Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002976

Physical Location & Seq

Genomic Coordinates Reverse (-)

57954880 .. 57964246

Gene Structure 9367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0449700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 7863 bp

ATGGAGAAGAAGAAGAGCCGTACCAATCTGCTCGCTGCTGGCCGTAAAAAGCTTCAACAATTTCGTCAGAAGAAGGATAAAGGCAGTGGAAGCCATGGAAAATCCACGAAAAAGTCTGGAAAATCAGAGCAGCATGCAACTAAACCTACAGCAGCATCGTCTCAGGTCCGTGACGGAGAAACTGAGTCTGCTGTAGGTTCTAATTCTGCAGACTCTGACACTAGTCAAATTCGGGTTAGTAAGCCTGTTCAGAATGAAGGTGAGAGTACTAGGACTGCTGCTGCTAAGGTGGCAAGAGACATTTCATTGGACACTTCACATACAGTGGATTCTGGAGGAGAAGCCAAGAATTCAAAGATGTCTATACAGGTTGATGTGTCAGGCGCCCAACATGCTTCAGTCGATATTACAGAGAGGAAGGAGTCATTGCCTTCACAGGAAAATATTAAAACATCGTTAGTGCAAAAGAGAGAAGATCAGGAAGCTGAGGGTTTGGATGCAAGGCAGTCTAATCCTAGTCGTGAAGTAAAAGTGGAGCTTGAAGGAGATATCAGGCCTTCTGCTTCCGAGCTTGAAAGAAGTCTCGAGTCTTCTTCTGGTCCAGCTTCCTATGTAGATGAACCAACTGGTGCAGTGGATGAAGCATCTGTTTCAGCTGGTGCAACCATGTTATCAGGCAGGGAAGAAAGAGTTCTGGCAGATACAGAATATCAGGCAGTTGGAGAGGATTGTCATCAGGAACATGTTATTGATGGTTGTGAAAGGGCTTTGGAAACAAATATGATGAGTTCGGATAGAGGACCTGCATCACCTGTTGCAGATCCGAGCTCAATCAGTCTCTCACAGATCACAGAAGTTATTAAGAGGCTTAATGAAGAAGAGTTCTGTATTCTTCTTAAGTCCATTGAATCAGTTTCTAGTACATTGCTGGGGACCAACAGTTTATTTGTAGCAGAACATGGCTTTCGAGAATTTTTTGAGCAACTTAAAGAAGAATTGGTTCTCACAAATTTCACCAAAGATGTCTTTCACTTGCAGATTGAACAGCAGTTTGAGATGCAACTAGAGTTTGATTGCCAGCATCATCGGTTGCTTGAGGAAACATCTCTTCTTCGTGCTTCACTGAATGAAGTTCGTGAGAAGAACCAGTGTCTTGCTGAAGAGCTTGCACAGTGCAGGGGTGAACTCCAAGCTGTTGCTTGTGGGAAGGAGGAGCTCCAAAACAAATTTCATACTGCGAAGGTGGAGGGTGAAGAAGCTTCTTCTAGAACAATTGAGTTGCATAACAACCTGGAAAGGGCACAGCAGGATTTGTTCAGACTGTCAACAGAGTTAGCTGATTGTAAAGGTTTGGTGCAAGCCTTACAGGTGGAAAATGAGACCTTAAATGGGACTATAGTGTCAGCGGATGAAGTTAAAAGTAAACTTATGGAGCAAAATAATTTGTATCTTCTTGAGAAGGAGAAGCTTTCAACTGACCTGGTTGATCGTGAAAGTTTAGTGGCAACTCTACGGGGTCAAATATCAACCTTAAGCGGGAATTTGGATTCAGTAACACATGAGAGGGAGCATCTTTCTTGTGAAAATGAGAAACTTGCAACAGAACTGGCTGACAGGAAGAATATAGTATCAGCTTTGCAGGTAGAAAATGCCAGCTGTCTTGCTTTGGTTATGGAGGAGAAAAAGAAGCTTGAGGAGGAGAGGGAGTATTCTGCTCATGAGAATGAGAGACTTTCAGCCGAACTTGTTGTTCTTCAAGAACGGTTATCTGCAGAACGTGAAGAACAAGTAAGGTTTGAGGTTGACCTAAAAGAAACAACAAAACGCCTTGAACAGCTCACTGATGAAAAGATTACTAGCAATCTGGACATACTTAAAGCTAAGATGAGTGAGGTTGAAAAGAGTGGGTTTATAATACCAGCTCAAGTTGGGGAAGCTGGGAACCAAGTTGAACTTAGCAGGGGTCATGATCTTGCAACTGAAGATGATAACTCTCAGCAAATTCACGGGAAGCAAGACAGTGAAGCTTCCTTTGTGGTGGATAAATCTTTATCTGATGGCTGTGTAGGGGGCTCACCATTTGTGAATACTGAGCAGGAAGTCTTTGATGATTCCGATGGGTTTATCGCACTGAATGGACACTTGGACAAGGCAGATAAAATGTTGCATAAACTTGTACAGGAAGTTGAAAGCATCTGCTCTCATTCCACATTGCTAAGCAAGTCCGGTCACAAAGTTCCTGTAGCTCAGGTATCAAAACTGATTCAAGCATTCGAGTCGAAGGCTCATCAAGATGAGCCAGTAGAGGGGGAAGCTCTAACCGATAATCAATCACCAGAAGATTCAGTTGTGTCGGTAAGAGAGCAAATCGGAAACCTGAGAGCATTATTTAAGCACATGCTGATGGATACTGCAAATGCCAGTCTACTGCTGAAGGAGGAGCGAGATGGTAGGAAAAATGCTGATGCCACCTCTGAGGAATTGAAGGATCAGAATGAGGCCTTGGAAGAATATTGCAAGAAACTGGGAGCAACGAACATTGAGCTCAGGGTCCTATATGAAGCTTTAGAAGAACATAGGGGAAGCATTGAATCTAGGAACTGTGAGCTTTTCATTCTCTGCGAATCCTTACAACTACAAGTCACTAATCTTAAAGTAGAAAACGTGGAAGCTGACAGAAAGCTGCATGTGTATGAATCAAGAACTAGTCAATTGCAGAGTCGGTTGCATGATCTACATCTAATTTCAAATGTTATGGTATCTCAAACCTCTGAGCAGTTGGAAAGTTTTCACAAGGAGGCTGCTGAGAAAGTTTTGATGCTTGAGCGCCATTGGAATTCAACTATTGATCCGGTTCTTGAAGCAACTGGCAAGCTTGATGAATCTCTTGGTAGGATCACCACAACTACAACAGTCTCTCATGATTCTTTGGACAGAATAAGTTATTCAGTTGCTTCTGTTTATGATGCCATCAGTTTTATTCAAGATCTGAAGGACAAACTTGAAAGTTCTCAAACAGAACATGAAGCAGTCTTTTCTTTATACAAAGAAGCGAATGAGAAATGCGATGATCTGCATGGAAAGAATCAAACGGCCAGTGACTTGTTGCAGAAGTTGTATGGCAACCTTTCTAAACTACTCACGGTTTTGCATGGGTCTACAGATGAAAGTGATATGTACTTAGAACCTGAGAAGTTTCCTGATCTTCTAGATTACAGTAATTATGGAACCATCATAGAACATGTGGAATCTTCTTTGAGGGGGAGTCTGCAACTTGAATCTGTTAACAAGAAACTAAATTCAGAGTTGATGGCTAGCGCTGAAGAAGTTGAGGAACTGAAACAAAGATGCCTTGGTTCTACTACTCTGCAGAAGTTAATAGAAGATGTTGAAGGGGTGCTGAAAGTGGAACATGCTGAGTTTCAAGTGGATAAAACCCCTGCTTCACACCTTGAATCACTGGTGTCATGTCTTGTTCGAAAATGTGAGGAGGCTGATGTGCAGGTAGGCTTATCTAAGGAAGAAGATTCTGGATCTAAGGTGGTGAAGCTGACTTCAATGCAGGAACAAGTACAGCAGTTAAATGCCTTGTGTCTCAAGCATGAAAGTGAACTCATTGTTCTAAGGGAAAGTTTACATCAGGCGGAGGAAGCACTTCTTGTTGCTCGTTCTGAGATACAAGGGAAAGTAAATGAACTTGAACAGTCAGAGCAACGGGTGTCTTCCCTTAGAGAGAAGCTTACCATTGCTGTCACCAAGGGGAAAGGTTTGGTTGTGCAGCGAGATGGTCTGAAGCAGTCCCTTAACGAGAAATATGTTGAACTGGAAAGATTCTCACAGGAACTGCAAATGAAAGATGCAAGGCTTCTTGAGATTGAAGCAAAACTTGAGGCATTTTCAGAGTCAGGTGAACGAGTGGAAGCTCTGGAATCTGAGCTTTCATATATTCGCAATTCAGCTACTGGATTAAGAGAATCATTCCTTCTCAAAGATTCTGTCCTTCAGAGAATAGAAGAGATCTTGGAAGACCTTGATCTGCCAGAGCATTTTTATTCAAGAGATATTATTGAGAAGATTGATTGGCTGGCCAGGACAGCTACTAGTAACACTTTACGTGTGACTGATTCAGATCAGAAGAGTTCTGCCGGTGGAGGTTCATACTCTGATGCTGGTTTTGTTGTTATGGATTCCTGGAAAGATGATGTACAGCCAAGTTCAGATTCAAGTGAAGATATCAAAAGAAAATATGATGAACTAAAGAGTAGATTTTATGGGTTGACTGAACAGAATGAAATGTTGGAACAATCCTTAATGGCAAGGAACAACATAGTACAGAGATGGGAGGAACTTTTGGACAGGATTGACATGCCACCACATCTGCGATCTGTGGAGCCAAAGGACAGGATCGATTGGTTAAGCAAAGCACTTTTAGAAGCGCAGGAAGATAATATGTCTCTGCAGCAGAAGGTTGTTAACCTAGAAAACCATTGTGTATCACTCACTGCTGATTTGGAAGACTCGCAAAGGGGAGTGTCTGACCTTGAGGCAGACCTTCAAAGATTTATCCACAAGAGAGATTATCTTTCTGAAAGATTGGAGACTCTGGTCAATGATCAGGAGAAGCTTTCAACAAAGGCAGCTGAATTTGAGCTTGAGAATGAAAAGCTGCAGAAGGAAGTTACTGATTTGCAAGAAAATGTAGCCAAGATGCATGGAAATGAGAATCAAATTCTCAGCATAGAAGCTGACTTAAGAAGATTACAGAGTTTGGTTACTGATGCCTTGGAGGTCTCTGGATCAAAGTATGAGTATTCTGGTGGTGGTAGTATTGAGTGCTTGGAAGGGTTACTGAATAAGCTTTTAGAGAGTTATGCAACTCTTTCCTCGGAAAAACCTGTGCATGGGGGTGCCGCTGAAAGTCTCCATACTGAATATGATGATGCAACAGTTATTGGATCGAGAAGCCTAAATACACTTGATTCCCAGGAATCAGATATAGATGTTTTAAAGAAAGAGTTGGAGGAGGCTCAACATGAACTTTTGGGTGTGAAGGAGGAGAGGGATGGATATCTAGAGAAGCAACAGTCTATGGCTAGTGAATTTGAAGCATTACATAACAAAGTGAATGAGTTGCAAGGGCTGCTTAATCAAGAGGAGCAGAAGTTAGCTTCTGTTAGAGAGAAGTTAAATGTTGCAGTCAGAAAAGGGAAGTCATTGGTACAACAGCGTGACAGTCTGAAACAAAGTATTGATGAGGTCAATTCTGAGGTCGAACGTTTGAGATCAGAGATCAAGATGGGGCAAGTCAAAATTGCAGAGTATGAACAAAACTTCAGGGATTTGTCTACTTTCCCTAGTAGGGTAGAAGCCTTAGAATCTGAGACATTGTTCTTGAGGAATTGTTTGAATGAAACTGAGCAGAATTTGCAGCACAAAGAAAATACTTTGAGCATGATTGTAAATATCTTAGACAACATTGATGTAGGAGGCGATTTTAACTCTCGTGATCCAGTTGTGAAGTTAGAACGAATTGGGAAAATGTGCTTTGATCTGCGCGCAGATGTAGCTTCTTCTGAGCAAGAGGCTAGGAAATCCAAAAGAGCAGCAGAGCTACTCCTCGCAGAACTGAACGAGGTTCAAGAGAGGAATGATGGTCTCCAAGAAGAGCTTGCAAAATCTGCTGATGAAATTTCTGTAGTCTCCAAGGAAAGGGATCTTGCTGAGGCTAGCAAACTTGAAGCTGTTTTAAGTCTTGAAAAGCTATCTACTGCTCACTCCGAGGAAAGAAAAAACCAATTTTCTGAATTTGCAGGACTGAAATCTGGTCTAGATCAACTCAAGAAGGGTTTCCATGATATTTGCAATTCATTGGTCGATATTTTTTACAACGACTTGGAATTTTTGAACAACCTGGAGTCTGGTATTGACTCATGTCTCAAATTAAATAGTGCAAATGTGGTTGATGTGCACCCCTTCACTGCAGCTGGTGGATTTCTAACGAGCAAATCAGATAAGGATAACTCTATTTCAATGAATTCTAGGTCAGACACCAATGCGCATGGACATTTTGGTGACAGTTTTGTCATCGAAACCTTTACATACATAACACATTATGTGCAAGATCTCATGACGGAGATTGGTGTGCTTAAAGAAAAATTAGATGAACACTCAATGTCTTTGCATGAAAAAACTAGCAGTGTACCCAGATTGGTGGCAATTGTTCGTGGAGAGATAACTTCCAAAAACGAGTCATTTGAAGCCTTGAGGAGAGACTTTTTGCAGATGGAAATGGTCAAAAAGGAAAAGGACAAGGAACTTGTTGTCTTGCATAGAAATGCTGCCGTGCTTTTTGAAGCATGCACTAGTTCAGCTGTGGAAATAAATAGAAGAAAAGATGAATTGATGGGAAATAGTTGGGCTGTTGGAGATCTGGGAATGACATCAAAAACAGCAGAATTGCCCGCTTTCAGGGGAGAGGGTGAGCTGTACTCTGAGGAATCTGTTAGGTCTGTGGCAGACTGGCTATTGTCGGCTGCTAGTGATTTTGCTACTCTGACAGCTGAAATAGTGGAAGGCAGCCAAAAGGAAATGAAGCTTACCATTTCAAATTTGCAGAAAGAGCTTCAGGAGAAGGACGTTCAAAAGGAGAGGATTTTCATGGAGCTTGTAAGTCAAATCAAGGAAGCTGAAGATACTGCAAGCAGCTATTCAGTGGACCTTGAATCTTCAAAAACCTTGGTGTATGATTTGGAGAAACAGTTGGAAGCGATGAAAGGTGAACGCAACCTACTTGAGCAGAGAGTAAAGGAGCTAGAAGATGGCCATGCCACCTCTGACGAGTTACAACAGAGGGTCAGAACACTAACTGATGAGCTTGCTGCCAAAGACCATGAAATTGAGGAGCTAATGCAAGCACTTGATGAGGAGGAGGTGCAGATGCAAGGTATCACCTACAAGATTAAGGAACTGGAAAAGATTGTGGAACAAAAGAACCTAGATTTAGAGAACCTTGAAGCTTCTCGTGGGAAGGTTATGAAAAAGCTCTCCATCACTGTGTATAAGTTTGACGAGCTGCATCGCCTATCTGCAAGCCTCCTTGCGGAAGTTGAAAAATTGCAGTCACAATTGCAAGATCGGGATGCAGAGATTTCTTTCTTAAGGCAGGAGGTCACTAGGTGCACCAATGATGTTCTGGTTGCATCACAAGTCAGTAAGAAGGGAAATTCAGATGAGATCCACGAGTTATTAACATGGTTTGATATGAATATTCCTGCATTTGGGGTCCACAGTGAGTATCTTGAAAATAAGAACAACAGTGACGTCCCTGAACAAAAGGAAGTACTCAAGAAGACAGTTGATTCAATTTTATCAGAATTGGGGGATCTACGGGCTGCGGCTCAAAGCAAAGATATATTGTTGCAAGAAGAAAGGACTAAAGTAGAAGAATTAACACGCAAGGAACAGACTCTTGAGAAGTGTTTACGGGAGAAGGAATCACGATTAAATCTGCTTGAAGGTGTGGAAGATGGCCAAGCAACTAGCTCGACCTCAGAGATTCATGAAGTTGAGCCTGCGATAAACAAATGGGAAGCATCTGGTTCCTCCATTGCATCTCAAGTCCGCAGTTTGCGCAAAGGCAACAGTGAGCAAGTTGCAATTGCCATAGATATGGATCCTGGGAGCACTAGTAGATTGGAAGATGAAGAAGATGATAAGGTTCATGGTTTCAAGTCACTCACTACATCAAGAATGGTTCCTAAATGTACAAGACCTGTGAGTAACATGGTCGATGGCCTCTGGTTCACATTTGGTTTTAGGGCGAGATGGACTTGGGGTCCCGATTATGTTATTATTGGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

2620

Amino Acids

294.23

Weight (kDa)

4.82

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HOOK	PF05622	2181 - 2392	5.7e-06	HOOK protein coiled-coil region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02080 AT5G15520 AT5G61170
fragaria_vesca	FvH4_5g14200 FvH4_6g47110 FvH4_6g47110
malus_domestica	MD06G1200400.v1.1 MD09G1064000.v1.1 MD14G1209900.v1.1 MD17G1057300.v1.1
