Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004656

Physical Location & Seq

Genomic Coordinates Forward (+)

477003 .. 478886

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCGTCGACGAAGCCCGATTCCGCAATCAACCTTGAAGAAGAGGCTGAAGGCGACGGTGTAGCCGTAGACGATCCGATTTTCATACCGGAGACCACGAACTTACTCGTCCGTTACTCGCCATTCGACGACAGGGACATCGATTGCAATCCTTATTTCCCTTTCACAGGCCCGATTTCAGATTCTGGATCAGGTTCTTACTCGGATTCTGAGCCCGATCCCAACAGCTGTCCCATCGATTTCTTCGATCGAGATTCTTCCGATGTTGACGTGGCTGAGTACTTGGAATCAGGAGGGCTGACCGCCGGTGATTATAATATTTGGGGCTTTTATGACCCCAAGGAAGACGAGGAAGAGGAGGAGATAGTTTTGGGGACTTCCGGGTCGGATCTGCAACCGGGTGATTCAGGGGAGCAAGGGCTTCGAGTGACCGGTATCGATTCAGATTCCGATTGTGAAGATGGCGTGTTTGATTTTATCTCTGAGGATAGTAGCGGGAATAGGGGAAATGATTCGGGTCGGGTCGAGGTTGGTACGGGTCTTCCTCCTGTGTGGGATCATCTCTTCGGAGAGGGAACCGTGTTGGCTGATGAAGAATGGGAGGAGGTGCAGAACGCGATTAACTGGACAGCTTTTAGTGGACCCGAAGATGAGGACGAAGAAGATGAATTGTCTTCACTATCAAGGGATGATGAAGAAGAAGATCATGAACTGGACTGGCAGGTTTTGTTAACTGTTAACAATGTTGTTAATTATATCGAACAAGCTGAAGGAATCATGCTAAACCCTGATGATATCGATCCGGATTATTACCTGTATCTATCTGGTTTGGATGAATTTGATGAAAATCATAGTGGACATTATGATGCTGATGCTATTCTTGGGCAAATGTTTGATGACGAGACTGGAATCAGGGGAAATCCTCCAGCAGCCAAAAGTGTAATTCAGGATCTTCCGGTTGTGGAGCTTGCTGTGGAAGAGTTAGACAAAGGGAACAATGTTTGTGCGGTATGCAAAGATGAAATGTTAGTGGAGGAGAAAGTAAGGAGGCTTCCTTGTAGTCATTTCTATCATGGAGAGTGTATCATACCTTGGTTGGGGATAAGGAATACTTGCCCGGTTTGTCGGTATGAGCTGCCTACTGATGATCTTGAGTATGAAAGACATAAGAGCTCAGAAAGGGGCGATACTGGTTTGGCAAGGAACGTGTTGCCGGGTAGATATAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

409

Amino Acids

45.34

Weight (kDa)

