 1208
PpuMI	RGGWCCY	1 cut(s)	1472
PsiI	TTATAA	2 cut(s)	621, 809
Psp1406I	AACGTT	1 cut(s)	3775
Psp5II	RGGWCCY	1 cut(s)	1472
Psp6I	CCWGG	7 cut(s)	190, 2076, 2449, 2702, 3820, 4422, 4786
PspCI	CACGTG	1 cut(s)	995
PspEI	GGTNACC	2 cut(s)	1614, 5202
PspFI	CCCAGC	1 cut(s)	451
PspGI	CCWGG	7 cut(s)	190, 2076, 2449, 2702, 3820, 4422, 4786
PspN4I	GGNNCC	5 cut(s)	100, 1188, 1473, 1513, 4855
PspPI	GGNCC	9 cut(s)	98, 813, 1472, 1796, 2453, 2515, 2628, 3585, 4339
PspPPI	RGGWCCY	1 cut(s)	1472
PsrI	GAACNNNNNNTAC	2 cut(s)	945, 977
PstI	CTGCAG	3 cut(s)	886, 1005, 4390
PstNI	CAGNNNCTG	3 cut(s)	801, 841, 3746
PsuI	RGATCY	3 cut(s)	266, 1229, 2528
PsyI	GACNNNGTC	1 cut(s)	7
PvuII	CAGCTG	2 cut(s)	4064, 5177
RsaI	GTAC	7 cut(s)	391, 558, 954, 3224, 3301, 3353, 4471
RsaNI	GTAC	7 cut(s)	390, 557, 953, 3223, 3300, 3352, 4470
RseI	CAYNNNNRTG	3 cut(s)	750, 1238, 2636
SapI	GCTCTTC	3 cut(s)	1143, 2215, 3294
Sau96I	GGNCC	9 cut(s)	98, 813, 1472, 1796, 2453, 2515, 2628, 3585, 4339
SchI	GAGTC	3 cut(s)	3222, 4785, 5147
ScrFI	CCNGG	8 cut(s)	181, 192, 2078, 2451, 2704, 3822, 4424, 4788
SduI	GDGCHC	9 cut(s)	1516, 1836, 1996, 2206, 2449, 3643, 4313, 4364, 4675
SfaNI	GCATC	8 cut(s)	89, 245, 2071, 3958, 4334, 4606, 4928, 5180
SfcI	CTRYAG	4 cut(s)	882, 1001, 4140, 4386
Sfr274I	CTCGAG	1 cut(s)	60
SfuI	TTCGAA	2 cut(s)	2875, 3559
SinI	GGWCC	5 cut(s)	1472, 1796, 2453, 2515, 3585
SlaI	CTCGAG	1 cut(s)	60
SmiMI	CAYNNNNRTG	3 cut(s)	750, 1238, 2636
SmlI	CTYRAG	3 cut(s)	60, 1007, 4696
SmoI	CTYRAG	3 cut(s)	60, 1007, 4696
SpeI	ACTAGT	2 cut(s)	1412, 1718
SphI	GCATGC	2 cut(s)	3829, 4733
SseBI	AGGCCT	1 cut(s)	2846
SspI	AATATT	5 cut(s)	1285, 2260, 2317, 2344, 3676
StuI	AGGCCT	1 cut(s)	2846
StyD4I	CCNGG	8 cut(s)	179, 190, 2076, 2449, 2702, 3820, 4422, 4786
StyI	CCWWGG	7 cut(s)	321, 1694, 3355, 3459, 3536, 4857, 5006
TaaI	ACNGT	9 cut(s)	394, 803, 843, 850, 1056, 1620, 2684, 3024, 3544
TaiI	ACGT	8 cut(s)	8, 42, 54, 462, 997, 1210, 1426, 3778
TatI	WGTACW	2 cut(s)	389, 556
TauI	GCSGC	4 cut(s)	236, 744, 1406, 3746
TscAI	CASTG	9 cut(s)	340, 739, 846, 1059, 2982, 3027, 3336, 4458, 4675
TseFI	GTSAC	6 cut(s)	106, 331, 830, 1056, 1614, 2156
Tsp45I	GTSAC	6 cut(s)	106, 331, 830, 1056, 1614, 2156
TspGWI	ACGGA	7 cut(s)	42, 125, 1799, 2507, 3240, 4535, 5204
TspRI	CASTG	9 cut(s)	340, 739, 846, 1059, 2982, 3027, 3336, 4458, 4675
Tth111I	GACNNNGTC	1 cut(s)	7
Van91I	CCANNNNNTGG	4 cut(s)	446, 1100, 2185, 3406
VneI	GTGCAC	1 cut(s)	1992
VpaK11BI	GGWCC	5 cut(s)	1472, 1796, 2453, 2515, 3585
XagI	CCTNNNNNAGG	1 cut(s)	882
XbaI	TCTAGA	2 cut(s)	269, 3602
XceI	RCATGY	5 cut(s)	831, 2096, 3098, 3829, 4733
XhoI	CTCGAG	1 cut(s)	60
XmiI	GTMKAC	2 cut(s)	1534, 3734
XmnI	GAANNNNTTC	2 cut(s)	2013, 3054
ZraI	GACGTC	2 cut(s)	6, 40
Zsp2I	ATGCAT	1 cut(s)	4327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.