prunus_persica	Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.5G203100_v2.0.a1
pyrus_communis	pycom06g17700 pycom111g05360 pycom14g17340
rosa_chinensis	RchiOBHm_Chr2g0166161 RchiOBHm_Chr7g0182731
rosa_laevigata	RLG00000005105 RLG00000021591
rosa_multiflora	Rmu_sc0003127.1_g000026 Rmu_sc0006218.1_g000031 Rmu_sc0024464.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085150 Rroxscaffold_3G00271030
rosa_rugosa	Rorug02G0520800 Rorug06G0449700
rosa_samantha	Rh2AG586900 Rh2BG598700 Rh2CG569400 Rh2DG608600 Rh7AG053500 Rh7BG053000 Rh7CG054600 Rh7DG052800
rosa_wichuraiana	Rw2G048930 Rw7G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1913
AasI	GACNNNNNNGTC	2 cut(s)	1399, 6080
AatII	GACGTC	1 cut(s)	7323
Acc16I	TGCGCA	2 cut(s)	6057, 7631
Acc36I	ACCTGC	3 cut(s)	811, 1630, 3493
AccB1I	GGYRCC	2 cut(s)	383, 4907
AccI	GTMKAC	3 cut(s)	2425, 3158, 5345
AccII	CGCG	1 cut(s)	5556
AciI	CCGC	8 cut(s)	1406, 1536, 3644, 4911, 6462, 7100, 7394, 7621
AclI	AACGTT	1 cut(s)	5275
AcoI	YGGCCR	5 cut(s)	40, 3093, 4086, 6820, 7528
AcyI	GRCGYC	2 cut(s)	384, 7320
AdeI	CACNNNGTG	1 cut(s)	7176
AfeI	AGCGCT	1 cut(s)	3319
AflII	CTTAAG	4 cut(s)	896, 1531, 4750, 7156
AflIII	ACRYGT	3 cut(s)	742, 3241, 4114
AhdI	GACNNNNNGTC	1 cut(s)	7833
AhlI	ACTAGT	5 cut(s)	221, 2705, 4100, 6362, 7685
AjnI	CCWGG	7 cut(s)	1290, 1479, 4088, 4190, 4983, 5910, 7675
Alw21I	GWGCWC	6 cut(s)	830, 1218, 2547, 5970, 7181, 7685
Alw44I	GTGCAC	2 cut(s)	5966, 7177
AlwNI	CAGNNNCTG	3 cut(s)	215, 3844, 3962
Ama87I	CYCGRG	1 cut(s)	584
Aor51HI	AGCGCT	1 cut(s)	3319
AoxI	GGCC	8 cut(s)	40, 554, 2499, 3093, 4086, 6820, 7528, 7792
ApaLI	GTGCAC	2 cut(s)	5966, 7177
ArsI	GACNNNNNNTTYG	2 cut(s)	3981, 4013
Asp700I	GAANNNNTTC	5 cut(s)	690, 999, 2787, 3654, 5846
AspLEI	GCGC	8 cut(s)	386, 2829, 3320, 4438, 5556, 5558, 6058, 7632
AspS9I	GGNCC	8 cut(s)	166, 599, 800, 933, 2551, 6715, 7282, 7835
AsuII	TTCGAA	1 cut(s)	3478
AsuNHI	GCTAGC	2 cut(s)	3314, 5726
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	8 cut(s)	166, 599, 800, 933, 2551, 6715, 7282, 7835
BaeGI	GKGCMC	3 cut(s)	1303, 5970, 7181
BalI	TGGCCA	3 cut(s)	4088, 6822, 7530
BamHI	GGATCC	1 cut(s)	7672
BanI	GGYRCC	2 cut(s)	383, 4907
BanII	GRGCYC	4 cut(s)	830, 1218, 2075, 2547
BarI	GAAGNNNNNNTAC	2 cut(s)	4954, 4986
BauI	CACGAG	3 cut(s)	5502, 7020, 7238
BbsI	GAAGAC	5 cut(s)	582, 3714, 4032, 4521, 7355
Bbv12I	GWGCWC	6 cut(s)	830, 1218, 2547, 5970, 7181, 7685
BbvCI	CCTCAGC	2 cut(s)	486, 5721
BceAI	ACGGC	4 cut(s)	3, 27, 3108, 6326
BcgI	CGANNNNNNTGC	4 cut(s)	2259, 2293, 7524, 7558
BciT130I	CCWGG	7 cut(s)	1292, 1481, 4090, 4192, 4985, 5912, 7677
BciVI	GTATCC	1 cut(s)	2401
BclI	TGATCA	1 cut(s)	4612
BcuI	ACTAGT	5 cut(s)	221, 2705, 4100, 6362, 7685
BfoI	RGCGCY	3 cut(s)	387, 2830, 3321
BfrI	CTTAAG	4 cut(s)	896, 1531, 4750, 7156
BfuAI	ACCTGC	3 cut(s)	811, 1630, 3493
BfuI	GTATCC	1 cut(s)	2401
BglII	AGATCT	4 cut(s)	2986, 4017, 6121, 6427