4.05

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	334 - 376	1.8e-13	Ring finger domain
zf-RING_11	PF17123	335 - 362	2.5e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	335 - 375	2.1e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02340 AT3G02340 AT5G15820
fragaria_vesca	FvH4_6g46010 FvH4_6g46010 FvH4_6g46010
malus_domestica	MD09G1078100.v1.1 MD17G1068100.v1.1 MD17G1068500.v1.1
prunus_persica	Prupe.3G246300_v2.0.a1
pyrus_communis	pycom09g00500 pycom17g06870 pycom17g06880
rosa_chinensis	RchiOBHm_Chr2g0164241
rosa_laevigata	RLG00000021448
rosa_multiflora	Rmu_sc0000854.1_g000011 Rmu_sc0001427.1_g000007 Rmu_sc0004956.1_g000001 Rmu_sc0007154.1_g000003 Rmu_sc0008593.1_g000002 Rmu_sc0018459.1_g000001 Rmu_sc0041118.1_g000003
rosa_roxburghii	Rroxscaffold_2G00086690 Rroxscaffold_6G00413980
rosa_rugosa	Rorug02G0507400 Rorug07G0301000
rosa_samantha	Rh2AG575600 Rh2BG586400 Rh2CG557200 Rh2DG596000
rosa_wichuraiana	Rw2G047650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	315
AasI	GACNNNNNNGTC	1 cut(s)	382
Acc36I	ACCTGC	1 cut(s)	712
AccI	GTMKAC	2 cut(s)	8, 69
AccII	CGCG	1 cut(s)	617
AccIII	TCCGGA	1 cut(s)	802
AciI	CCGC	4 cut(s)	24, 303, 495, 1007
AclWI	GGATC	7 cut(s)	68, 196, 212, 396, 564, 794, 957
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	2 cut(s)	69, 789
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	281, 535
AfiI	CCNNNNNNNGG	2 cut(s)	167, 1097
AflIII	ACRYGT	1 cut(s)	1206
AgeI	ACCGGT	1 cut(s)	431
AgsI	TTSAA	1 cut(s)	38
AjiI	CACGTC	1 cut(s)	271
AluBI	AGCT	6 cut(s)	228, 632, 767, 967, 1135, 1173
AluI	AGCT	6 cut(s)	228, 632, 767, 967, 1135, 1173
Alw21I	GWGCWC	1 cut(s)	1175
Alw26I	GTCTC	2 cut(s)	86, 896
AlwI	GGATC	7 cut(s)	68, 196, 212, 396, 564, 794, 957
AlwNI	CAGNNNCTG	1 cut(s)	185
Aor13HI	TCCGGA	1 cut(s)	802
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	929, 1135
ApoI	RAATTY	1 cut(s)	836
AsiGI	ACCGGT	1 cut(s)	431
Asp700I	GAANNNNTTC	1 cut(s)	511
AspS9I	GGNCC	2 cut(s)	170, 641
AsuC2I	CCSGG	4 cut(s)	382, 399, 1118, 1215
AsuHPI	GGTGA	2 cut(s)	320, 413
AvaII	GGWCC	1 cut(s)	641
BanII	GRGCYC	2 cut(s)	216, 1175
BarI	GAAGNNNNNNTAC	2 cut(s)	1035, 1067
BbsI	GAAGAC	3 cut(s)	351, 533, 666
Bbv12I	GWGCWC	1 cut(s)	1175
BbvI	GCAGC	2 cut(s)	941, 1122
BccI	CCATC	2 cut(s)	242, 455
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BcnI	CCSGG	4 cut(s)	382, 399, 1118, 1215
BcoDI	GTCTC	2 cut(s)	86, 896
BfuAI	ACCTGC	1 cut(s)	712
BisI	GCNGC	2 cut(s)	930, 1136
BlsI	GCNGC	2 cut(s)	931, 1137
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	4 cut(s)	382, 399, 1118, 1215
Bme18I	GGWCC	1 cut(s)	641
BmgBI	CACGTC	1 cut(s)	271
