E3 ubiquitin-protein ligase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02340 AT3G02340 AT5G15820 |
| fragaria_vesca | FvH4_6g46010 FvH4_6g46010 FvH4_6g46010 |
| malus_domestica | MD09G1078100.v1.1 MD17G1068100.v1.1 MD17G1068500.v1.1 |
| prunus_persica | Prupe.3G246300_v2.0.a1 |
| pyrus_communis | pycom09g00500 pycom17g06870 pycom17g06880 |
| rosa_chinensis | RchiOBHm_Chr2g0164241 |
| rosa_laevigata | RLG00000021448 |
| rosa_multiflora | Rmu_sc0000854.1_g000011 Rmu_sc0001427.1_g000007 Rmu_sc0004956.1_g000001 Rmu_sc0007154.1_g000003 Rmu_sc0008593.1_g000002 Rmu_sc0018459.1_g000001 Rmu_sc0041118.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00086690 Rroxscaffold_6G00413980 |
| rosa_rugosa | Rorug02G0507400 Rorug07G0301000 |
| rosa_samantha | Rh2AG575600 Rh2BG586400 Rh2CG557200 Rh2DG596000 |
| rosa_wichuraiana | Rw2G047650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 182 |
| AatII | GACGTC | 1 cut(s) | 186 |
| AccBSI | CCGCTC | 1 cut(s) | 671 |
| AccI | GTMKAC | 1 cut(s) | 490 |
| AccII | CGCG | 2 cut(s) | 219, 281 |
| AciI | CCGC | 9 cut(s) | 38, 56, 79, 130, 162, 407, 671, 827, 835 |
| AclWI | GGATC | 1 cut(s) | 110 |
| AcsI | RAATTY | 5 cut(s) | 328, 364, 386, 461, 544 |
| AcuI | CTGAAG | 1 cut(s) | 666 |
| AcyI | GRCGYC | 2 cut(s) | 159, 183 |
| AfaI | GTAC | 1 cut(s) | 764 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 339, 826, 1023, 1096 |
| AgsI | TTSAA | 3 cut(s) | 103, 594, 1124 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 322 |
| AjnI | CCWGG | 1 cut(s) | 369 |
| AluBI | AGCT | 7 cut(s) | 135, 189, 404, 619, 742, 880, 948 |
| AluI | AGCT | 7 cut(s) | 135, 189, 404, 619, 742, 880, 948 |
| Alw21I | GWGCWC | 1 cut(s) | 89 |
| Alw26I | GTCTC | 2 cut(s) | 2, 746 |
| Alw44I | GTGCAC | 1 cut(s) | 85 |
| AlwI | GGATC | 1 cut(s) | 110 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 249, 383 |
| Ama87I | CYCGRG | 1 cut(s) | 320 |
| AoxI | GGCC | 3 cut(s) | 354, 627, 1087 |
| ApaLI | GTGCAC | 1 cut(s) | 85 |
| ApeKI | GCWGC | 5 cut(s) | 132, 189, 580, 816, 1079 |
| ApoI | RAATTY | 5 cut(s) | 328, 364, 386, 461, 544 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 839, 871 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 713 |
| AspLEI | GCGC | 1 cut(s) | 221 |
| AspS9I | GGNCC | 3 cut(s) | 354, 658, 847 |
| AsuHPI | GGTGA | 6 cut(s) | 8, 67, 190, 314, 404, 952 |
| AsuII | TTCGAA | 1 cut(s) | 465 |
| AvaI | CYCGRG | 1 cut(s) | 320 |
| AvaII | GGWCC | 2 cut(s) | 658, 847 |
