Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002976

Physical Location & Seq

Genomic Coordinates Reverse (-)

21610811 .. 21612504

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g17700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGGCGGCGAGAACAGTGAAGGACGTGTCCCCCCATGAATTCGTCAAGGGCTACGCCGCTCACCTGAAGCGCTCCGGCCGAATTGAGCTTCCTGACTGGACCGACATTGTGAAGACCGCTACATTCAAGGAGCTTGCACCGTACGACCCTGATTGGTACTACATCAGATCTGCATCCATGGCAAGGAAAATCTACTTGAGGGGTGGTCTTGGTGTAGGTGCCTTCCGTAGGATTTATGGAGGAAGCAAGAGGAATGGCAGTCGCCCGCCTCATTTCTGTAAAAGCAGTGGCGCTATTGCTCGTCACATTCTTCAACAATTGCAGAGGATAAACATCATTGACGTTGACGCCAAAGGTGGAAGGAAAATCTCATCTAGTGGCCAGAGGGATCTCGACCAAGTTGCTGGACGGATCGCTGTCGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006996 GO:0008150 GO:0009987 GO:0015935 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

144

Amino Acids

15.9

Weight (kDa)

10.2

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02080 AT5G15520 AT5G61170
fragaria_vesca	FvH4_5g14200 FvH4_6g47110 FvH4_6g47110
malus_domestica	MD06G1200400.v1.1 MD09G1064000.v1.1 MD14G1209900.v1.1 MD17G1057300.v1.1
prunus_persica	Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.5G203100_v2.0.a1
pyrus_communis	pycom06g17700 pycom111g05360 pycom14g17340
rosa_chinensis	RchiOBHm_Chr2g0166161 RchiOBHm_Chr7g0182731
rosa_laevigata	RLG00000005105 RLG00000021591
rosa_multiflora	Rmu_sc0003127.1_g000026 Rmu_sc0006218.1_g000031 Rmu_sc0024464.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085150 Rroxscaffold_3G00271030
rosa_rugosa	Rorug02G0520800 Rorug06G0449700
rosa_samantha	Rh2AG586900 Rh2BG598700 Rh2CG569400 Rh2DG608600 Rh7AG053500 Rh7BG053000 Rh7CG054600 Rh7DG052800
rosa_wichuraiana	Rw2G048930 Rw7G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccBSI	CCGCTC	1 cut(s)	62
AciI	CCGC	4 cut(s)	8, 60, 120, 269
AclWI	GGATC	2 cut(s)	399, 422
AcoI	YGGCCR	2 cut(s)	79, 382
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	351
AfaI	GTAC	2 cut(s)	146, 161
AfeI	AGCGCT	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	186, 231
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	2 cut(s)	130, 317
AjiI	CACGTC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	91, 136
AluI	AGCT	2 cut(s)	91, 136
AlwI	GGATC	2 cut(s)	399, 422
Aor51HI	AGCGCT	1 cut(s)	74
AoxI	GGCC	2 cut(s)	79, 382
ApoI	RAATTY	1 cut(s)	41
AspLEI	GCGC	2 cut(s)	75, 296
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	122
BcgI	CGANNNNNNTGC	2 cut(s)	386, 420
BfaI	CTAG	1 cut(s)	378
BfoI	RGCGCY	2 cut(s)	76, 297
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	2 cut(s)	9, 60
BlsI	GCNGC	2 cut(s)	10, 61
Bme18I	GGWCC	1 cut(s)	102
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	223
BmsI	GCATC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	220
BsaBI	GATNNNNATC	2 cut(s)	175, 335
BsaHI	GRCGYC	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 231
Bse1I	ACTGG	1 cut(s)	104
Bse8I	GATNNNNATC	2 cut(s)	175, 335
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	176
BseJI	GATNNNNATC	2 cut(s)	175, 335
BseLI	CCNNNNNNNGG	2 cut(s)	186, 231
BseNI	ACTGG	1 cut(s)	104
BseX3I	CGGCCG	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	2 cut(s)	81, 384
BshNI	GGYRCC	1 cut(s)	221
BsiEI	CGRYCG	1 cut(s)	82
BsiSI	CCGG	1 cut(s)	78
BsiWI	CGTACG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	186, 231
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	81, 384
Bsp143I	GATC	3 cut(s)	170, 391, 414
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	4 cut(s)	8, 60, 120, 269
BspANI	GGCC	2 cut(s)	81, 384
BspLI	GGNNCC	1 cut(s)	223
BspPI	GGATC	2 cut(s)	399, 422
BspT107I	GGYRCC	1 cut(s)	221
BsrBI	CCGCTC	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	170, 391, 414
BssNI	GRCGYC	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	180
Bst4CI	ACNGT	2 cut(s)	19, 144
BstACI	GRCGYC	1 cut(s)	351
BstC8I	GCNNGC	2 cut(s)	138, 269
BstDSI	CCRYGG	1 cut(s)	180
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	176
BstH2I	RGCGCY	2 cut(s)	76, 297
