Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004656

Physical Location & Seq

Genomic Coordinates Forward (+)

5553497 .. 5553937

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1068500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGAGTGGGAAATAGTCAACAATTTTCGGAGGTTCGCGGATGATGACGATCTTGACTTAGAGACTGCAGAGTACGTCAACACGATTTTCGGGCAATTCGTGGAGAATGCCAATGCCATGAATGGCCGTCCTCCGGCAGCTTTAAGCGTGGTCGAAGATCTTCCATTGGTAGAGTTTACAGTCGAAGAATTGAAGAAAGAAGAAGCAGTTTGTGCTGTTTGTAAAGACAGCATTTTGGTGGAGGATAAAGTCAGAAGCTTGCCCTGCTGCCATTACTACCATCATGATTGCATTGTGCCGTGGTTGGGCATTCGGAATACATGCCCTGTTTGTAGGTACGAGCTGCCCACCGATGATCCCGATTACGAAAGGAGCAAGCGTGAAAGTGCTGCTCGTGGTGAGCCGGGGGATTTACAAGTCAGGTTTGAACAGTTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

147

Amino Acids

16.82

Weight (kDa)

4.46

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	71 - 112	2.8e-12	Ring finger domain
zf-C3HC4_2	PF13923	71 - 111	3.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	71 - 98	4.2e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02340 AT3G02340 AT5G15820
fragaria_vesca	FvH4_6g46010 FvH4_6g46010 FvH4_6g46010
malus_domestica	MD09G1078100.v1.1 MD17G1068100.v1.1 MD17G1068500.v1.1
prunus_persica	Prupe.3G246300_v2.0.a1
pyrus_communis	pycom09g00500 pycom17g06870 pycom17g06880
rosa_chinensis	RchiOBHm_Chr2g0164241
rosa_laevigata	RLG00000021448
rosa_multiflora	Rmu_sc0000854.1_g000011 Rmu_sc0001427.1_g000007 Rmu_sc0004956.1_g000001 Rmu_sc0007154.1_g000003 Rmu_sc0008593.1_g000002 Rmu_sc0018459.1_g000001 Rmu_sc0041118.1_g000003
rosa_roxburghii	Rroxscaffold_2G00086690 Rroxscaffold_6G00413980
rosa_rugosa	Rorug02G0507400 Rorug07G0301000
rosa_samantha	Rh2AG575600 Rh2BG586400 Rh2CG557200 Rh2DG596000
rosa_wichuraiana	Rw2G047650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	124
AfaI	GTAC	2 cut(s)	74, 338
AfiI	CCNNNNNNNGG	2 cut(s)	133, 305
AgsI	TTSAA	2 cut(s)	193, 428
AluBI	AGCT	3 cut(s)	140, 258, 343
AluI	AGCT	3 cut(s)	140, 258, 343
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	350
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	4 cut(s)	137, 267, 343, 389
Asp700I	GAANNNNTTC	1 cut(s)	159
AsuC2I	CCSGG	1 cut(s)	405
AsuHPI	GGTGA	1 cut(s)	410
BauI	CACGAG	1 cut(s)	393
BbvI	GCAGC	4 cut(s)	149, 254, 330, 376
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	2 cut(s)	111, 283
BcnI	CCSGG	1 cut(s)	405
BcoDI	GTCTC	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	66
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	4 cut(s)	138, 268, 344, 390
BlsI	GCNGC	4 cut(s)	139, 269, 345, 391
Bme1390I	CCNGG	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	405
BsaBI	GATNNNNATC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	299, 404
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 305
Bse8I	GATNNNNATC	1 cut(s)	48
BseDI	CCNNGG	2 cut(s)	299, 404
BseGI	GGATG	1 cut(s)	46
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	2 cut(s)	133, 305
BseXI	GCAGC	4 cut(s)	149, 254, 330, 376
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	126
BsiSI	CCGG	2 cut(s)	134, 404
BslI	CCNNNNNNNGG	2 cut(s)	133, 305
BsmAI	GTCTC	1 cut(s)	56
BsmI	GAATGC	2 cut(s)	112, 309
BsnI	GGCC	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	49, 157, 355
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	283
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	1 cut(s)	350
BssECI	CCNNGG	2 cut(s)	299, 404
BssMI	GATC	3 cut(s)	49, 157, 355
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst4CI	ACNGT	2 cut(s)	181, 432