| BaeGI | GKGCMC | 1 cut(s) | 89 |
| BanII | GRGCYC | 1 cut(s) | 377 |
| BauI | CACGAG | 1 cut(s) | 1083 |
| Bbv12I | GWGCWC | 1 cut(s) | 89 |
| BbvI | GCAGC | 5 cut(s) | 144, 176, 592, 828, 1066 |
| BccI | CCATC | 3 cut(s) | 99, 128, 978 |
| BceAI | ACGGC | 3 cut(s) | 157, 325, 973 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 398, 432, 1061, 1095 |
| BciT130I | CCWGG | 1 cut(s) | 371 |
| BcoDI | GTCTC | 2 cut(s) | 2, 746 |
| BfaI | CTAG | 3 cut(s) | 24, 344, 401 |
| BfmI | CTRYAG | 1 cut(s) | 1038 |
| BisI | GCNGC | 9 cut(s) | 38, 133, 162, 190, 581, 672, 817, 828, 1080 |
| BlpI | GCTNAGC | 1 cut(s) | 881 |
| BlsI | GCNGC | 9 cut(s) | 39, 134, 163, 191, 582, 673, 818, 829, 1081 |
| Bme1390I | CCNGG | 1 cut(s) | 371 |
| Bme18I | GGWCC | 2 cut(s) | 658, 847 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 322 |
| BmeT110I | CYCGRG | 1 cut(s) | 320 |
| BmgT120I | GGNCC | 3 cut(s) | 354, 658, 847 |
| BmiI | GGNNCC | 2 cut(s) | 355, 660 |
| BmrFI | CCNGG | 1 cut(s) | 371 |
| BmsI | GCATC | 2 cut(s) | 582, 990 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1066, 1098 |
| Bpu10I | CCTNAGC | 1 cut(s) | 376 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 881 |
| Bpu14I | TTCGAA | 1 cut(s) | 465 |
| Bsa29I | ATCGAT | 1 cut(s) | 123 |
| BsaBI | GATNNNNATC | 1 cut(s) | 234 |
| BsaHI | GRCGYC | 2 cut(s) | 159, 183 |
| BsaJI | CCNNGG | 4 cut(s) | 319, 369, 370, 989 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 137, 149, 167, 179 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 339, 826, 1023, 1096 |
| Bse8I | GATNNNNATC | 1 cut(s) | 234 |
| BseBI | CCWGG | 1 cut(s) | 371 |
| BseCI | ATCGAT | 1 cut(s) | 123 |
| BseDI | CCNNGG | 4 cut(s) | 319, 369, 370, 989 |
| BseGI | GGATG | 2 cut(s) | 235, 736 |
| BseJI | GATNNNNATC | 1 cut(s) | 234 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 339, 826, 1023, 1096 |
| BseMII | CTCAG | 4 cut(s) | 390, 540, 750, 872 |
| BseRI | GAGGAG | 6 cut(s) | 214, 536, 621, 890, 905, 958 |
| BseSI | GKGCMC | 1 cut(s) | 89 |
| BseXI | GCAGC | 5 cut(s) | 144, 176, 592, 828, 1066 |
| BseYI | CCCAGC | 1 cut(s) | 242 |
| Bsh1236I | CGCG | 2 cut(s) | 219, 281 |
| Bsh1285I | CGRYCG | 3 cut(s) | 178, 214, 285 |
| BshFI | GGCC | 3 cut(s) | 356, 629, 1089 |
| BshVI | ATCGAT | 1 cut(s) | 123 |
| BsiEI | CGRYCG | 3 cut(s) | 178, 214, 285 |
| BsiHKAI | GWGCWC | 1 cut(s) | 89 |
| BsiHKCI | CYCGRG | 1 cut(s) | 320 |
| BsiSI | CCGG | 2 cut(s) | 584, 824 |
