Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004656

Physical Location & Seq

Genomic Coordinates Forward (+)

4970375 .. 4970886

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g06870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCTGAGCCCTCCGCCACCACTCAGCTACCCGGCGACCCACAACCAACAAATGAACCCGTTGACCCGCGAACCCACCCAACCCTCCTCATCGATCACCTCACCCACTGCTGCGCCAACCAAAACTGCAATCCCTTCGCCGCCGATCCTCTTGATACCCGGAGCACCTCCGATCGCAACTGGTTCTCCGATGCCGCCTCCGATTCTGACCATGACGTCAGCTGCTTGGTCACCGATCTTTTCGACCGCAGCAGCTCGGAGCAGCAGCGCAATACCGACTGCGTTGTCGATTCGGGTTCGCGGTCGGATCCGTTTGCGACCGAATTGGAAATTGGGGGTGTTGAGGACGGCGACGAAACGGAGTCGAATTTAGGGTTTGGGTCAAACTCTATGGGATCGGTTTCGGCTTCGGATTGTTGGGTTGGAGTTGGAATCGGATTCGGATTCAGGTACAATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

154

Amino Acids

16.46

Weight (kDa)

4.11

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02340 AT3G02340 AT5G15820
fragaria_vesca	FvH4_6g46010 FvH4_6g46010 FvH4_6g46010
malus_domestica	MD09G1078100.v1.1 MD17G1068100.v1.1 MD17G1068500.v1.1
prunus_persica	Prupe.3G246300_v2.0.a1
pyrus_communis	pycom09g00500 pycom17g06870 pycom17g06880
rosa_chinensis	RchiOBHm_Chr2g0164241
rosa_laevigata	RLG00000021448
rosa_multiflora	Rmu_sc0000854.1_g000011 Rmu_sc0001427.1_g000007 Rmu_sc0004956.1_g000001 Rmu_sc0007154.1_g000003 Rmu_sc0008593.1_g000002 Rmu_sc0018459.1_g000001 Rmu_sc0041118.1_g000003
rosa_roxburghii	Rroxscaffold_2G00086690 Rroxscaffold_6G00413980
rosa_rugosa	Rorug02G0507400 Rorug07G0301000
rosa_samantha	Rh2AG575600 Rh2BG586400 Rh2CG557200 Rh2DG596000
rosa_wichuraiana	Rw2G047650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	215, 284
AatII	GACGTC	1 cut(s)	219
AccII	CGCG	2 cut(s)	70, 301
AciI	CCGC	6 cut(s)	15, 68, 141, 195, 247, 301
AclWI	GGATC	4 cut(s)	140, 302, 315, 403
AcsI	RAATTY	1 cut(s)	367
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	452
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	3 cut(s)	28, 222, 255
AluI	AGCT	3 cut(s)	28, 222, 255
Alw21I	GWGCWC	1 cut(s)	167
AlwI	GGATC	4 cut(s)	140, 302, 315, 403
ApeKI	GCWGC	6 cut(s)	111, 222, 249, 252, 262, 265
ApoI	RAATTY	1 cut(s)	367
AspLEI	GCGC	2 cut(s)	116, 270
AsuC2I	CCSGG	2 cut(s)	33, 160
AsuHPI	GGTGA	3 cut(s)	89, 94, 223
BamHI	GGATCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	6 cut(s)	98, 209, 261, 264, 274, 277
BceAI	ACGGC	1 cut(s)	364
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BcnI	CCSGG	2 cut(s)	33, 160
BisI	GCNGC	8 cut(s)	112, 141, 195, 223, 250, 253, 263, 266
BlsI	GCNGC	8 cut(s)	113, 142, 196, 224, 251, 254, 264, 267
Bme1390I	CCNGG	2 cut(s)	33, 160
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	2 cut(s)	33, 160
BmsI	GCATC	1 cut(s)	181
BpuMI	CCSGG	2 cut(s)	33, 160
Bsa29I	ATCGAT	2 cut(s)	93, 457
BsaHI	GRCGYC	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bse1I	ACTGG	1 cut(s)	185
BseCI	ATCGAT	2 cut(s)	93, 457
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	185
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	6 cut(s)	98, 209, 261, 264, 274, 277
Bsh1236I	CGCG	2 cut(s)	70, 301
Bsh1285I	CGRYCG	4 cut(s)	175, 247, 305, 321
BshVI	ATCGAT	2 cut(s)	93, 457
BsiEI	CGRYCG	4 cut(s)	175, 247, 305, 321
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	33, 160
Bsp1286I	GDGCHC	2 cut(s)	12, 167
Bsp143I	GATC	6 cut(s)	94, 145, 172, 235, 307, 395
BspACI	CCGC	6 cut(s)	15, 68, 141, 195, 247, 301
BspCNI	CTCAG	1 cut(s)	37
BspDI	ATCGAT	2 cut(s)	93, 457
BspFNI	CGCG	2 cut(s)	70, 301
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	4 cut(s)	140, 302, 315, 403
BsrI	ACTGG	1 cut(s)	185
BssMI	GATC	6 cut(s)	94, 145, 172, 235, 307, 395
BssNI	GRCGYC	1 cut(s)	216
BstACI	GRCGYC	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	6, 24
BstEII	GGTNACC	1 cut(s)	229
BstFNI	CGCG	2 cut(s)	70, 301
BstHHI	GCGC	2 cut(s)	116, 270
BstKTI	GATC	6 cut(s)	97, 148, 175, 238, 310, 398
BstMBI	GATC	6 cut(s)	94, 145, 172, 235, 307, 395
BstMCI	CGRYCG	4 cut(s)	175, 247, 305, 321