BmgT120I	GGNCC	2 cut(s)	170, 641
BmiI	GGNNCC	2 cut(s)	577, 643
BmrFI	CCNGG	4 cut(s)	382, 399, 1118, 1215
BmsI	GCATC	2 cut(s)	856, 862
BpiI	GAAGAC	3 cut(s)	351, 533, 666
BpmI	CTGGAG	1 cut(s)	909
BpuEI	CTTGAG	1 cut(s)	1172
BpuMI	CCSGG	4 cut(s)	382, 399, 1118, 1215
Bsa29I	ATCGAT	4 cut(s)	141, 237, 438, 798
BsaBI	GATNNNNATC	3 cut(s)	147, 798, 846
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	339, 1091
BsaWI	WCCGGW	4 cut(s)	88, 431, 802, 955
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 1097
Bse118I	RCCGGY	2 cut(s)	305, 431
Bse1I	ACTGG	5 cut(s)	629, 717, 722, 910, 1195
Bse8I	GATNNNNATC	3 cut(s)	147, 798, 846
BseAI	TCCGGA	1 cut(s)	802
BseCI	ATCGAT	4 cut(s)	141, 237, 438, 798
BseDI	CCNNGG	2 cut(s)	339, 1091
BseGI	GGATG	2 cut(s)	694, 838
BseJI	GATNNNNATC	3 cut(s)	147, 798, 846
BseLI	CCNNNNNNNGG	2 cut(s)	167, 1097
BseMII	CTCAG	4 cut(s)	201, 267, 474, 1188
BseNI	ACTGG	5 cut(s)	629, 717, 722, 910, 1195
BseRI	GAGGAG	4 cut(s)	371, 374, 617, 1049
BseXI	GCAGC	2 cut(s)	941, 1122
BsgI	GTGCAG	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	617
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	171
BshTI	ACCGGT	1 cut(s)	431
BshVI	ATCGAT	4 cut(s)	141, 237, 438, 798
BsiEI	CGRYCG	1 cut(s)	250
BsiHKAI	GWGCWC	1 cut(s)	1175
BsiSI	CCGG	9 cut(s)	89, 306, 381, 398, 432, 803, 956, 1118, 1214
BslFI	GGGAC	3 cut(s)	149, 216, 388
BslI	CCNNNNNNNGG	2 cut(s)	167, 1097
BsmAI	GTCTC	2 cut(s)	86, 896
BsmFI	GGGAC	3 cut(s)	149, 216, 388
BsnI	GGCC	1 cut(s)	171
Bso31I	GGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	2 cut(s)	216, 1175
Bsp13I	TCCGGA	1 cut(s)	802
BspACI	CCGC	4 cut(s)	24, 303, 495, 1007
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	4 cut(s)	202, 268, 475, 1187
BspDI	ATCGAT	4 cut(s)	141, 237, 438, 798
BspEI	TCCGGA	1 cut(s)	802
BspFNI	CGCG	1 cut(s)	617
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	2 cut(s)	577, 643
BspMI	ACCTGC	1 cut(s)	712
BspPI	GGATC	7 cut(s)	68, 196, 212, 396, 564, 794, 957
BspTNI	GGTCTC	1 cut(s)	86
BsrFI	RCCGGY	2 cut(s)	305, 431
BsrI	ACTGG	5 cut(s)	629, 717, 722, 910, 1195
BssAI	RCCGGY	2 cut(s)	305, 431
BssECI	CCNNGG	2 cut(s)	339, 1091
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	339, 1091
Bst4CI	ACNGT	3 cut(s)	59, 580, 736
Bst6I	CTCTTC	4 cut(s)	36, 348, 569, 972
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	969
BstDEI	CTNAG	4 cut(s)	210, 276, 483, 1174
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	694, 838
BstFNI	CGCG	1 cut(s)	617
BstMAI	GTCTC	2 cut(s)	86, 896
BstMCI	CGRYCG	1 cut(s)	250
BstSCI	CCNGG	4 cut(s)	380, 397, 1116, 1213
BstUI	CGCG	1 cut(s)	617