| BslFI | GGGAC | 2 cut(s) | 518, 644 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 339, 826, 1023, 1096 |
| BsmAI | GTCTC | 2 cut(s) | 2, 746 |
| BsmFI | GGGAC | 2 cut(s) | 518, 644 |
| BsmI | GAATGC | 1 cut(s) | 802 |
| BsnI | GGCC | 3 cut(s) | 356, 629, 1089 |
| BsoBI | CYCGRG | 1 cut(s) | 320 |
| Bsp119I | TTCGAA | 1 cut(s) | 465 |
| Bsp1286I | GDGCHC | 2 cut(s) | 89, 377 |
| Bsp143I | GATC | 5 cut(s) | 115, 202, 229, 294, 1045 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 881 |
| Bsp68I | TCGCGA | 1 cut(s) | 281 |
| BspACI | CCGC | 9 cut(s) | 38, 56, 79, 130, 162, 407, 671, 827, 835 |
| BspANI | GGCC | 3 cut(s) | 356, 629, 1089 |
| BspCNI | CTCAG | 4 cut(s) | 389, 541, 751, 873 |
| BspDI | ATCGAT | 1 cut(s) | 123 |
| BspFNI | CGCG | 2 cut(s) | 219, 281 |
| BspLI | GGNNCC | 2 cut(s) | 355, 660 |
| BspPI | GGATC | 1 cut(s) | 110 |
| BspQI | GCTCTTC | 1 cut(s) | 609 |
| BspT104I | TTCGAA | 1 cut(s) | 465 |
| BsrBI | CCGCTC | 1 cut(s) | 671 |
| BssECI | CCNNGG | 4 cut(s) | 319, 369, 370, 989 |
| BssMI | GATC | 5 cut(s) | 115, 202, 229, 294, 1045 |
| BssNAI | GTATAC | 1 cut(s) | 491 |
| BssNI | GRCGYC | 2 cut(s) | 159, 183 |
| BssSI | CACGAG | 1 cut(s) | 1083 |
| Bst1107I | GTATAC | 1 cut(s) | 491 |
| Bst2BI | CACGAG | 1 cut(s) | 1083 |
| Bst2UI | CCWGG | 1 cut(s) | 371 |
| Bst4CI | ACNGT | 7 cut(s) | 179, 215, 495, 509, 706, 954, 1128 |
| Bst6I | CTCTTC | 3 cut(s) | 212, 609, 648 |
| BstACI | GRCGYC | 2 cut(s) | 159, 183 |
| BstBI | TTCGAA | 1 cut(s) | 465 |
| BstC8I | GCNNGC | 1 cut(s) | 837 |
| BstDEI | CTNAG | 4 cut(s) | 376, 549, 759, 881 |
| BstDSI | CCRYGG | 1 cut(s) | 989 |
| BstF5I | GGATG | 2 cut(s) | 235, 736 |
| BstFNI | CGCG | 2 cut(s) | 219, 281 |
| BstHHI | GCGC | 1 cut(s) | 221 |
| BstKTI | GATC | 5 cut(s) | 118, 205, 232, 297, 1048 |
| BstMAI | GTCTC | 2 cut(s) | 2, 746 |
| BstMBI | GATC | 5 cut(s) | 115, 202, 229, 294, 1045 |
| BstMCI | CGRYCG | 3 cut(s) | 178, 214, 285 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 141, 836 |
| BstNI | CCWGG | 1 cut(s) | 371 |
| BstNSI | RCATGY | 1 cut(s) | 1014 |
| BstSCI | CCNGG | 1 cut(s) | 369 |
| BstSFI | CTRYAG | 1 cut(s) | 1038 |
| BstSLI | GKGCMC | 1 cut(s) | 89 |
| BstUI | CGCG | 2 cut(s) | 219, 281 |
| BstV1I | GCAGC | 5 cut(s) | 144, 176, 592, 828, 1066 |
| BstZ17I | GTATAC | 1 cut(s) | 491 |
| Bsu15I | ATCGAT | 1 cut(s) | 123 |
| BsuRI | GGCC | 3 cut(s) | 356, 629, 1089 |
| BsuTUI | ATCGAT | 1 cut(s) | 123 |
| BtgI | CCRYGG | 1 cut(s) | 989 |
