Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004656

Physical Location & Seq

Genomic Coordinates Forward (+)

4970948 .. 4971526

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g06880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAGCAGAGGAATATGCTTGAAAGTTCTGAATCGACCGAGAGTAATCCGGTCGACGGCGGAGTGGAGGAGCTATCAGTGGTCTCTGGGTTTTTCACCGCGGAAGAAGAAGGAGCAGCACGAAGCCTGGAGTGGGAAATAGTCAACAATTTTCGGAGGTTCGCCGATGATGACGATCTTGACTTAGAGACTGCAGAGTACATCAACACGATTTTCGGGCAATTCGTGGAGAATGCCAACGCCATGAATGGCCATCCTCCGGCAGCTTTAAGCGTGGTCAAAGATCTTCCATTGGTAGAGTTTACAGTCGAAGAATTGAAGAAAAAAGAAGTGGTTTGTGCTGTTTGTAAAGACAGCATTTTGGTGGAGGATAAAGTCAGAAGCTTGCCCTGTTGCCATTACTACCATCATGATTGCATTGTGCCGTGGTTGGGCATTCGGAATACATGCCCTGTTTGTAGGTACGAGCTGCCCACCGACGATCCCGATTACAAAAGGAGCAAGCGTGAAAGTGCTGCTCGTGGTGAGCCAGGGGATTTACAAGTCAGGTTTGAGATTGGATTTGAACAGTTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

193

Amino Acids

21.76

Weight (kDa)

