Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002976

Physical Location & Seq

Genomic Coordinates Reverse (-)

4391534 .. 4393377

Gene Structure 1844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1064000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGACTGCGAAAACTGTGAAGGATGTCTCCCCTCACGAATTTGTTAAGGCTTACGCCGCCCATCTGAAGCGATCTGGCAAGGTTGAGCTTCCTCCATGGACTGATATCGTTAAGACCGCAAGATTCAAGGAGTTGGCTCCTTATGATCCTGACTGGTACTATGTCAGAGCTGCCTCCATGGCAAGGAAGATCTACTTGAGGGGAGGACTCGGTGTTGGTGCCTTCCGCAGGATTTATGGTGGAAGCCAGAGGAATGGAAGTCGTCCGCCACATTTCTGCGAGAGCAGTGGTGCTATTGCCCGACACATTCTCCAACAGTTACAGAAAATGAACATCGTTGATGTTGACCCAAAGGGAGGGAGGAAAATCACATCTAACGGTCAACGCGATCTTGACCAAGTTGCCGGACGAATTGTGATTACACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006996 GO:0008150 GO:0009506 GO:0009987 GO:0015935 GO:0016043 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0032991 GO:0034622 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0065003 GO:0070925 GO:0071826 GO:0071840 GO:0071944 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S19e

Protein Analysis

144

Amino Acids

15.92

Weight (kDa)