BlpI	GCTNAGC	1 cut(s)	2216
BmcAI	AGTACT	2 cut(s)	268, 7341
Bme1390I	CCNGG	7 cut(s)	1292, 1481, 4090, 4192, 4985, 5912, 7677
Bme18I	GGWCC	8 cut(s)	166, 599, 800, 933, 2551, 6715, 7282, 7835
BmeRI	GACNNNNNGTC	1 cut(s)	7833
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	8 cut(s)	166, 599, 800, 933, 2551, 6715, 7282, 7835
BmrFI	CCNGG	7 cut(s)	1292, 1481, 4090, 4192, 4985, 5912, 7677
BmrI	ACTGGG	1 cut(s)	2534
BmtI	GCTAGC	2 cut(s)	3318, 5730
BmuI	ACTGGG	1 cut(s)	2534
BoxI	GACNNNNGTC	3 cut(s)	222, 4604, 5931
BpiI	GAAGAC	5 cut(s)	582, 3714, 4032, 4521, 7355
BplI	GAGNNNNNCTC	2 cut(s)	6473, 6505
BpmI	CTGGAG	2 cut(s)	354, 5933
Bpu10I	CCTNAGC	5 cut(s)	285, 486, 2247, 2546, 5721
Bpu1102I	GCTNAGC	1 cut(s)	2216
Bpu14I	TTCGAA	1 cut(s)	3478
Bsa29I	ATCGAT	1 cut(s)	4407
BsaAI	YACGTR	1 cut(s)	4115
BsaBI	GATNNNNATC	5 cut(s)	732, 2736, 4128, 5067, 7671
BsaHI	GRCGYC	2 cut(s)	384, 7320
BsaI	GGTCTC	3 cut(s)	1373, 4795, 5660
BsaWI	WCCGGW	2 cut(s)	2225, 2851
BsaXI	ACNNNNNCTCC	8 cut(s)	1691, 1721, 5147, 5177, 6743, 6773, 7672, 7702
Bse118I	RCCGGY	1 cut(s)	4145
Bse3DI	GCAATG	5 cut(s)	425, 923, 2210, 3744, 7605
Bse8I	GATNNNNATC	5 cut(s)	732, 2736, 4128, 5067, 7671
BseBI	CCWGG	7 cut(s)	1292, 1481, 4090, 4192, 4985, 5912, 7677
BseCI	ATCGAT	1 cut(s)	4407
BseGI	GGATG	5 cut(s)	502, 643, 1414, 5068, 7144
BseJI	GATNNNNATC	5 cut(s)	732, 2736, 4128, 5067, 7671
BseMI	GCAATG	5 cut(s)	425, 923, 2210, 3744, 7605
BsePI	GCGCGC	1 cut(s)	5554
BseSI	GKGCMC	3 cut(s)	1303, 5970, 7181
BseYI	CCCAGC	2 cut(s)	928, 1937
BsgI	GTGCAG	5 cut(s)	651, 1195, 3521, 3797, 6953
Bsh1236I	CGCG	1 cut(s)	5556
BshFI	GGCC	8 cut(s)	42, 556, 2501, 3095, 4088, 6822, 7530, 7794
BshNI	GGYRCC	2 cut(s)	383, 4907
BshVI	ATCGAT	1 cut(s)	4407
BsiHKAI	GWGCWC	6 cut(s)	830, 1218, 2547, 5970, 7181, 7685
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	3 cut(s)	2226, 2852, 4146
BslFI	GGGAC	5 cut(s)	946, 1405, 3784, 7307, 7821
BsmBI	CGTCTC	1 cut(s)	165
BsmFI	GGGAC	5 cut(s)	946, 1405, 3784, 7307, 7821
BsmI	GAATGC	1 cut(s)	2270
BsnI	GGCC	8 cut(s)	42, 556, 2501, 3095, 4088, 6822, 7530, 7794
Bso31I	GGTCTC	3 cut(s)	1373, 4795, 5660
BsoBI	CYCGRG	1 cut(s)	584
Bsp119I	TTCGAA	1 cut(s)	3478
Bsp1286I	GDGCHC	8 cut(s)	830, 1218, 1303, 2075, 2547, 5970, 7181, 7685
Bsp1407I	TGTACA	3 cut(s)	2176, 4204, 7763
Bsp1720I	GCTNAGC	1 cut(s)	2216
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	8 cut(s)	1406, 1536, 3644, 4911, 6462, 7100, 7394, 7621
BspANI	GGCC	8 cut(s)	42, 556, 2501, 3095, 4088, 6822, 7530, 7794
BspDI	ATCGAT	1 cut(s)	4407
BspFNI	CGCG	1 cut(s)	5556
BspHI	TCATGA	5 cut(s)	1717, 1966, 2920, 6126, 7558
BspMAI	CTGCAG	6 cut(s)	211, 1774, 3372, 4461, 4671, 5983
BspMI	ACCTGC	3 cut(s)	811, 1630, 3493
BspOI	GCTAGC	2 cut(s)	3318, 5730
BspQI	GCTCTTC	3 cut(s)	8, 1155, 5658
BspT104I	TTCGAA	1 cut(s)	3478
BspT107I	GGYRCC	2 cut(s)	383, 4907
BspTI	CTTAAG	4 cut(s)	896, 1531, 4750, 7156