| BtgZI | GCGATG | 1 cut(s) | 327 |
| BtsCI | GGATG | 2 cut(s) | 235, 736 |
| BtsIMutI | CAGTG | 3 cut(s) | 630, 711, 876 |
| BtuMI | TCGCGA | 1 cut(s) | 281 |
| Cac8I | GCNNGC | 1 cut(s) | 837 |
| CaiI | CAGNNNCTG | 2 cut(s) | 249, 383 |
| CfoI | GCGC | 1 cut(s) | 221 |
| Cfr13I | GGNCC | 3 cut(s) | 354, 658, 847 |
| ClaI | ATCGAT | 1 cut(s) | 123 |
| CseI | GACGC | 1 cut(s) | 167 |
| Csp6I | GTAC | 1 cut(s) | 763 |
| CviAII | CATG | 2 cut(s) | 517, 1011 |
| CviQI | GTAC | 1 cut(s) | 763 |
| DdeI | CTNAG | 4 cut(s) | 376, 549, 759, 881 |
| DpnI | GATC | 5 cut(s) | 117, 204, 231, 296, 1047 |
| DpnII | GATC | 5 cut(s) | 115, 202, 229, 294, 1045 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 182 |
| DriI | GACNNNNNGTC | 1 cut(s) | 322 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 182 |
| Eam1104I | CTCTTC | 3 cut(s) | 212, 609, 648 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 322 |
| EarI | CTCTTC | 3 cut(s) | 212, 609, 648 |
| Eco24I | GRGCYC | 1 cut(s) | 377 |
| Eco47I | GGWCC | 2 cut(s) | 658, 847 |
| Eco57I | CTGAAG | 1 cut(s) | 666 |
| Eco88I | CYCGRG | 1 cut(s) | 320 |
| EcoO109I | RGGNCCY | 2 cut(s) | 658, 847 |
| EcoRI | GAATTC | 3 cut(s) | 386, 461, 544 |
| EcoRII | CCWGG | 1 cut(s) | 369 |
| EcoT38I | GRGCYC | 1 cut(s) | 377 |
| FaeI | CATG | 2 cut(s) | 520, 1014 |
| FaiI | YATR | 9 cut(s) | 491, 518, 540, 749, 923, 1001, 1012, 1029, 1056 |
| FaqI | GGGAC | 2 cut(s) | 518, 644 |
| FatI | CATG | 2 cut(s) | 516, 1010 |
| FauI | CCCGC | 4 cut(s) | 63, 86, 137, 828 |
| FblI | GTMKAC | 1 cut(s) | 490 |
| Fnu4HI | GCNGC | 9 cut(s) | 38, 133, 162, 190, 581, 672, 817, 828, 1080 |
| FokI | GGATG | 2 cut(s) | 222, 743 |
| FriOI | GRGCYC | 1 cut(s) | 377 |
| Fsp4HI | GCNGC | 9 cut(s) | 38, 133, 162, 190, 581, 672, 817, 828, 1080 |
| FspBI | CTAG | 3 cut(s) | 24, 344, 401 |
| GlaI | GCGC | 1 cut(s) | 220 |
| GluI | GCNGC | 9 cut(s) | 38, 133, 162, 190, 581, 672, 817, 828, 1080 |
| GsaI | CCCAGC | 1 cut(s) | 246 |
| HaeIII | GGCC | 3 cut(s) | 356, 629, 1089 |
| HapII | CCGG | 2 cut(s) | 584, 824 |
| HgaI | GACGC | 1 cut(s) | 167 |
| HhaI | GCGC | 1 cut(s) | 221 |
| Hin1I | GRCGYC | 2 cut(s) | 159, 183 |
| Hin1II | CATG | 2 cut(s) | 520, 1014 |
| Hin6I | GCGC | 1 cut(s) | 219 |
| HinP1I | GCGC | 1 cut(s) | 219 |
| HpaII | CCGG | 2 cut(s) | 584, 824 |
| HphI | GGTGA | 6 cut(s) | 8, 67, 190, 314, 404, 952 |
| Hpy166II | GTNNAC | 3 cut(s) | 87, 491, 709 |
| Hpy188III | TCNNGA | 5 cut(s) | 280, 633, 718, 974, 1049 |
