Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002976

Physical Location & Seq

Genomic Coordinates Forward (+)

24485735 .. 24487341

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G257000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGACTGCAAAAACTGTGAAAGATGTGTCCCCACACGAGTTCGTTAAGGCCTACGCCGCTCATCTGAAGCGATCTGGCAAGATTGAGCTTCCTCCTTGGACTGATATTGTCAAGACTGGAACATTCAAGGAGCTGGCTCCTTATGATCCTGACTGGTACTATGTCAGAGCTGCCTCCATTGCAAGGAAGATCTACTTGAGGGGAGGTCTTGGTGTTGGTGCCTTCCGTAGGATTTACGGTGGAAGCAAGAGGAATGGAAGCCGTCCACCACATTTCTGCGAGAGCAGTGGTGCTATTGCCCGACATATACTACAACAGTTGCAGAAAATGAATATTGTCGACCTTGACCCAAAGGGTGGGAGGAGAATCACATCAAGCGGTCAACGGGATCTTGACCAAGTTGCTGGGCGGATTGTGGTCACCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

144

Amino Acids

15.85

Weight (kDa)

10.14

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02080 AT5G15520 AT5G61170
fragaria_vesca	FvH4_5g14200 FvH4_6g47110 FvH4_6g47110
malus_domestica	MD06G1200400.v1.1 MD09G1064000.v1.1 MD14G1209900.v1.1 MD17G1057300.v1.1
prunus_persica	Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.5G203100_v2.0.a1
pyrus_communis	pycom06g17700 pycom111g05360 pycom14g17340
rosa_chinensis	RchiOBHm_Chr2g0166161 RchiOBHm_Chr7g0182731
rosa_laevigata	RLG00000005105 RLG00000021591
rosa_multiflora	Rmu_sc0003127.1_g000026 Rmu_sc0006218.1_g000031 Rmu_sc0024464.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085150 Rroxscaffold_3G00271030
rosa_rugosa	Rorug02G0520800 Rorug06G0449700
rosa_samantha	Rh2AG586900 Rh2BG598700 Rh2CG569400 Rh2DG608600 Rh7AG053500 Rh7BG053000 Rh7CG054600 Rh7DG052800
rosa_wichuraiana	Rw2G048930 Rw7G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccB7I	CCANNNNNTGG	1 cut(s)	359
AccBSI	CCGCTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	342
AciI	CCGC	3 cut(s)	60, 381, 412
AclWI	GGATC	2 cut(s)	143, 399
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	186, 231, 359
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	3 cut(s)	91, 136, 173
AluI	AGCT	3 cut(s)	91, 136, 173
AlwI	GGATC	2 cut(s)	143, 399
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	415
BanI	GGYRCC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	249
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	2 cut(s)	60, 174
BlsI	GCNGC	2 cut(s)	61, 175
BmiI	GGNNCC	2 cut(s)	141, 223
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 231, 359
Bse1I	ACTGG	2 cut(s)	124, 161
Bse3DI	GCAATG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	98
BseLI	CCNNNNNNNGG	3 cut(s)	186, 231, 359
BseMI	GCAATG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	124, 161
BseRI	GAGGAG	1 cut(s)	379
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	3 cut(s)	186, 231, 359
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	53
Bsp143I	GATC	4 cut(s)	74, 148, 192, 391
BspACI	CCGC	3 cut(s)	60, 381, 412
BspANI	GGCC	1 cut(s)	53
BspLI	GGNNCC	2 cut(s)	141, 223
BspPI	GGATC	2 cut(s)	143, 399
BspT107I	GGYRCC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	180
BsrI	ACTGG	2 cut(s)	124, 161
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	4 cut(s)	74, 148, 192, 391
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	98
Bst2BI	CACGAG	1 cut(s)	38
Bst4CI	ACNGT	3 cut(s)	19, 242, 321
BstC8I	GCNNGC	1 cut(s)	138
BstEII	GGTNACC	1 cut(s)	421
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstKTI	GATC	4 cut(s)	77, 151, 195, 394
BstMBI	GATC	4 cut(s)	74, 148, 192, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 182
BstPI	GGTNACC	1 cut(s)	421
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	2 cut(s)	192, 391
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	2 cut(s)	192, 391
BsuRI	GGCC	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	1 cut(s)	429
CviJI	RGCY	6 cut(s)	53, 91, 136, 140, 173, 264
CviKI_1	RGCY	6 cut(s)	53, 91, 136, 140, 173, 264
CviQI	GTAC	1 cut(s)	160
DpnI	GATC	4 cut(s)	76, 150, 194, 393
DpnII	GATC	4 cut(s)	74, 148, 192, 391
EciI	GGCGGA	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	98
Eco147I	AGGCCT	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	89
Eco91I	GGTNACC	1 cut(s)	421
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	1 cut(s)	432
FaiI	YATR	5 cut(s)	147, 165, 309, 311, 430
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	1 cut(s)	428
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	60, 174
Fsp4HI	GCNGC	2 cut(s)	60, 174
GluI	GCNGC	2 cut(s)	60, 174
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	53
Hin1II	CATG	1 cut(s)	432
HincII	GTYRAC	2 cut(s)	343, 386
HindII	GTYRAC	2 cut(s)	343, 386
HinfI	GANTC	1 cut(s)	369
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	3 cut(s)	269, 343, 386
Hpy188I	TCNGA	2 cut(s)	69, 170
Hpy188III	TCNNGA	3 cut(s)	115, 152, 395
Hpy8I	GTNNAC	3 cut(s)	269, 343, 386
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	3 cut(s)	19, 242, 321
HpyCH4V	TGCA	3 cut(s)	11, 185, 325
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 182
Hsp92II	CATG	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	74, 148, 192, 391
LmnI	GCTCC	2 cut(s)	133, 145
LpnPI	CCDG	6 cut(s)	63, 105, 122, 142, 165, 393
Lsp1109I	GCAGC	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	4 cut(s)	76, 150, 194, 393
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	4 cut(s)	74, 148, 192, 391
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	2 cut(s)	192, 391
MnlI	CCTC	6 cut(s)	105, 187, 195, 200, 246, 357
MseI	TTAA	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	59, 182
NdeII	GATC	4 cut(s)	74, 148, 192, 391
NlaIII	CATG	1 cut(s)	432
NlaIV	GGNNCC	2 cut(s)	141, 223
NmuCI	GTSAC	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	369
PflMI	CCANNNNNTGG	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	61, 175
PspEI	GGTNACC	1 cut(s)	421
PspFI	CCCAGC	1 cut(s)	407
PspN4I	GGNNCC	2 cut(s)	141, 223
PsuI	RGATCY	2 cut(s)	192, 391
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SalI	GTCGAC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	60, 174
Sau3AI	GATC	4 cut(s)	74, 148, 192, 391
SetI	ASST	5 cut(s)	93, 138, 175, 211, 348
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	3 cut(s)	60, 381, 412
SspI	AATATT	1 cut(s)	337
StuI	AGGCCT	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	3 cut(s)	19, 242, 321
TaqI	TCGA	1 cut(s)	342
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	369
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	421
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	359
XagI	CCTNNNNNAGG	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.