Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041118.1

Orthogroup ID

OG0004656

Physical Location & Seq

Genomic Coordinates Forward (+)

1538 .. 2065

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041118.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atgtctaagactcctcacctacctagcgacccagagccaccaaaccaacctaacccgccccgactcagtcgctggtgcacccatcacaacttcaaccccttcgccgatcccatcgattcctgcagctccgaaggcgacttcttctccaacgccgcctccgattccgaccatgacgtcagctgcttcgtcactgatctctgcgaccgtcgcgcctcctccgatcatctccccaacgactgcgtcctcatctgggatccgtttgtgaccaaactggagattgaaggtgacgacggcgatgatctcatgtcaaattccaatttagggctagggtttggggccgagtcaaattctcaaggcttcggttctgaatttggtgactttctagctcttcaagggctttgggttgttaggttggagtccgattcggatttggataacaatgaattcgaaagaaatcaggtcagcgagggtatcaagtcaatttgggatagtattttcatggaggagcagacaaatgcatatgagaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

176

Amino Acids

19.61

Weight (kDa)

4.05

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02340 AT3G02340 AT5G15820
fragaria_vesca	FvH4_6g46010 FvH4_6g46010 FvH4_6g46010
malus_domestica	MD09G1078100.v1.1 MD17G1068100.v1.1 MD17G1068500.v1.1
prunus_persica	Prupe.3G246300_v2.0.a1
pyrus_communis	pycom09g00500 pycom17g06870 pycom17g06880
rosa_chinensis	RchiOBHm_Chr2g0164241
rosa_laevigata	RLG00000021448
rosa_multiflora	Rmu_sc0000854.1_g000011 Rmu_sc0001427.1_g000007 Rmu_sc0004956.1_g000001 Rmu_sc0007154.1_g000003 Rmu_sc0008593.1_g000002 Rmu_sc0018459.1_g000001 Rmu_sc0041118.1_g000003
rosa_roxburghii	Rroxscaffold_2G00086690 Rroxscaffold_6G00413980
rosa_rugosa	Rorug02G0507400 Rorug07G0301000
rosa_samantha	Rh2AG575600 Rh2BG586400 Rh2CG557200 Rh2DG596000
rosa_wichuraiana	Rw2G047650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AatII	GACGTC	1 cut(s)	177
AccII	CGCG	1 cut(s)	210
AciI	CCGC	2 cut(s)	56, 153
AclWI	GGATC	3 cut(s)	101, 248, 261
AcsI	RAATTY	4 cut(s)	310, 346, 368, 443
AcyI	GRCGYC	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	250, 321
AgsI	TTSAA	3 cut(s)	94, 281, 392
AluBI	AGCT	3 cut(s)	126, 180, 386
AluI	AGCT	3 cut(s)	126, 180, 386
Alw21I	GWGCWC	1 cut(s)	80
Alw44I	GTGCAC	1 cut(s)	76
AlwI	GGATC	3 cut(s)	101, 248, 261
AlwNI	CAGNNNCTG	1 cut(s)	72
AoxI	GGCC	1 cut(s)	336
ApaLI	GTGCAC	1 cut(s)	76
ApeKI	GCWGC	2 cut(s)	123, 180
ApoI	RAATTY	4 cut(s)	310, 346, 368, 443
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	336
AsuHPI	GGTGA	3 cut(s)	8, 296, 386
AsuII	TTCGAA	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	80
BamHI	GGATCC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	135, 167
BccI	CCATC	2 cut(s)	90, 119
BceAI	ACGGC	1 cut(s)	307
BfaI	CTAG	3 cut(s)	24, 326, 383
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	3 cut(s)	124, 153, 181
BlsI	GCNGC	3 cut(s)	125, 154, 182
BmgT120I	GGNCC	1 cut(s)	336
BmiI	GGNNCC	2 cut(s)	255, 337
BpmI	CTGGAG	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	174
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 140, 158, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 321
Bse1I	ACTGG	1 cut(s)	276
BseCI	ATCGAT	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	250, 321
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	2 cut(s)	205, 518
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	2 cut(s)	135, 167
Bsh1236I	CGCG	1 cut(s)	210
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	1 cut(s)	338
BshVI	ATCGAT	1 cut(s)	114
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	250, 321
BsnI	GGCC	1 cut(s)	338
Bsp119I	TTCGAA	1 cut(s)	447
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	5 cut(s)	106, 193, 220, 253, 298
BspACI	CCGC	2 cut(s)	56, 153
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	78
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	255, 337
BspMAI	CTGCAG	1 cut(s)	125
BspPI	GGATC	3 cut(s)	101, 248, 261
BspQI	GCTCTTC	1 cut(s)	393
BspT104I	TTCGAA	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	276
BssMI	GATC	5 cut(s)	106, 193, 220, 253, 298
BssNI	GRCGYC	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	1 cut(s)	174
BstBI	TTCGAA	1 cut(s)	447
BstDEI	CTNAG	2 cut(s)	6, 65
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	5 cut(s)	109, 196, 223, 256, 301
BstMBI	GATC	5 cut(s)	106, 193, 220, 253, 298
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 207
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	135, 167