| Hpy8I | GTNNAC | 3 cut(s) | 87, 491, 709 |
| Hpy99I | CGWCG | 4 cut(s) | 143, 161, 219, 311 |
| HpyAV | CCTTC | 5 cut(s) | 118, 293, 479, 659, 860 |
| HpyCH4III | ACNGT | 7 cut(s) | 179, 215, 495, 509, 706, 954, 1128 |
| HpyCH4IV | ACGT | 1 cut(s) | 183 |
| HpyCH4V | TGCA | 2 cut(s) | 87, 981 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 141, 836 |
| HpyF3I | CTNAG | 4 cut(s) | 376, 549, 759, 881 |
| HpySE526I | ACGT | 1 cut(s) | 183 |
| Hsp92I | GRCGYC | 2 cut(s) | 159, 183 |
| Hsp92II | CATG | 2 cut(s) | 520, 1014 |
| HspAI | GCGC | 1 cut(s) | 219 |
| Kzo9I | GATC | 5 cut(s) | 115, 202, 229, 294, 1045 |
| LguI | GCTCTTC | 1 cut(s) | 609 |
| LmnI | GCTCC | 9 cut(s) | 140, 409, 523, 565, 668, 739, 877, 945, 1062 |
| Lsp1109I | GCAGC | 5 cut(s) | 144, 176, 592, 828, 1066 |
| LweI | GCATC | 2 cut(s) | 582, 990 |
| MaeI | CTAG | 3 cut(s) | 24, 344, 401 |
| MaeII | ACGT | 1 cut(s) | 183 |
| MaeIII | GTNAC | 4 cut(s) | 179, 196, 302, 392 |
| MalI | GATC | 5 cut(s) | 117, 204, 231, 296, 1047 |
| MbiI | CCGCTC | 1 cut(s) | 671 |
| MboI | GATC | 5 cut(s) | 115, 202, 229, 294, 1045 |
| MboII | GAAGA | 7 cut(s) | 142, 199, 569, 626, 659, 662, 665 |
| MfeI | CAATTG | 1 cut(s) | 594 |
| MhlI | GDGCHC | 2 cut(s) | 89, 377 |
| MluCI | AATT | 9 cut(s) | 287, 328, 334, 364, 386, 461, 544, 594, 712 |
| MlyI | GAGTC | 3 cut(s) | 4, 368, 443 |
| MmeI | TCCRAC | 5 cut(s) | 162, 180, 198, 411, 909 |
| MroXI | GAANNNNTTC | 1 cut(s) | 713 |
| MseI | TTAA | 1 cut(s) | 1135 |
| MspA1I | CMGCKG | 2 cut(s) | 81, 189 |
| MspI | CCGG | 2 cut(s) | 584, 824 |
| MspR9I | CCNGG | 1 cut(s) | 371 |
| MunI | CAATTG | 1 cut(s) | 594 |
| Mva1269I | GAATGC | 1 cut(s) | 802 |
| MvaI | CCWGG | 1 cut(s) | 371 |
| MvnI | CGCG | 2 cut(s) | 219, 281 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 141, 836 |
| NdeII | GATC | 5 cut(s) | 115, 202, 229, 294, 1045 |
| NlaIII | CATG | 2 cut(s) | 520, 1014 |
| NlaIV | GGNNCC | 2 cut(s) | 355, 660 |
| NmeAIII | GCCGAG | 1 cut(s) | 382 |
| NmuCI | GTSAC | 4 cut(s) | 179, 196, 302, 392 |
| NruI | TCGCGA | 1 cut(s) | 281 |
| NspI | RCATGY | 1 cut(s) | 1014 |
| NspV | TTCGAA | 1 cut(s) | 465 |
| PasI | CCCWGGG | 1 cut(s) | 370 |
| PciSI | GCTCTTC | 1 cut(s) | 609 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 165, 303, 462 |
| PctI | GAATGC | 1 cut(s) | 802 |
| PdmI | GAANNNNTTC | 1 cut(s) | 713 |
| PfeI | GAWTC | 8 cut(s) | 125, 170, 272, 440, 446, 636, 694, 1100 |
| PkrI | GCNGC | 9 cut(s) | 39, 134, 163, 191, 582, 673, 818, 829, 1081 |
