Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002976

Physical Location & Seq

Genomic Coordinates Reverse (-)

5037021 .. 5038754

Gene Structure 1734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGACTGGTAAAACCGTGAAAGATGTTTCTCCTCACGATTTCGTGAAGGCTTACGCTTCTCACCTCAAGCGATCTGGAAAGATTGAGCTTCCTCTATGGACAGACATTGTGAAGACTGGTCGTTTGAAGGAGCTTGCTCCATATGACCCTGATTGGTACTACATTAGAGCTGCTTCTATGGCCAGAAAGATTTACTTGAGAGGAGGTCTTGGTGTTGGTGCTTTCAGAAGAATTTATGGAGGTAGCAAAAGAAATGGAAGTCGACCACCACATTTCTGTAAGAGCAGTGGTGGTATTGCTCGCCATATTCTCCAACAGTTGGAGACAATGAGCATTGTCGAGCTTGACACTAAAGGAGGGAGAAGAATCACTTCGAGCGGTCAACGGGATTTGGATCAGGTTGCTGGGCGTATTGCAGCTGAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

143

Amino Acids

15.82

Weight (kDa)

10.14

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19e	PF01090	6 - 141	1.9e-57	Ribosomal protein S19e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02080 AT5G15520 AT5G61170
fragaria_vesca	FvH4_5g14200 FvH4_6g47110 FvH4_6g47110
malus_domestica	MD06G1200400.v1.1 MD09G1064000.v1.1 MD14G1209900.v1.1 MD17G1057300.v1.1
prunus_persica	Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.5G203100_v2.0.a1
pyrus_communis	pycom06g17700 pycom111g05360 pycom14g17340
rosa_chinensis	RchiOBHm_Chr2g0166161 RchiOBHm_Chr7g0182731
rosa_laevigata	RLG00000005105 RLG00000021591
rosa_multiflora	Rmu_sc0003127.1_g000026 Rmu_sc0006218.1_g000031 Rmu_sc0024464.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085150 Rroxscaffold_3G00271030
rosa_rugosa	Rorug02G0520800 Rorug06G0449700
rosa_samantha	Rh2AG586900 Rh2BG598700 Rh2CG569400 Rh2DG608600 Rh7AG053500 Rh7BG053000 Rh7CG054600 Rh7DG052800
rosa_wichuraiana	Rw2G048930 Rw7G004350

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccBSI	CCGCTC	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	265
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	234
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	322
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	5 cut(s)	91, 136, 173, 346, 422
AluI	AGCT	5 cut(s)	91, 136, 173, 346, 422
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	183
ApeKI	GCWGC	2 cut(s)	173, 419
ApoI	RAATTY	1 cut(s)	234
ArsI	GACNNNNNNTTYG	2 cut(s)	109, 141
Asp700I	GAANNNNTTC	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	56
BalI	TGGCCA	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	160
BcoDI	GTCTC	1 cut(s)	320
BisI	GCNGC	2 cut(s)	174, 420
BlsI	GCNGC	2 cut(s)	175, 421
BpiI	GAAGAC	1 cut(s)	122
BpuEI	CTTGAG	2 cut(s)	53, 220
BsaBI	GATNNNNATC	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	2 cut(s)	13, 124
Bse8I	GATNNNNATC	1 cut(s)	396
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseNI	ACTGG	2 cut(s)	13, 124
BseRI	GAGGAG	2 cut(s)	24, 219
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	74, 397
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	1 cut(s)	185
BspHI	TCATGA	1 cut(s)	428
BspPI	GGATC	1 cut(s)	405
BsrBI	CCGCTC	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	13, 124
BssMI	GATC	2 cut(s)	74, 397
Bst4CI	ACNGT	2 cut(s)	19, 321
BstC8I	GCNNGC	2 cut(s)	138, 304
BstKTI	GATC	2 cut(s)	77, 400
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	2 cut(s)	74, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	185
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	138, 304
CciI	TCATGA	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	1 cut(s)	429
CviJI	RGCY	7 cut(s)	53, 91, 136, 173, 185, 346, 422
CviKI_1	RGCY	7 cut(s)	53, 91, 136, 173, 185, 346, 422
CviQI	GTAC	1 cut(s)	160
DpnI	GATC	2 cut(s)	76, 399
DpnII	GATC	2 cut(s)	74, 397
EaeI	YGGCCR	1 cut(s)	183
FaeI	CATG	1 cut(s)	432
FaiI	YATR	7 cut(s)	100, 145, 147, 182, 240, 309, 430
FalI	AAGNNNNNCTT	4 cut(s)	182, 214, 358, 390
FatI	CATG	1 cut(s)	428
FauNDI	CATATG	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	174, 420
Fsp4HI	GCNGC	2 cut(s)	174, 420
GluI	GCNGC	2 cut(s)	174, 420
GsaI	CCCAGC	1 cut(s)	411
HaeIII	GGCC	1 cut(s)	185
Hin1II	CATG	1 cut(s)	432
HincII	GTYRAC	2 cut(s)	266, 386
HindII	GTYRAC	2 cut(s)	266, 386
HinfI	GANTC	2 cut(s)	369, 425
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	266, 386
Hpy188I	TCNGA	1 cut(s)	230
Hpy188III	TCNNGA	4 cut(s)	38, 46, 78, 429
Hpy8I	GTNNAC	2 cut(s)	266, 386
HpyAV	CCTTC	2 cut(s)	43, 124
HpyCH4III	ACNGT	2 cut(s)	19, 321
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	74, 397
LmnI	GCTCC	2 cut(s)	133, 145
LpnPI	CCDG	6 cut(s)	63, 105, 165, 199, 386, 393
Lsp1109I	GCAGC	1 cut(s)	160
MalI	GATC	2 cut(s)	76, 399
MbiI	CCGCTC	1 cut(s)	381
MboI	GATC	2 cut(s)	74, 397
MboII	GAAGA	3 cut(s)	127, 243, 378
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	1 cut(s)	234
MluNI	TGGCCA	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	303, 340
MnlI	CCTC	7 cut(s)	45, 77, 105, 197, 200, 236, 353
Mox20I	TGGCCA	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	373
MscI	TGGCCA	1 cut(s)	185
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeI	CATATG	1 cut(s)	145
NdeII	GATC	2 cut(s)	74, 397
NlaIII	CATG	1 cut(s)	432
PagI	TCATGA	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	369, 425
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	175, 421
PspFI	CCCAGC	1 cut(s)	407
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SalI	GTCGAC	1 cut(s)	264
SatI	GCNGC	2 cut(s)	174, 420
Sau3AI	GATC	2 cut(s)	74, 397
SetI	ASST	9 cut(s)	69, 93, 138, 175, 211, 247, 348, 405, 424
SmlI	CTYRAG	2 cut(s)	68, 199
SmoI	CTYRAG	2 cut(s)	68, 199
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	19, 321
TaqI	TCGA	3 cut(s)	265, 342, 377
TasI	AATT	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	369, 425
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	2 cut(s)	173, 419
TspRI	CASTG	1 cut(s)	295
Van91I	CCANNNNNTGG	1 cut(s)	322
XapI	RAATTY	1 cut(s)	234
XmiI	GTMKAC	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.