4.5

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	113 - 154	6.9e-12	Ring finger domain
zf-C3HC4_2	PF13923	113 - 153	5.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	113 - 140	6.5e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02340 AT3G02340 AT5G15820
fragaria_vesca	FvH4_6g46010 FvH4_6g46010 FvH4_6g46010
malus_domestica	MD09G1078100.v1.1 MD17G1068100.v1.1 MD17G1068500.v1.1
prunus_persica	Prupe.3G246300_v2.0.a1
pyrus_communis	pycom09g00500 pycom17g06870 pycom17g06880
rosa_chinensis	RchiOBHm_Chr2g0164241
rosa_laevigata	RLG00000021448
rosa_multiflora	Rmu_sc0000854.1_g000011 Rmu_sc0001427.1_g000007 Rmu_sc0004956.1_g000001 Rmu_sc0007154.1_g000003 Rmu_sc0008593.1_g000002 Rmu_sc0018459.1_g000001 Rmu_sc0041118.1_g000003
rosa_roxburghii	Rroxscaffold_2G00086690 Rroxscaffold_6G00413980
rosa_rugosa	Rorug02G0507400 Rorug07G0301000
rosa_samantha	Rh2AG575600 Rh2BG586400 Rh2CG557200 Rh2DG596000
rosa_wichuraiana	Rw2G047650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	101
AciI	CCGC	3 cut(s)	60, 99, 101
AclWI	GGATC	1 cut(s)	476
AcoI	YGGCCR	1 cut(s)	250
AfaI	GTAC	2 cut(s)	200, 464
AfiI	CCNNNNNNNGG	4 cut(s)	56, 133, 259, 431
AgsI	TTSAA	3 cut(s)	23, 319, 566
AjnI	CCWGG	2 cut(s)	126, 529
AluBI	AGCT	4 cut(s)	73, 266, 384, 469
AluI	AGCT	4 cut(s)	73, 266, 384, 469
Alw26I	GTCTC	2 cut(s)	88, 182
AlwI	GGATC	1 cut(s)	476
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	4 cut(s)	116, 263, 469, 515
Asp700I	GAANNNNTTC	1 cut(s)	570
AsuHPI	GGTGA	2 cut(s)	88, 536
BalI	TGGCCA	1 cut(s)	252
BauI	CACGAG	1 cut(s)	519
BbvI	GCAGC	4 cut(s)	128, 275, 456, 502
BccI	CCATC	2 cut(s)	261, 414
BceAI	ACGGC	2 cut(s)	73, 409
BciT130I	CCWGG	2 cut(s)	128, 531
BcoDI	GTCTC	2 cut(s)	88, 182
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	283
BisI	GCNGC	4 cut(s)	117, 264, 470, 516
BlsI	GCNGC	4 cut(s)	118, 265, 471, 517
Bme1390I	CCNGG	2 cut(s)	128, 531
BmrFI	CCNGG	2 cut(s)	128, 531
BpmI	CTGGAG	1 cut(s)	149
BsaBI	GATNNNNATC	1 cut(s)	174
BsaI	GGTCTC	1 cut(s)	88
BsaJI	CCNNGG	3 cut(s)	99, 425, 530
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 133, 259, 431
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	2 cut(s)	128, 531
BseDI	CCNNGG	3 cut(s)	99, 425, 530
BseGI	GGATG	1 cut(s)	253
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	4 cut(s)	56, 133, 259, 431
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	128, 275, 456, 502
Bsh1236I	CGCG	1 cut(s)	101
Bsh1285I	CGRYCG	2 cut(s)	39, 54
BshFI	GGCC	1 cut(s)	252
BsiEI	CGRYCG	2 cut(s)	39, 54
BsiSI	CCGG	2 cut(s)	50, 260
BslI	CCNNNNNNNGG	4 cut(s)	56, 133, 259, 431
BsmAI	GTCTC	2 cut(s)	88, 182
BsmI	GAATGC	2 cut(s)	238, 435
BsnI	GGCC	1 cut(s)	252
Bso31I	GGTCTC	1 cut(s)	88
Bsp143I	GATC	3 cut(s)	175, 283, 481
BspACI	CCGC	3 cut(s)	60, 99, 101
BspANI	GGCC	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	88
BssECI	CCNNGG	3 cut(s)	99, 425, 530
BssMI	GATC	3 cut(s)	175, 283, 481
BssSI	CACGAG	1 cut(s)	519
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	128, 531
Bst4CI	ACNGT	2 cut(s)	307, 570
BstC8I	GCNNGC	2 cut(s)	386, 503
BstDEI	CTNAG	1 cut(s)	184
BstDSI	CCRYGG	2 cut(s)	99, 425
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	101
BstKTI	GATC	3 cut(s)	178, 286, 484
BstMAI	GTCTC	2 cut(s)	88, 182
BstMBI	GATC	3 cut(s)	175, 283, 481
BstMCI	CGRYCG	2 cut(s)	39, 54
BstNI	CCWGG	2 cut(s)	128, 531
BstNSI	RCATGY	1 cut(s)	450
BstSCI	CCNGG	2 cut(s)	126, 529
BstSFI	CTRYAG	1 cut(s)	192
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	4 cut(s)	128, 275, 456, 502
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	252
BtgI	CCRYGG	2 cut(s)	99, 425