BspTNI	GGTCTC	3 cut(s)	1373, 4795, 5660
BsrDI	GCAATG	5 cut(s)	425, 923, 2210, 3744, 7605
BsrFI	RCCGGY	1 cut(s)	4145
BsrGI	TGTACA	3 cut(s)	2176, 4204, 7763
BssAI	RCCGGY	1 cut(s)	4145
BssHII	GCGCGC	1 cut(s)	5554
BssNI	GRCGYC	2 cut(s)	384, 7320
BssSI	CACGAG	3 cut(s)	5502, 7020, 7238
BssT1I	CCWWGG	7 cut(s)	94, 2502, 3352, 3756, 4782, 5703, 6735
Bst2BI	CACGAG	3 cut(s)	5502, 7020, 7238
Bst2UI	CCWGG	7 cut(s)	1292, 1481, 4090, 4192, 4985, 5912, 7677
Bst6I	CTCTTC	7 cut(s)	8, 873, 1113, 1155, 4008, 4130, 5658
BstACI	GRCGYC	2 cut(s)	384, 7320
BstAFI	CTTAAG	4 cut(s)	896, 1531, 4750, 7156
BstAPI	GCANNNNNTGC	3 cut(s)	5140, 5425, 5678
BstAUI	TGTACA	3 cut(s)	2176, 4204, 7763
BstBAI	YACGTR	1 cut(s)	4115
BstBI	TTCGAA	1 cut(s)	3478
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	5 cut(s)	502, 643, 1414, 5068, 7144
BstFNI	CGCG	1 cut(s)	5556
BstH2I	RGCGCY	3 cut(s)	387, 2830, 3321
BstHHI	GCGC	8 cut(s)	386, 2829, 3320, 4438, 5556, 5558, 6058, 7632
BstNI	CCWGG	7 cut(s)	1292, 1481, 4090, 4192, 4985, 5912, 7677
BstNSI	RCATGY	9 cut(s)	137, 395, 746, 2401, 2690, 3245, 3416, 4369, 6360
BstPAI	GACNNNNGTC	3 cut(s)	222, 4604, 5931
BstSCI	CCNGG	7 cut(s)	1290, 1479, 4088, 4190, 4983, 5910, 7675
BstSLI	GKGCMC	3 cut(s)	1303, 5970, 7181
BstUI	CGCG	1 cut(s)	5556
BstV2I	GAAGAC	5 cut(s)	582, 3714, 4032, 4521, 7355
BstXI	CCANNNNNNTGG	2 cut(s)	6211, 7669
Bsu15I	ATCGAT	1 cut(s)	4407
BsuI	GTATCC	1 cut(s)	2401
BsuRI	GGCC	8 cut(s)	42, 556, 2501, 3095, 4088, 6822, 7530, 7794
BsuTUI	ATCGAT	1 cut(s)	4407
BtgI	CCRYGG	1 cut(s)	94
BtgZI	GCGATG	3 cut(s)	3081, 6782, 7061
BtsCI	GGATG	5 cut(s)	502, 643, 1414, 5068, 7144
BtsI	GCAGTG	5 cut(s)	91, 639, 4500, 5976, 6202
BveI	ACCTGC	3 cut(s)	811, 1630, 3493
CaiI	CAGNNNCTG	3 cut(s)	215, 3844, 3962
CciI	TCATGA	5 cut(s)	1717, 1966, 2920, 6126, 7558
CfoI	GCGC	8 cut(s)	386, 2829, 3320, 4438, 5556, 5558, 6058, 7632
Cfr10I	RCCGGY	1 cut(s)	4145
Cfr13I	GGNCC	8 cut(s)	166, 599, 800, 933, 2551, 6715, 7282, 7835
ClaI	ATCGAT	1 cut(s)	4407
CsiI	ACCWGGT	1 cut(s)	1479
DinI	GGCGCC	1 cut(s)	385
DraI	TTTAAA	1 cut(s)	5007
DraIII	CACNNNGTG	1 cut(s)	7176
DrdI	GACNNNNNNGTC	2 cut(s)	1399, 6080
DriI	GACNNNNNGTC	1 cut(s)	7833
DseDI	GACNNNNNNGTC	2 cut(s)	1399, 6080
EaeI	YGGCCR	5 cut(s)	40, 3093, 4086, 6820, 7528
Eam1104I	CTCTTC	7 cut(s)	8, 873, 1113, 1155, 4008, 4130, 5658
Eam1105I	GACNNNNNGTC	1 cut(s)	7833
EarI	CTCTTC	7 cut(s)	8, 873, 1113, 1155, 4008, 4130, 5658
EciI	GGCGGA	1 cut(s)	3659
Ecl136II	GAGCTC	3 cut(s)	828, 1216, 2545
Eco130I	CCWWGG	7 cut(s)	94, 2502, 3352, 3756, 4782, 5703, 6735
Eco147I	AGGCCT	2 cut(s)	556, 2501
Eco24I	GRGCYC	4 cut(s)	830, 1218, 2075, 2547
Eco31I	GGTCTC	3 cut(s)	1373, 4795, 5660
Eco32I	GATATC	3 cut(s)	550, 4234, 5069
Eco47I	GGWCC	8 cut(s)	166, 599, 800, 933, 2551, 6715, 7282, 7835
Eco47III	AGCGCT	1 cut(s)	3319
Eco53kI	GAGCTC	3 cut(s)	828, 1216, 2545
Eco88I	CYCGRG	1 cut(s)	584
EcoICRI	GAGCTC	3 cut(s)	828, 1216, 2545
