Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002976

Physical Location & Seq

Genomic Coordinates Forward (+)

8013357 .. 8015339

Gene Structure 1983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g14200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGACGGCTAACAAAGTCAAAGACGTGTCCCCTCATGAGTTCGTCAAGGCCTACGCCGCTCATCTTAAGCGATCCGGCAAGATTGAGCTCCCTGAGTGGACTGACATCGTGAAGACTGCTACATTTAAGGAGCTGGCTCCTTATGACCCTGATTGGTACTTCATCAGAGCTGCATCTATGGCAAGGAAAATCTACTTGAGGGGTGGTCTTGGTGTTGGTGCCTTCCGTAGGATCTATGGAGGAAGCAAGAGGAATGGTAGTCGTCCACCGCATTTCTGTAAGAGCAGTGGTGGTATTGCTCGTCACATTCTTCAGCAATTAGAGCAGTTGAAGATTGTTGAGATTGACCCCAAGGGTGGAAGGAAAATCACACCCAGCGGTCAGCGGGATTTGGACCAAGTTGCTGGACGGATCGTTGTTGCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016020 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

144

Amino Acids

15.89

Weight (kDa)

10.09

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19e	PF01090	6 - 140	6.3e-58	Ribosomal protein S19e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02080 AT5G15520 AT5G61170
fragaria_vesca	FvH4_5g14200 FvH4_6g47110 FvH4_6g47110
malus_domestica	MD06G1200400.v1.1 MD09G1064000.v1.1 MD14G1209900.v1.1 MD17G1057300.v1.1
prunus_persica	Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.5G203100_v2.0.a1
pyrus_communis	pycom06g17700 pycom111g05360 pycom14g17340
rosa_chinensis	RchiOBHm_Chr2g0166161 RchiOBHm_Chr7g0182731
rosa_laevigata	RLG00000005105 RLG00000021591
rosa_multiflora	Rmu_sc0003127.1_g000026 Rmu_sc0006218.1_g000031 Rmu_sc0024464.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085150 Rroxscaffold_3G00271030
rosa_rugosa	Rorug02G0520800 Rorug06G0449700
rosa_samantha	Rh2AG586900 Rh2BG598700 Rh2CG569400 Rh2DG608600 Rh7AG053500 Rh7BG053000 Rh7CG054600 Rh7DG052800
rosa_wichuraiana	Rw2G048930 Rw7G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	4 cut(s)	60, 272, 381, 388
AclWI	GGATC	3 cut(s)	69, 242, 422
AcuI	CTGAAG	1 cut(s)	299
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	231, 359
AflII	CTTAAG	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	334
AjiI	CACGTC	1 cut(s)	28
AluBI	AGCT	3 cut(s)	91, 136, 173
AluI	AGCT	3 cut(s)	91, 136, 173
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	3 cut(s)	69, 242, 422
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	397
AvaII	GGWCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	122
Bbv12I	GWGCWC	1 cut(s)	93
BbvI	GCAGC	1 cut(s)	160
BceAI	ACGGC	1 cut(s)	24
BfrI	CTTAAG	1 cut(s)	68
BisI	GCNGC	2 cut(s)	60, 174
BlsI	GCNGC	2 cut(s)	61, 175
Bme18I	GGWCC	1 cut(s)	397
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	2 cut(s)	141, 223
BmsI	GCATC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 359
BseDI	CCNNGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	2 cut(s)	231, 359
BseMII	CTCAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	160
BseYI	CCCAGC	1 cut(s)	377
BshFI	GGCC	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	221
BsiHKAI	GWGCWC	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	231, 359
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	93
Bsp143I	GATC	3 cut(s)	74, 234, 414
BspACI	CCGC	4 cut(s)	60, 272, 381, 388
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	88
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	2 cut(s)	141, 223
BspPI	GGATC	3 cut(s)	69, 242, 422
BspT107I	GGYRCC	1 cut(s)	221
BspTI	CTTAAG	1 cut(s)	68
BsrBI	CCGCTC	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	3 cut(s)	74, 234, 414
BssT1I	CCWWGG	1 cut(s)	354
BstAFI	CTTAAG	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	96
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstKTI	GATC	3 cut(s)	77, 237, 417
BstMBI	GATC	3 cut(s)	74, 234, 414
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 182, 325
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	234
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	53
BtrI	CACGTC	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	138
CciI	TCATGA	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	397
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	6 cut(s)	11, 53, 91, 136, 140, 173
CviKI_1	RGCY	6 cut(s)	11, 53, 91, 136, 140, 173
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	3 cut(s)	76, 236, 416
DpnII	GATC	3 cut(s)	74, 234, 414
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	354
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	41
FaiI	YATR	4 cut(s)	39, 147, 182, 240
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	1 cut(s)	37
FauI	CCCGC	1 cut(s)	381
Fnu4HI	GCNGC	2 cut(s)	60, 174
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	2 cut(s)	60, 174
GluI	GCNGC	2 cut(s)	60, 174
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	1 cut(s)	41
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	102, 269
Hpy188I	TCNGA	2 cut(s)	170, 431
Hpy188III	TCNNGA	2 cut(s)	38, 112
Hpy8I	GTNNAC	2 cut(s)	102, 269
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	235, 357
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 182, 325
HpyF3I	CTNAG	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	41
Kzo9I	GATC	3 cut(s)	74, 234, 414
LmnI	GCTCC	3 cut(s)	96, 133, 145
LpnPI	CCDG	6 cut(s)	91, 108, 122, 165, 391, 393
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	1 cut(s)	185
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	3 cut(s)	76, 236, 416
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	3 cut(s)	74, 234, 414
MboII	GAAGA	3 cut(s)	127, 305, 346
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	320
MnlI	CCTC	4 cut(s)	45, 195, 236, 246
MseI	TTAA	2 cut(s)	69, 129
MspA1I	CMGCKG	2 cut(s)	381, 388
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	59, 182, 325
NdeII	GATC	3 cut(s)	74, 234, 414
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	2 cut(s)	141, 223
NmuCI	GTSAC	1 cut(s)	305
PagI	TCATGA	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	61, 175
Psp124BI	GAGCTC	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	377
PspN4I	GGNNCC	2 cut(s)	141, 223
PspPI	GGNCC	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	234
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	2 cut(s)	69, 129
SatI	GCNGC	2 cut(s)	60, 174
Sau3AI	GATC	3 cut(s)	74, 234, 414
Sau96I	GGNCC	1 cut(s)	397
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	4 cut(s)	30, 93, 138, 175
SfaNI	GCATC	1 cut(s)	185
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	2 cut(s)	68, 199
SmoI	CTYRAG	2 cut(s)	68, 199
Sse9I	AATT	1 cut(s)	320
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	4 cut(s)	60, 272, 381, 388
SstI	GAGCTC	1 cut(s)	93
StuI	AGGCCT	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	1 cut(s)	30
TasI	AATT	1 cut(s)	320
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	2 cut(s)	69, 129
Tru9I	TTAA	2 cut(s)	69, 129
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	154
TspGWI	ACGGA	2 cut(s)	218, 427
TspRI	CASTG	1 cut(s)	295
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	397
XagI	CCTNNNNNAGG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.