BtsCI	GGATG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	386, 503
CciI	TCATGA	1 cut(s)	409
Cfr42I	CCGCGG	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	199, 463
CviAII	CATG	3 cut(s)	244, 410, 447
CviJI	RGCY	7 cut(s)	73, 126, 252, 266, 384, 469, 529
CviKI_1	RGCY	7 cut(s)	73, 126, 252, 266, 384, 469, 529
CviQI	GTAC	2 cut(s)	199, 463
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	3 cut(s)	177, 285, 483
DpnII	GATC	3 cut(s)	175, 283, 481
EaeI	YGGCCR	1 cut(s)	250
EciI	GGCGGA	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	88
EcoRII	CCWGG	2 cut(s)	126, 529
FaeI	CATG	3 cut(s)	247, 413, 450
FaiI	YATR	4 cut(s)	17, 245, 411, 448
FatI	CATG	3 cut(s)	243, 409, 446
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	4 cut(s)	117, 264, 470, 516
FokI	GGATG	1 cut(s)	240
Fsp4HI	GCNGC	4 cut(s)	117, 264, 470, 516
GluI	GCNGC	4 cut(s)	117, 264, 470, 516
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	2 cut(s)	50, 260
Hin1II	CATG	3 cut(s)	247, 413, 450
HincII	GTYRAC	2 cut(s)	55, 145
HindII	GTYRAC	2 cut(s)	55, 145
HindIII	AAGCTT	1 cut(s)	382
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	2 cut(s)	50, 260
HphI	GGTGA	2 cut(s)	88, 536
Hpy166II	GTNNAC	3 cut(s)	55, 145, 303
Hpy188I	TCNGA	4 cut(s)	31, 156, 380, 441
Hpy188III	TCNNGA	3 cut(s)	179, 410, 485
Hpy8I	GTNNAC	3 cut(s)	55, 145, 303
Hpy99I	CGWCG	2 cut(s)	59, 482
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	2 cut(s)	307, 570
HpyCH4V	TGCA	2 cut(s)	194, 417
HpyF3I	CTNAG	1 cut(s)	184
Hsp92II	CATG	3 cut(s)	247, 413, 450
KspI	CCGCGG	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	175, 283, 481
LmnI	GCTCC	4 cut(s)	4, 70, 113, 498
Lsp1109I	GCAGC	4 cut(s)	128, 275, 456, 502
MalI	GATC	3 cut(s)	177, 285, 483
MboI	GATC	3 cut(s)	175, 283, 481
MboII	GAAGA	5 cut(s)	116, 119, 278, 323, 331
MflI	RGATCY	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	252
MluCI	AATT	3 cut(s)	148, 221, 314
MluNI	TGGCCA	1 cut(s)	252
MnlI	CCTC	5 cut(s)	3, 61, 150, 267, 361
Mox20I	TGGCCA	1 cut(s)	252
MroXI	GAANNNNTTC	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	252
MseI	TTAA	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	2 cut(s)	50, 260
MspR9I	CCNGG	2 cut(s)	128, 531
Mva1269I	GAATGC	2 cut(s)	238, 435
MvaI	CCWGG	2 cut(s)	128, 531
MvnI	CGCG	1 cut(s)	101
NdeII	GATC	3 cut(s)	175, 283, 481
NlaIII	CATG	3 cut(s)	247, 413, 450
NspI	RCATGY	1 cut(s)	450
PagI	TCATGA	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	2 cut(s)	238, 435
PdmI	GAANNNNTTC	1 cut(s)	570
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	4 cut(s)	118, 265, 471, 517
Psp6I	CCWGG	2 cut(s)	126, 529
PspGI	CCWGG	2 cut(s)	126, 529
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	2 cut(s)	200, 464
RsaNI	GTAC	2 cut(s)	199, 463
RseI	CAYNNNNRTG	1 cut(s)	362
SacII	CCGCGG	1 cut(s)	102
SalI	GTCGAC	1 cut(s)	53
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	4 cut(s)	117, 264, 470, 516
Sau3AI	GATC	3 cut(s)	175, 283, 481
ScrFI	CCNGG	2 cut(s)	128, 531
SetI	ASST	7 cut(s)	75, 161, 268, 386, 464, 471, 551
SfcI	CTRYAG	1 cut(s)	192
Sfr303I	CCGCGG	1 cut(s)	102
SgrBI	CCGCGG	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	148, 221, 314
SsiI	CCGC	3 cut(s)	60, 99, 101
StyD4I	CCNGG	2 cut(s)	126, 529
TaaI	ACNGT	2 cut(s)	307, 570
TaqI	TCGA	3 cut(s)	35, 54, 309
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	148, 221, 314
TatI	WGTACW	1 cut(s)	198
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	4 cut(s)	116, 263, 469, 515
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	84
XceI	RCATGY	1 cut(s)	450
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.