BstHHI	GCGC	2 cut(s)	75, 296
BstKTI	GATC	3 cut(s)	173, 394, 417
BstMBI	GATC	3 cut(s)	170, 391, 414
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	2 cut(s)	170, 391
BstXI	CCANNNNNNTGG	1 cut(s)	407
BstYI	RGATCY	2 cut(s)	170, 391
BstZI	CGGCCG	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	81, 384
BtgI	CCRYGG	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	176
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	24, 295
Cac8I	GCNNGC	2 cut(s)	138, 269
CfoI	GCGC	2 cut(s)	75, 296
Cfr13I	GGNCC	1 cut(s)	102
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	145, 160
CviAII	CATG	2 cut(s)	38, 181
CviJI	RGCY	5 cut(s)	54, 81, 91, 136, 384
CviKI_1	RGCY	5 cut(s)	54, 81, 91, 136, 384
CviQI	GTAC	2 cut(s)	145, 160
DpnI	GATC	3 cut(s)	172, 393, 416
DpnII	GATC	3 cut(s)	170, 391, 414
EaeI	YGGCCR	2 cut(s)	79, 382
EagI	CGGCCG	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	102
Eco47III	AGCGCT	1 cut(s)	74
Eco52I	CGGCCG	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	41, 184
FaiI	YATR	3 cut(s)	39, 182, 240
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	2 cut(s)	37, 180
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	9, 60
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	2 cut(s)	9, 60
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	2 cut(s)	74, 295
GluI	GCNGC	2 cut(s)	9, 60
HaeII	RGCGCY	2 cut(s)	76, 297
HaeIII	GGCC	2 cut(s)	81, 384
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	2 cut(s)	75, 296
Hin1I	GRCGYC	1 cut(s)	351
Hin1II	CATG	2 cut(s)	41, 184
Hin6I	GCGC	2 cut(s)	73, 294
HinP1I	GCGC	2 cut(s)	73, 294
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	95, 395
Hpy8I	GTNNAC	1 cut(s)	349
HpyAV	CCTTC	3 cut(s)	16, 235, 357
HpyCH4III	ACNGT	2 cut(s)	19, 144
HpyCH4IV	ACGT	2 cut(s)	27, 345
HpyCH4V	TGCA	3 cut(s)	140, 176, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpySE526I	ACGT	2 cut(s)	27, 345
Hsp92I	GRCGYC	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	41, 184
HspAI	GCGC	2 cut(s)	73, 294
Kzo9I	GATC	3 cut(s)	170, 391, 414
LmnI	GCTCC	2 cut(s)	80, 133
LpnPI	CCDG	7 cut(s)	80, 85, 91, 108, 165, 393, 398
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	2 cut(s)	27, 345
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	3 cut(s)	172, 393, 416
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	3 cut(s)	170, 391, 414
MboII	GAAGA	2 cut(s)	127, 305
MfeI	CAATTG	1 cut(s)	320
MflI	RGATCY	2 cut(s)	170, 391
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	3 cut(s)	41, 84, 320
MluNI	TGGCCA	1 cut(s)	384
MnlI	CCTC	6 cut(s)	195, 236, 246, 282, 321, 381
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
Msp20I	TGGCCA	1 cut(s)	384
MspI	CCGG	1 cut(s)	78
MunI	CAATTG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	182
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	170, 391, 414
NlaIII	CATG	2 cut(s)	41, 184
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	305
Pfl23II	CGTACG	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	10, 61
PspLI	CGTACG	1 cut(s)	144
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	170, 391
RsaI	GTAC	2 cut(s)	146, 161
RsaNI	GTAC	2 cut(s)	145, 160
SatI	GCNGC	2 cut(s)	9, 60
Sau3AI	GATC	3 cut(s)	170, 391, 414
Sau96I	GGNCC	1 cut(s)	102
SetI	ASST	7 cut(s)	30, 69, 93, 138, 223, 348, 361
SfaNI	GCATC	1 cut(s)	185
SinI	GGWCC	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	3 cut(s)	41, 84, 320
SsiI	CCGC	4 cut(s)	8, 60, 120, 269
SspMI	CTAG	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	2 cut(s)	19, 144
TaiI	ACGT	2 cut(s)	30, 348
TaqI	TCGA	1 cut(s)	396
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	41, 84, 320
TauI	GCSGC	2 cut(s)	11, 62
TscAI	CASTG	2 cut(s)	24, 295
TseFI	GTSAC	1 cut(s)	305
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	54
TspGWI	ACGGA	2 cut(s)	218, 427
TspRI	CASTG	2 cut(s)	24, 295
VpaK11BI	GGWCC	1 cut(s)	102
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	41
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.