EcoO109I	RGGNCCY	3 cut(s)	800, 2551, 7835
EcoRI	GAATTC	3 cut(s)	349, 2836, 6034
EcoRII	CCWGG	7 cut(s)	1290, 1479, 4088, 4190, 4983, 5910, 7675
EcoRV	GATATC	3 cut(s)	550, 4234, 5069
EcoT14I	CCWWGG	7 cut(s)	94, 2502, 3352, 3756, 4782, 5703, 6735
EcoT22I	ATGCAT	1 cut(s)	4713
EcoT38I	GRGCYC	4 cut(s)	830, 1218, 2075, 2547
EgeI	GGCGCC	1 cut(s)	385
EheI	GGCGCC	1 cut(s)	385
ErhI	CCWWGG	7 cut(s)	94, 2502, 3352, 3756, 4782, 5703, 6735
Esp3I	CGTCTC	1 cut(s)	165
FaqI	GGGAC	5 cut(s)	946, 1405, 3784, 7307, 7821
FauI	CCCGC	2 cut(s)	1529, 6469
FbaI	TGATCA	1 cut(s)	4612
FblI	GTMKAC	3 cut(s)	2425, 3158, 5345
FokI	GGATG	5 cut(s)	509, 650, 1421, 5075, 7151
FriOI	GRGCYC	4 cut(s)	830, 1218, 2075, 2547
FspAI	RTGCGCAY	1 cut(s)	6057
FspI	TGCGCA	2 cut(s)	6057, 7631
GlaI	GCGC	8 cut(s)	385, 2828, 3319, 4437, 5555, 5557, 6057, 7631
GsaI	CCCAGC	2 cut(s)	932, 1941
GsuI	CTGGAG	2 cut(s)	354, 5933
HaeII	RGCGCY	3 cut(s)	387, 2830, 3321
HaeIII	GGCC	8 cut(s)	42, 556, 2501, 3095, 4088, 6822, 7530, 7794
HapII	CCGG	3 cut(s)	2226, 2852, 4146
HhaI	GCGC	8 cut(s)	386, 2829, 3320, 4438, 5556, 5558, 6058, 7632
Hin1I	GRCGYC	2 cut(s)	384, 7320
Hin6I	GCGC	8 cut(s)	384, 2827, 3318, 4436, 5554, 5556, 6056, 7630
HinP1I	GCGC	8 cut(s)	384, 2827, 3318, 4436, 5554, 5556, 6056, 7630
HincII	GTYRAC	5 cut(s)	1326, 1804, 3286, 4278, 4474
HindII	GTYRAC	5 cut(s)	1326, 1804, 3286, 4278, 4474
HpaI	GTTAAC	2 cut(s)	3286, 4474
HpaII	CCGG	3 cut(s)	2226, 2852, 4146
HpyCH4IV	ACGT	6 cut(s)	1777, 2664, 4114, 5275, 6636, 7320
HpySE526I	ACGT	6 cut(s)	1777, 2664, 4114, 5275, 6636, 7320
Hsp92I	GRCGYC	2 cut(s)	384, 7320
HspAI	GCGC	8 cut(s)	384, 2827, 3318, 4436, 5554, 5556, 6056, 7630
KasI	GGCGCC	1 cut(s)	383
KflI	GGGWCCC	1 cut(s)	7835
Ksp22I	TGATCA	1 cut(s)	4612
KspAI	GTTAAC	2 cut(s)	3286, 4474
LguI	GCTCTTC	3 cut(s)	8, 1155, 5658
MabI	ACCWGGT	1 cut(s)	1479
MaeII	ACGT	6 cut(s)	1777, 2664, 4114, 5275, 6636, 7320
MfeI	CAATTG	5 cut(s)	1272, 2711, 6216, 7124, 7656
MhlI	GDGCHC	8 cut(s)	830, 1218, 1303, 2075, 2547, 5970, 7181, 7685
MlsI	TGGCCA	3 cut(s)	4088, 6822, 7530
MluNI	TGGCCA	3 cut(s)	4088, 6822, 7530
Mly113I	GGCGCC	1 cut(s)	384
MmeI	TCCRAC	6 cut(s)	700, 2760, 4278, 4998, 6403, 6741
Mox20I	TGGCCA	3 cut(s)	4088, 6822, 7530
Mph1103I	ATGCAT	1 cut(s)	4713
MroXI	GAANNNNTTC	5 cut(s)	690, 999, 2787, 3654, 5846
MscI	TGGCCA	3 cut(s)	4088, 6822, 7530
Msp20I	TGGCCA	3 cut(s)	4088, 6822, 7530
MspA1I	CMGCKG	8 cut(s)	656, 1406, 1656, 4640, 4913, 5984, 6371, 6560
MspCI	CTTAAG	4 cut(s)	896, 1531, 4750, 7156
MspI	CCGG	3 cut(s)	2226, 2852, 4146
MspR9I	CCNGG	7 cut(s)	1292, 1481, 4090, 4192, 4985, 5912, 7677
MunI	CAATTG	5 cut(s)	1272, 2711, 6216, 7124, 7656
Mva1269I	GAATGC	1 cut(s)	2270
MvaI	CCWGG	7 cut(s)	1292, 1481, 4090, 4192, 4985, 5912, 7677
MvnI	CGCG	1 cut(s)	5556
NarI	GGCGCC	1 cut(s)	384
NcoI	CCATGG	1 cut(s)	94
NheI	GCTAGC	2 cut(s)	3314, 5726
NsbI	TGCGCA	2 cut(s)	6057, 7631