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
Bsu15I	ATCGAT	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	338
BsuTUI	ATCGAT	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	309
BtsIMutI	CAGTG	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	72
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	336
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	229
CviAII	CATG	3 cut(s)	170, 304, 499
CviJI	RGCY	8 cut(s)	37, 126, 180, 325, 338, 357, 386, 397
CviKI_1	RGCY	8 cut(s)	37, 126, 180, 325, 338, 357, 386, 397
DdeI	CTNAG	2 cut(s)	6, 65
DpnI	GATC	5 cut(s)	108, 195, 222, 255, 300
DpnII	GATC	5 cut(s)	106, 193, 220, 253, 298
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
EcoRI	GAATTC	1 cut(s)	443
EcoT22I	ATGCAT	1 cut(s)	520
FaeI	CATG	3 cut(s)	173, 307, 502
FaiI	YATR	5 cut(s)	171, 305, 500, 520, 522
FatI	CATG	3 cut(s)	169, 303, 498
FauI	CCCGC	1 cut(s)	63
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	3 cut(s)	124, 153, 181
Fsp4HI	GCNGC	3 cut(s)	124, 153, 181
FspBI	CTAG	3 cut(s)	24, 326, 383
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	124, 153, 181
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	338
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	3 cut(s)	173, 307, 502
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	7 cut(s)	10, 63, 116, 161, 341, 416, 422
HphI	GGTGA	3 cut(s)	8, 296, 386
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	7 cut(s)	130, 160, 166, 220, 367, 421, 427
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	2 cut(s)	210, 293
HpyAV	CCTTC	3 cut(s)	109, 125, 275
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	78, 123, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 207
HpyF3I	CTNAG	2 cut(s)	6, 65
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	3 cut(s)	173, 307, 502
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	5 cut(s)	106, 193, 220, 253, 298
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	131, 505
LpnPI	CCDG	6 cut(s)	45, 58, 133, 235, 257, 443
Lsp1109I	GCAGC	2 cut(s)	135, 167
MaeI	CTAG	3 cut(s)	24, 326, 383
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	4 cut(s)	187, 262, 284, 374
MalI	GATC	5 cut(s)	108, 195, 222, 255, 300
MboI	GATC	5 cut(s)	106, 193, 220, 253, 298
MboII	GAAGA	2 cut(s)	133, 380
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	6 cut(s)	310, 316, 346, 368, 443, 480
MlyI	GAGTC	4 cut(s)	4, 57, 350, 425
MmeI	TCCRAC	3 cut(s)	171, 189, 393
MnlI	CCTC	7 cut(s)	24, 166, 223, 226, 254, 460, 496
Mph1103I	ATGCAT	1 cut(s)	520
MspA1I	CMGCKG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	132, 207
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	5 cut(s)	106, 193, 220, 253, 298
NlaIII	CATG	3 cut(s)	173, 307, 502
NlaIV	GGNNCC	2 cut(s)	255, 337
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	4 cut(s)	187, 262, 284, 374
NsiI	ATGCAT	1 cut(s)	520
NspV	TTCGAA	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	116, 161, 422
PflFI	GACNNNGTC	2 cut(s)	66, 239
PkrI	GCNGC	3 cut(s)	125, 154, 182
PleI	GAGTC	4 cut(s)	4, 57, 349, 424
PpsI	GAGTC	4 cut(s)	4, 57, 349, 424
PspN4I	GGNNCC	2 cut(s)	255, 337
PspPI	GGNCC	1 cut(s)	336
PstI	CTGCAG	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	253
PsyI	GACNNNGTC	2 cut(s)	66, 239
PvuII	CAGCTG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	393
SatI	GCNGC	3 cut(s)	124, 153, 181
Sau3AI	GATC	5 cut(s)	106, 193, 220, 253, 298
Sau96I	GGNCC	1 cut(s)	336
SchI	GAGTC	4 cut(s)	4, 57, 350, 425
SduI	GDGCHC	1 cut(s)	80
SfcI	CTRYAG	1 cut(s)	121
SfuI	TTCGAA	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	6 cut(s)	310, 316, 346, 368, 443, 480
SsiI	CCGC	2 cut(s)	56, 153
SspMI	CTAG	3 cut(s)	24, 326, 383
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	114, 447
TasI	AATT	6 cut(s)	310, 316, 346, 368, 443, 480
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	3 cut(s)	116, 161, 422
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	4 cut(s)	187, 262, 284, 374
TseI	GCWGC	2 cut(s)	123, 180
Tsp45I	GTSAC	4 cut(s)	187, 262, 284, 374
TspDTI	ATGAA	2 cut(s)	456, 487
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	196
Tth111I	GACNNNGTC	2 cut(s)	66, 239
VneI	GTGCAC	1 cut(s)	76
XapI	RAATTY	4 cut(s)	310, 346, 368, 443
XspI	CTAG	3 cut(s)	24, 326, 383
ZraI	GACGTC	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.