BstV1I	GCAGC	2 cut(s)	941, 1122
BstV2I	GAAGAC	3 cut(s)	351, 533, 666
BstX2I	RGATCY	2 cut(s)	388, 949
BstYI	RGATCY	2 cut(s)	388, 949
Bsu15I	ATCGAT	4 cut(s)	141, 237, 438, 798
BsuRI	GGCC	1 cut(s)	171
BsuTUI	ATCGAT	4 cut(s)	141, 237, 438, 798
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	694, 838
BveI	ACCTGC	1 cut(s)	712
Cac8I	GCNNGC	1 cut(s)	969
CaiI	CAGNNNCTG	1 cut(s)	185
CciI	TCATGA	1 cut(s)	706
Cfr10I	RCCGGY	2 cut(s)	305, 431
Cfr13I	GGNCC	2 cut(s)	170, 641
ClaI	ATCGAT	4 cut(s)	141, 237, 438, 798
Csp6I	GTAC	2 cut(s)	280, 534
CspAI	ACCGGT	1 cut(s)	431
CviAII	CATG	3 cut(s)	707, 778, 1073
CviQI	GTAC	2 cut(s)	280, 534
DdeI	CTNAG	4 cut(s)	210, 276, 483, 1174
DrdI	GACNNNNNNGTC	1 cut(s)	382
DseDI	GACNNNNNNGTC	1 cut(s)	382
Eam1104I	CTCTTC	4 cut(s)	36, 348, 569, 972
EarI	CTCTTC	4 cut(s)	36, 348, 569, 972
Ecl136II	GAGCTC	1 cut(s)	1173
Eco130I	CCWWGG	2 cut(s)	339, 1091
Eco24I	GRGCYC	2 cut(s)	216, 1175
Eco31I	GGTCTC	1 cut(s)	86
Eco32I	GATATC	1 cut(s)	796
Eco47I	GGWCC	1 cut(s)	641
Eco53kI	GAGCTC	1 cut(s)	1173
Eco57I	CTGAAG	2 cut(s)	69, 789
EcoICRI	GAGCTC	1 cut(s)	1173
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoRV	GATATC	1 cut(s)	796
EcoT14I	CCWWGG	2 cut(s)	339, 1091
EcoT38I	GRGCYC	2 cut(s)	216, 1175
ErhI	CCWWGG	2 cut(s)	339, 1091
FaeI	CATG	3 cut(s)	710, 781, 1076
FalI	AAGNNNNNCTT	2 cut(s)	1096, 1128
FaqI	GGGAC	3 cut(s)	149, 216, 388
FatI	CATG	3 cut(s)	706, 777, 1072
FauI	CCCGC	1 cut(s)	488
FblI	GTMKAC	2 cut(s)	8, 69
Fnu4HI	GCNGC	2 cut(s)	930, 1136
FokI	GGATG	2 cut(s)	701, 845
FriOI	GRGCYC	2 cut(s)	216, 1175
Fsp4HI	GCNGC	2 cut(s)	930, 1136
GluI	GCNGC	2 cut(s)	930, 1136
GsuI	CTGGAG	1 cut(s)	909
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	9 cut(s)	89, 306, 381, 398, 432, 803, 956, 1118, 1214
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	710, 781, 1076
HincII	GTYRAC	4 cut(s)	9, 268, 732, 739
HindII	GTYRAC	4 cut(s)	9, 268, 732, 739
HpaI	GTTAAC	2 cut(s)	732, 739
HpaII	CCGG	9 cut(s)	89, 306, 381, 398, 432, 803, 956, 1118, 1214
HphI	GGTGA	2 cut(s)	320, 413
Hpy166II	GTNNAC	7 cut(s)	9, 70, 268, 641, 732, 739, 857
Hpy188III	TCNNGA	7 cut(s)	186, 251, 291, 707, 803, 947, 1151
Hpy8I	GTNNAC	7 cut(s)	9, 70, 268, 641, 732, 739, 857
Hpy99I	CGWCG	4 cut(s)	10, 13, 59, 131
HpyAV	CCTTC	2 cut(s)	44, 764
HpyCH4III	ACNGT	3 cut(s)	59, 580, 736
HpyCH4IV	ACGT	2 cut(s)	270, 1206
HpyCH4V	TGCA	4 cut(s)	147, 394, 610, 1014
HpyF3I	CTNAG	4 cut(s)	210, 276, 483, 1174
HpySE526I	ACGT	2 cut(s)	270, 1206
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	710, 781, 1076
Kpn2I	TCCGGA	1 cut(s)	802
KspAI	GTTAAC	2 cut(s)	732, 739