BstAPI	GCANNNNNTGC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	260, 377
BstDEI	CTNAG	1 cut(s)	58
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	3 cut(s)	52, 160, 358
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	3 cut(s)	49, 157, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 264
BstNSI	RCATGY	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	403
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	4 cut(s)	149, 254, 330, 376
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	126
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	260, 377
CciI	TCATGA	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	73, 337
CviAII	CATG	3 cut(s)	118, 284, 321
CviJI	RGCY	5 cut(s)	126, 140, 258, 343, 403
CviKI_1	RGCY	5 cut(s)	126, 140, 258, 343, 403
CviQI	GTAC	2 cut(s)	73, 337
DdeI	CTNAG	1 cut(s)	58
DpnI	GATC	3 cut(s)	51, 159, 357
DpnII	GATC	3 cut(s)	49, 157, 355
EaeI	YGGCCR	1 cut(s)	124
FaeI	CATG	3 cut(s)	121, 287, 324
FaiI	YATR	3 cut(s)	119, 285, 322
FatI	CATG	3 cut(s)	117, 283, 320
Fnu4HI	GCNGC	4 cut(s)	138, 268, 344, 390
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	4 cut(s)	138, 268, 344, 390
GluI	GCNGC	4 cut(s)	138, 268, 344, 390
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	2 cut(s)	134, 404
Hin1II	CATG	3 cut(s)	121, 287, 324
HincII	GTYRAC	2 cut(s)	19, 79
HindII	GTYRAC	2 cut(s)	19, 79
HindIII	AAGCTT	1 cut(s)	256
HpaII	CCGG	2 cut(s)	134, 404
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	3 cut(s)	19, 79, 177
Hpy188I	TCNGA	3 cut(s)	30, 254, 315
Hpy188III	TCNNGA	3 cut(s)	53, 284, 359
Hpy8I	GTNNAC	3 cut(s)	19, 79, 177
HpyCH4III	ACNGT	2 cut(s)	181, 432
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	68, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 264
HpyF3I	CTNAG	1 cut(s)	58
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	121, 287, 324
Kzo9I	GATC	3 cut(s)	49, 157, 355
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	5 cut(s)	147, 277, 339, 406, 417
Lsp1109I	GCAGC	4 cut(s)	149, 254, 330, 376
MaeII	ACGT	1 cut(s)	75
MalI	GATC	3 cut(s)	51, 159, 357
MboI	GATC	3 cut(s)	49, 157, 355
MboII	GAAGA	5 cut(s)	152, 167, 197, 205, 212
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	3 cut(s)	22, 95, 188
MnlI	CCTC	3 cut(s)	24, 141, 235
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	236
MspI	CCGG	2 cut(s)	134, 404
MspR9I	CCNGG	1 cut(s)	405
Mva1269I	GAATGC	2 cut(s)	112, 309
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	212, 264
NciI	CCSGG	1 cut(s)	405
NdeII	GATC	3 cut(s)	49, 157, 355
NlaIII	CATG	3 cut(s)	121, 287, 324
NspI	RCATGY	1 cut(s)	324
PagI	TCATGA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PctI	GAATGC	2 cut(s)	112, 309
PdmI	GAANNNNTTC	1 cut(s)	159
PkrI	GCNGC	4 cut(s)	139, 269, 345, 391
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	2 cut(s)	74, 338
RsaNI	GTAC	2 cut(s)	73, 337
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	4 cut(s)	138, 268, 344, 390
Sau3AI	GATC	3 cut(s)	49, 157, 355
ScrFI	CCNGG	1 cut(s)	405
SetI	ASST	7 cut(s)	35, 78, 142, 260, 338, 345, 425
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	22, 95, 188
SsiI	CCGC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	181, 432
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	153, 183
TasI	AATT	3 cut(s)	22, 95, 188
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TseI	GCWGC	4 cut(s)	137, 267, 343, 389
TspDTI	ATGAA	1 cut(s)	134
XceI	RCATGY	1 cut(s)	324
XmnI	GAANNNNTTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.