NsiI	ATGCAT	1 cut(s)	4713
NspI	RCATGY	9 cut(s)	137, 395, 746, 2401, 2690, 3245, 3416, 4369, 6360
NspV	TTCGAA	1 cut(s)	3478
PaeI	GCATGC	2 cut(s)	137, 6360
PaeR7I	CTCGAG	1 cut(s)	584
PagI	TCATGA	5 cut(s)	1717, 1966, 2920, 6126, 7558
PauI	GCGCGC	1 cut(s)	5554
PceI	AGGCCT	2 cut(s)	556, 2501
PciI	ACATGT	2 cut(s)	742, 3241
PciSI	GCTCTTC	3 cut(s)	8, 1155, 5658
PctI	GAATGC	1 cut(s)	2270
PdmI	GAANNNNTTC	5 cut(s)	690, 999, 2787, 3654, 5846
PfoI	TCCNGGA	1 cut(s)	4190
PluTI	GGCGCC	1 cut(s)	387
Ppu21I	YACGTR	1 cut(s)	4115
PpuMI	RGGWCCY	3 cut(s)	800, 2551, 7835
PscI	ACATGT	2 cut(s)	742, 3241
PshAI	GACNNNNGTC	3 cut(s)	222, 4604, 5931
PsiI	TTATAA	1 cut(s)	1913
Psp124BI	GAGCTC	3 cut(s)	830, 1218, 2547
Psp1406I	AACGTT	1 cut(s)	5275
Psp5II	RGGWCCY	3 cut(s)	800, 2551, 7835
Psp6I	CCWGG	7 cut(s)	1290, 1479, 4088, 4190, 4983, 5910, 7675
PspFI	CCCAGC	2 cut(s)	928, 1937
PspGI	CCWGG	7 cut(s)	1290, 1479, 4088, 4190, 4983, 5910, 7675
PspPI	GGNCC	8 cut(s)	166, 599, 800, 933, 2551, 6715, 7282, 7835
PspPPI	RGGWCCY	3 cut(s)	800, 2551, 7835
PsrI	GAACNNNNNNTAC	2 cut(s)	6771, 6803
PstI	CTGCAG	6 cut(s)	211, 1774, 3372, 4461, 4671, 5983
PstNI	CAGNNNCTG	3 cut(s)	215, 3844, 3962
PteI	GCGCGC	1 cut(s)	5554
PvuII	CAGCTG	6 cut(s)	656, 1656, 4640, 5984, 6371, 6560
SacI	GAGCTC	3 cut(s)	830, 1218, 2547
SapI	GCTCTTC	3 cut(s)	8, 1155, 5658
Sau96I	GGNCC	8 cut(s)	166, 599, 800, 933, 2551, 6715, 7282, 7835
ScaI	AGTACT	2 cut(s)	268, 7341
ScrFI	CCNGG	7 cut(s)	1292, 1481, 4090, 4192, 4985, 5912, 7677
SduI	GDGCHC	8 cut(s)	830, 1218, 1303, 2075, 2547, 5970, 7181, 7685
SexAI	ACCWGGT	1 cut(s)	1479
SfoI	GGCGCC	1 cut(s)	385
Sfr274I	CTCGAG	1 cut(s)	584
SfuI	TTCGAA	1 cut(s)	3478
SinI	GGWCC	8 cut(s)	166, 599, 800, 933, 2551, 6715, 7282, 7835
SlaI	CTCGAG	1 cut(s)	584
SpeI	ACTAGT	5 cut(s)	221, 2705, 4100, 6362, 7685
SphI	GCATGC	2 cut(s)	137, 6360
SseBI	AGGCCT	2 cut(s)	556, 2501
SsiI	CCGC	8 cut(s)	1406, 1536, 3644, 4911, 6462, 7100, 7394, 7621
SspDI	GGCGCC	1 cut(s)	383
SspI	AATATT	3 cut(s)	445, 2513, 7267
SstI	GAGCTC	3 cut(s)	830, 1218, 2547
StuI	AGGCCT	2 cut(s)	556, 2501
StyD4I	CCNGG	7 cut(s)	1290, 1479, 4088, 4190, 4983, 5910, 7675
StyI	CCWWGG	7 cut(s)	94, 2502, 3352, 3756, 4782, 5703, 6735
TaiI	ACGT	6 cut(s)	1780, 2667, 4117, 5278, 6639, 7323
TauI	GCSGC	2 cut(s)	4913, 7397
TspGWI	ACGGA	3 cut(s)	158, 189, 6146
Vha464I	CTTAAG	4 cut(s)	896, 1531, 4750, 7156
VneI	GTGCAC	2 cut(s)	5966, 7177
VpaK11BI	GGWCC	8 cut(s)	166, 599, 800, 933, 2551, 6715, 7282, 7835
XbaI	TCTAGA	4 cut(s)	1265, 3208, 5071, 5827
XceI	RCATGY	9 cut(s)	137, 395, 746, 2401, 2690, 3245, 3416, 4369, 6360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	7189
XhoI	CTCGAG	1 cut(s)	584
XmiI	GTMKAC	3 cut(s)	2425, 3158, 5345
XmnI	GAANNNNTTC	5 cut(s)	690, 999, 2787, 3654, 5846
ZraI	GACGTC	1 cut(s)	7321
ZrmI	AGTACT	2 cut(s)	268, 7341
Zsp2I	ATGCAT	1 cut(s)	4713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.