LmnI	GCTCC	2 cut(s)	412, 964
Lsp1109I	GCAGC	2 cut(s)	941, 1122
LweI	GCATC	2 cut(s)	856, 862
MaeII	ACGT	2 cut(s)	270, 1206
MaeIII	GTNAC	2 cut(s)	113, 427
MflI	RGATCY	2 cut(s)	388, 949
MhlI	GDGCHC	2 cut(s)	216, 1175
MluCI	AATT	4 cut(s)	668, 751, 836, 942
MmeI	TCCRAC	1 cut(s)	366
MroI	TCCGGA	1 cut(s)	802
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	5 cut(s)	621, 731, 738, 750, 1228
MslI	CAYNNNNRTG	1 cut(s)	864
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	9 cut(s)	89, 306, 381, 398, 432, 803, 956, 1118, 1214
MspR9I	CCNGG	4 cut(s)	382, 399, 1118, 1215
MvnI	CGCG	1 cut(s)	617
NciI	CCSGG	4 cut(s)	382, 399, 1118, 1215
NlaIII	CATG	3 cut(s)	710, 781, 1076
NlaIV	GGNNCC	2 cut(s)	577, 643
NmuCI	GTSAC	1 cut(s)	427
PagI	TCATGA	1 cut(s)	706
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 243
PdmI	GAANNNNTTC	1 cut(s)	511
PinAI	ACCGGT	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	931, 1137
Ple19I	CGATCG	1 cut(s)	250
PsiI	TTATAA	1 cut(s)	315
Psp124BI	GAGCTC	1 cut(s)	1175
PspN4I	GGNNCC	2 cut(s)	577, 643
PspPI	GGNCC	2 cut(s)	170, 641
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	2 cut(s)	388, 949
PvuI	CGATCG	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	228
RsaI	GTAC	2 cut(s)	281, 535
RsaNI	GTAC	2 cut(s)	280, 534
RseI	CAYNNNNRTG	1 cut(s)	864
SacI	GAGCTC	1 cut(s)	1175
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	5 cut(s)	621, 731, 738, 750, 1228
SatI	GCNGC	2 cut(s)	930, 1136
Sau96I	GGNCC	2 cut(s)	170, 641
ScaI	AGTACT	1 cut(s)	281
ScrFI	CCNGG	4 cut(s)	382, 399, 1118, 1215
SduI	GDGCHC	2 cut(s)	216, 1175
SfaNI	GCATC	2 cut(s)	856, 862
SgrAI	CRCCGGYG	1 cut(s)	305
SgrDI	CGTCGACG	1 cut(s)	7
SinI	GGWCC	1 cut(s)	641
SmiMI	CAYNNNNRTG	1 cut(s)	864
SmlI	CTYRAG	1 cut(s)	1151
SmoI	CTYRAG	1 cut(s)	1151
Sse9I	AATT	4 cut(s)	668, 751, 836, 942
SsiI	CCGC	4 cut(s)	24, 303, 495, 1007
SspI	AATATT	1 cut(s)	319
SstI	GAGCTC	1 cut(s)	1175
StyD4I	CCNGG	4 cut(s)	380, 397, 1116, 1213
StyI	CCWWGG	2 cut(s)	339, 1091
TaaI	ACNGT	3 cut(s)	59, 580, 736
TaiI	ACGT	2 cut(s)	273, 1209
TasI	AATT	4 cut(s)	668, 751, 836, 942
TatI	WGTACW	1 cut(s)	279
Tru1I	TTAA	5 cut(s)	621, 731, 738, 750, 1228
Tru9I	TTAA	5 cut(s)	621, 731, 738, 750, 1228
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	2 cut(s)	929, 1135
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	9 cut(s)	73, 606, 681, 708, 723, 849, 858, 1035, 1173
TspGWI	ACGGA	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	641
XagI	CCTNNNNNAGG	1 cut(s)	165
XapI	RAATTY	1 cut(s)	836
XmiI	GTMKAC	2 cut(s)	8, 69
XmnI	GAANNNNTTC	1 cut(s)	511
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.