BstPI	GGTNACC	1 cut(s)	229
BstSCI	CCNGG	2 cut(s)	31, 158
BstUI	CGCG	2 cut(s)	70, 301
BstV1I	GCAGC	6 cut(s)	98, 209, 261, 264, 274, 277
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
Bsu15I	ATCGAT	2 cut(s)	93, 457
BsuTUI	ATCGAT	2 cut(s)	93, 457
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
CfoI	GCGC	2 cut(s)	116, 270
ClaI	ATCGAT	2 cut(s)	93, 457
Csp6I	GTAC	1 cut(s)	451
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	5 cut(s)	10, 28, 222, 255, 407
CviKI_1	RGCY	5 cut(s)	10, 28, 222, 255, 407
CviQI	GTAC	1 cut(s)	451
DdeI	CTNAG	2 cut(s)	6, 24
DpnI	GATC	6 cut(s)	96, 147, 174, 237, 309, 397
DpnII	GATC	6 cut(s)	94, 145, 172, 235, 307, 395
DrdI	GACNNNNNNGTC	2 cut(s)	215, 284
DseDI	GACNNNNNNGTC	2 cut(s)	215, 284
EciI	GGCGGA	1 cut(s)	4
Eco24I	GRGCYC	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	229
EcoO65I	GGTNACC	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	12
FaeI	CATG	1 cut(s)	215
FaiI	YATR	2 cut(s)	213, 392
FatI	CATG	1 cut(s)	211
FauI	CCCGC	1 cut(s)	75
Fnu4HI	GCNGC	8 cut(s)	112, 141, 195, 223, 250, 253, 263, 266
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	8 cut(s)	112, 141, 195, 223, 250, 253, 263, 266
GlaI	GCGC	2 cut(s)	115, 269
GluI	GCNGC	8 cut(s)	112, 141, 195, 223, 250, 253, 263, 266
HapII	CCGG	2 cut(s)	33, 160
HhaI	GCGC	2 cut(s)	116, 270
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	1 cut(s)	215
Hin6I	GCGC	2 cut(s)	114, 268
HinP1I	GCGC	2 cut(s)	114, 268
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	6 cut(s)	203, 290, 362, 432, 438, 444
HpaII	CCGG	2 cut(s)	33, 160
HphI	GGTGA	3 cut(s)	89, 94, 223
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	1 cut(s)	129
HpyF3I	CTNAG	2 cut(s)	6, 24
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	215
HspAI	GCGC	2 cut(s)	114, 268
Kzo9I	GATC	6 cut(s)	94, 145, 172, 235, 307, 395
LmnI	GCTCC	2 cut(s)	162, 259
LpnPI	CCDG	4 cut(s)	46, 166, 173, 433
Lsp1109I	GCAGC	6 cut(s)	98, 209, 261, 264, 274, 277
LweI	GCATC	1 cut(s)	181
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	6 cut(s)	96, 147, 174, 237, 309, 397
MboI	GATC	6 cut(s)	94, 145, 172, 235, 307, 395
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	12, 167
MluCI	AATT	3 cut(s)	323, 330, 367
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	3 cut(s)	285, 403, 409
MnlI	CCTC	8 cut(s)	22, 95, 98, 110, 159, 178, 208, 337
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	2 cut(s)	33, 160
MspR9I	CCNGG	2 cut(s)	33, 160
MvnI	CGCG	2 cut(s)	70, 301
NciI	CCSGG	2 cut(s)	33, 160
NdeII	GATC	6 cut(s)	94, 145, 172, 235, 307, 395
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	229
PfeI	GAWTC	5 cut(s)	203, 290, 432, 438, 444
PkrI	GCNGC	8 cut(s)	113, 142, 196, 224, 251, 254, 264, 267
Ple19I	CGATCG	1 cut(s)	175
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PspEI	GGTNACC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	307
PvuI	CGATCG	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	222
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
SatI	GCNGC	8 cut(s)	112, 141, 195, 223, 250, 253, 263, 266
Sau3AI	GATC	6 cut(s)	94, 145, 172, 235, 307, 395
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	2 cut(s)	33, 160
SduI	GDGCHC	2 cut(s)	12, 167
SetI	ASST	7 cut(s)	30, 102, 170, 219, 224, 257, 452
SfaNI	GCATC	1 cut(s)	181
Sse9I	AATT	3 cut(s)	323, 330, 367
SsiI	CCGC	6 cut(s)	15, 68, 141, 195, 247, 301
StyD4I	CCNGG	2 cut(s)	31, 158
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	5 cut(s)	93, 243, 288, 365, 457
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	3 cut(s)	323, 330, 367
TauI	GCSGC	2 cut(s)	143, 197
TfiI	GAWTC	5 cut(s)	203, 290, 432, 438, 444
TscAI	CASTG	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	6 cut(s)	111, 222, 249, 252, 262, 265
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	2 cut(s)	300, 374
TspRI	CASTG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	367
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.