10.14

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19e	PF01090	6 - 140	8.2e-57	Ribosomal protein S19e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02080 AT5G15520 AT5G61170
fragaria_vesca	FvH4_5g14200 FvH4_6g47110 FvH4_6g47110
malus_domestica	MD06G1200400.v1.1 MD09G1064000.v1.1 MD14G1209900.v1.1 MD17G1057300.v1.1
prunus_persica	Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.3G257000_v2.0.a1 Prupe.5G203100_v2.0.a1
pyrus_communis	pycom06g17700 pycom111g05360 pycom14g17340
rosa_chinensis	RchiOBHm_Chr2g0166161 RchiOBHm_Chr7g0182731
rosa_laevigata	RLG00000005105 RLG00000021591
rosa_multiflora	Rmu_sc0003127.1_g000026 Rmu_sc0006218.1_g000031 Rmu_sc0024464.1_g000004
rosa_roxburghii	Rroxscaffold_2G00085150 Rroxscaffold_3G00271030
rosa_rugosa	Rorug02G0520800 Rorug06G0449700
rosa_samantha	Rh2AG586900 Rh2BG598700 Rh2CG569400 Rh2DG608600 Rh7AG053500 Rh7BG053000 Rh7CG054600 Rh7DG052800
rosa_wichuraiana	Rw2G048930 Rw7G004350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AccII	CGCG	1 cut(s)	390
AciI	CCGC	4 cut(s)	60, 120, 229, 269
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	41
AcuI	CTGAAG	1 cut(s)	89
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	186, 231, 359
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	2 cut(s)	91, 173
AluI	AGCT	2 cut(s)	91, 173
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	34
BglI	GCCNNNNNGGC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	192
BisI	GCNGC	2 cut(s)	60, 174
BlsI	GCNGC	2 cut(s)	61, 175
BmiI	GGNNCC	2 cut(s)	141, 223
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	98, 180
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 231, 359
Bse1I	ACTGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	98, 180
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	3 cut(s)	186, 231, 359
BseNI	ACTGG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	390
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	408
BslI	CCNNNNNNNGG	3 cut(s)	186, 231, 359
BsmAI	GTCTC	1 cut(s)	34
Bsp143I	GATC	4 cut(s)	74, 148, 192, 391
Bsp19I	CCATGG	2 cut(s)	98, 180
BspACI	CCGC	4 cut(s)	60, 120, 229, 269
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	2 cut(s)	141, 223
BspPI	GGATC	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	98, 180
BssMI	GATC	4 cut(s)	74, 148, 192, 391
BssT1I	CCWWGG	2 cut(s)	98, 180
Bst4CI	ACNGT	3 cut(s)	19, 321, 383
BstDSI	CCRYGG	2 cut(s)	98, 180
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	390
BstKTI	GATC	4 cut(s)	77, 151, 195, 394
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	4 cut(s)	74, 148, 192, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 182
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	192
BtgI	CCRYGG	2 cut(s)	98, 180
BtsCI	GGATG	1 cut(s)	31
BtsI	GCAGTG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	295
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	3 cut(s)	99, 181, 429
CviJI	RGCY	5 cut(s)	53, 91, 140, 173, 249
CviKI_1	RGCY	5 cut(s)	53, 91, 140, 173, 249
CviQI	GTAC	1 cut(s)	160
DpnI	GATC	4 cut(s)	76, 150, 194, 393
DpnII	GATC	4 cut(s)	74, 148, 192, 391
EciI	GGCGGA	1 cut(s)	258
Eco130I	CCWWGG	2 cut(s)	98, 180
Eco32I	GATATC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	89
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	109
EcoT14I	CCWWGG	2 cut(s)	98, 180
ErhI	CCWWGG	2 cut(s)	98, 180
FaeI	CATG	3 cut(s)	102, 184, 432
FaiI	YATR	6 cut(s)	100, 147, 165, 182, 240, 430
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FatI	CATG	3 cut(s)	98, 180, 428
Fnu4HI	GCNGC	2 cut(s)	60, 174
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	60, 174
GluI	GCNGC	2 cut(s)	60, 174
HapII	CCGG	1 cut(s)	408
Hin1II	CATG	3 cut(s)	102, 184, 432
HincII	GTYRAC	2 cut(s)	349, 386
HindII	GTYRAC	2 cut(s)	349, 386
HinfI	GANTC	2 cut(s)	126, 210
HpaII	CCGG	1 cut(s)	408
Hpy166II	GTNNAC	2 cut(s)	349, 386
Hpy188I	TCNGA	2 cut(s)	69, 170
Hpy188III	TCNNGA	3 cut(s)	38, 152, 395
Hpy8I	GTNNAC	2 cut(s)	349, 386
HpyAV	CCTTC	2 cut(s)	16, 235
HpyCH4III	ACNGT	3 cut(s)	19, 321, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 182
Hsp92II	CATG	3 cut(s)	102, 184, 432
Kzo9I	GATC	4 cut(s)	74, 148, 192, 391
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	6 cut(s)	63, 142, 165, 217, 263, 421
Lsp1109I	GCAGC	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	321
MalI	GATC	4 cut(s)	76, 150, 194, 393
MboI	GATC	4 cut(s)	74, 148, 192, 391
MboII	GAAGA	1 cut(s)	202
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	2 cut(s)	41, 414
MlyI	GAGTC	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	8 cut(s)	45, 105, 187, 195, 200, 246, 353, 357
MseI	TTAA	2 cut(s)	48, 114
MspI	CCGG	1 cut(s)	408
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	59, 182
NcoI	CCATGG	2 cut(s)	98, 180
NdeII	GATC	4 cut(s)	74, 148, 192, 391
NlaIII	CATG	3 cut(s)	102, 184, 432
NlaIV	GGNNCC	2 cut(s)	141, 223
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	2 cut(s)	61, 175
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PspN4I	GGNNCC	2 cut(s)	141, 223
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SaqAI	TTAA	2 cut(s)	48, 114
SatI	GCNGC	2 cut(s)	60, 174
Sau3AI	GATC	4 cut(s)	74, 148, 192, 391
SchI	GAGTC	1 cut(s)	204
SetI	ASST	3 cut(s)	87, 93, 175
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	2 cut(s)	41, 414
SsiI	CCGC	4 cut(s)	60, 120, 229, 269
StyI	CCWWGG	2 cut(s)	98, 180
TaaI	ACNGT	3 cut(s)	19, 321, 383
TasI	AATT	2 cut(s)	41, 414
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	48, 114
Tru9I	TTAA	2 cut(s)	48, 114
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	295
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.