| PleI | GAGTC | 3 cut(s) | 4, 367, 442 |
| PpsI | GAGTC | 3 cut(s) | 4, 367, 442 |
| PpuMI | RGGWCCY | 2 cut(s) | 658, 847 |
| Psp5II | RGGWCCY | 2 cut(s) | 658, 847 |
| Psp6I | CCWGG | 1 cut(s) | 369 |
| PspFI | CCCAGC | 1 cut(s) | 242 |
| PspGI | CCWGG | 1 cut(s) | 369 |
| PspN4I | GGNNCC | 2 cut(s) | 355, 660 |
| PspPI | GGNCC | 3 cut(s) | 354, 658, 847 |
| PspPPI | RGGWCCY | 2 cut(s) | 658, 847 |
| PstNI | CAGNNNCTG | 2 cut(s) | 249, 383 |
| PvuII | CAGCTG | 1 cut(s) | 189 |
| RruI | TCGCGA | 1 cut(s) | 281 |
| RsaI | GTAC | 1 cut(s) | 764 |
| RsaNI | GTAC | 1 cut(s) | 763 |
| SapI | GCTCTTC | 1 cut(s) | 609 |
| SaqAI | TTAA | 1 cut(s) | 1135 |
| SatI | GCNGC | 9 cut(s) | 38, 133, 162, 190, 581, 672, 817, 828, 1080 |
| Sau3AI | GATC | 5 cut(s) | 115, 202, 229, 294, 1045 |
| Sau96I | GGNCC | 3 cut(s) | 354, 658, 847 |
| SchI | GAGTC | 3 cut(s) | 4, 368, 443 |
| ScrFI | CCNGG | 1 cut(s) | 371 |
| SduI | GDGCHC | 2 cut(s) | 89, 377 |
| SfaNI | GCATC | 2 cut(s) | 582, 990 |
| SfcI | CTRYAG | 1 cut(s) | 1038 |
| SfuI | TTCGAA | 1 cut(s) | 465 |
| SinI | GGWCC | 2 cut(s) | 658, 847 |
| Sse9I | AATT | 9 cut(s) | 287, 328, 334, 364, 386, 461, 544, 594, 712 |
| SsiI | CCGC | 9 cut(s) | 38, 56, 79, 130, 162, 407, 671, 827, 835 |
| SspMI | CTAG | 3 cut(s) | 24, 344, 401 |
| StyD4I | CCNGG | 1 cut(s) | 369 |
| TaaI | ACNGT | 7 cut(s) | 179, 215, 495, 509, 706, 954, 1128 |
| TaiI | ACGT | 1 cut(s) | 186 |
| TaqI | TCGA | 7 cut(s) | 123, 210, 297, 465, 497, 576, 768 |
| TaqII | GACCGA | 1 cut(s) | 299 |
| TasI | AATT | 9 cut(s) | 287, 328, 334, 364, 386, 461, 544, 594, 712 |
| TatI | WGTACW | 1 cut(s) | 762 |
| TauI | GCSGC | 4 cut(s) | 40, 164, 674, 830 |
| TfiI | GAWTC | 8 cut(s) | 125, 170, 272, 440, 446, 636, 694, 1100 |
| Tru1I | TTAA | 1 cut(s) | 1135 |
| Tru9I | TTAA | 1 cut(s) | 1135 |
| TscAI | CASTG | 3 cut(s) | 630, 711, 876 |
| TseFI | GTSAC | 4 cut(s) | 179, 196, 302, 392 |
| TseI | GCWGC | 5 cut(s) | 132, 189, 580, 816, 1079 |
| Tsp45I | GTSAC | 4 cut(s) | 179, 196, 302, 392 |
| TspDTI | ATGAA | 3 cut(s) | 474, 505, 1071 |
| TspRI | CASTG | 3 cut(s) | 630, 711, 876 |
| VneI | GTGCAC | 1 cut(s) | 85 |
| VpaK11BI | GGWCC | 2 cut(s) | 658, 847 |
| XapI | RAATTY | 5 cut(s) | 328, 364, 386, 461, 544 |
| XceI | RCATGY | 1 cut(s) | 1014 |
| XmiI | GTMKAC | 1 cut(s) | 490 |
| XmnI | GAANNNNTTC | 1 cut(s) | 713 |
| XspI | CTAG | 3 cut(s) | 24, 344, 401 |
| ZraI | GACGTC | 1 cut(s) | 184 |