Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004656

Physical Location & Seq

Genomic Coordinates Forward (+)

5161724 .. 5163195

Gene Structure 1472 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTCGTCGGCGAAACTTTTCGGTTGTTCTATTAACGTTAACGTTGAGGCAGAGGAAGAAGAAGGCGGTGACGGTGGTAGCTCAACCAACGTGGAGGTTTCTCGATCTGGTAACCAACCGGATTGTGAAGCTATGAGTTTCTCCAATCAGATGGAAATCGGCGTTCGCAATACATATTACCAGTTTCTAGAGTCGAATTCAGATTCTGGATCGGATTCTATGTATGCAGAACCTGAATTCATCGATTTCTTCGATCGAGAGTCGTACGAGGTCGACACGGTCCGTGAGGTTTGTGTAAGTTCGAATCAGAGGGTTAGTACTCCAGGTTATTTCAATATTTGGGATCAGGATGTAGATTTAGGGCTTGGAATCGGGTTAGGTTCAAGGTCGGGTTCGGGTCAGTTACCTGGTGATTCAGGTGGGGTTGGGGTCGAAGTTGGTAGGGGTGTTACTCCTGTTGAGTATAATCTCTTTGGAGAGGAAGCTATGGTGGTTGATGAAGTATTGGAATGGGAGAATTTCAATAACGCTATCCACTTGGTTCAAGAACCTGCCTATGCTAGTATGGAGGGAGAAGAAGAAGAAGAAGAAGACGAAGTAGTAATGGAATTTGCAGCATCCATTTATAGTGATGCTTGGGAAATATTATTGTACGATAACATGACAAACTCTGCTCCTATGGATTTGGATGTTGAAGTTTGGCTAGATAGTGTAGATGGATATGCTCCTATGGATTACAATGCTATCATAGGACAAATGTTTGATAACGAGACTGGAATCAAAGGAACTCCTCCTGCATCCAAAAGTGTAGTAGATGGTCTTCCTGATGTGGAGCTTACCATTGAAGAATTGAGCAGTGTGAGCATTGTTTGCGCGATATGCAAAGATGAGGTTGTGTTTAAGGAGAAAGTTAAGAGGCTTCCTTGTAAGCATTACTATCATGGAGAGTGTATAATACCTTGGTTGGGGATAAGGAATACTTGCCCGGTTTGTCGGCATGAGCTTCCTACTGATGATCTGGAGTATGAAAGGAAGAGGAGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

348

Amino Acids

38.56

Weight (kDa)

4.08

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	291 - 332	1.9e-12	Ring finger domain
zf-C3HC4_2	PF13923	291 - 331	2.7e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	291 - 331	9.3e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	291 - 318	6.6e-07	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02340 AT3G02340 AT5G15820
fragaria_vesca	FvH4_6g46010 FvH4_6g46010 FvH4_6g46010
malus_domestica	MD09G1078100.v1.1 MD17G1068100.v1.1 MD17G1068500.v1.1
prunus_persica	Prupe.3G246300_v2.0.a1
pyrus_communis	pycom09g00500 pycom17g06870 pycom17g06880
rosa_chinensis	RchiOBHm_Chr2g0164241
rosa_laevigata	RLG00000021448
rosa_multiflora	Rmu_sc0000854.1_g000011 Rmu_sc0001427.1_g000007 Rmu_sc0004956.1_g000001 Rmu_sc0007154.1_g000003 Rmu_sc0008593.1_g000002 Rmu_sc0018459.1_g000001 Rmu_sc0041118.1_g000003
rosa_roxburghii	Rroxscaffold_2G00086690 Rroxscaffold_6G00413980
rosa_rugosa	Rorug02G0507400 Rorug07G0301000
rosa_samantha	Rh2AG575600 Rh2BG586400 Rh2CG557200 Rh2DG596000
rosa_wichuraiana	Rw2G047650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	559
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	875
AciI	CCGC	1 cut(s)	66
AclI	AACGTT	2 cut(s)	36, 42
AclWI	GGATC	2 cut(s)	217, 351
AcsI	RAATTY	4 cut(s)	196, 236, 517, 608
AfaI	GTAC	3 cut(s)	266, 319, 653
AfiI	CCNNNNNNNGG	1 cut(s)	965
AgsI	TTSAA	6 cut(s)	334, 384, 523, 545, 695, 845
AjnI	CCWGG	2 cut(s)	322, 406
AluBI	AGCT	5 cut(s)	81, 131, 485, 835, 1003
AluI	AGCT	5 cut(s)	81, 131, 485, 835, 1003
Alw26I	GTCTC	1 cut(s)	764
AlwI	GGATC	2 cut(s)	217, 351
AlwNI	CAGNNNCTG	2 cut(s)	206, 233
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	4 cut(s)	196, 236, 517, 608
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	875
AspS9I	GGNCC	1 cut(s)	280
AsuC2I	CCSGG	1 cut(s)	986
AsuHPI	GGTGA	2 cut(s)	80, 422
AsuII	TTCGAA	1 cut(s)	302
AvaII	GGWCC	1 cut(s)	280
BarI	GAAGNNNNNNTAC	2 cut(s)	804, 836
BbsI	GAAGAC	2 cut(s)	597, 812
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	3 cut(s)	145, 710, 809
BciT130I	CCWGG	2 cut(s)	324, 408
BcnI	CCSGG	1 cut(s)	986
BcoDI	GTCTC	1 cut(s)	764
BfaI	CTAG	3 cut(s)	188, 561, 704
BfuAI	ACCTGC	1 cut(s)	559
BisI	GCNGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	616
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	3 cut(s)	324, 408, 986
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmrFI	CCNGG	3 cut(s)	324, 408, 986
BmsI	GCATC	3 cut(s)	622, 626, 806
BpiI	GAAGAC	2 cut(s)	597, 812
BpmI	CTGGAG	2 cut(s)	306, 1040
Bpu14I	TTCGAA	1 cut(s)	302
BpuMI	CCSGG	1 cut(s)	986
Bsa29I	ATCGAT	1 cut(s)	243
BsaBI	GATNNNNATC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	959
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	965
Bse1I	ACTGG	2 cut(s)	181, 778
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	324, 408
BseCI	ATCGAT	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	959
BseGI	GGATG	4 cut(s)	355, 617, 694, 797
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	965
BseNI	ACTGG	2 cut(s)	181, 778
BseRI	GAGGAG	1 cut(s)	780
BseXI	GCAGC	1 cut(s)	626
Bsh1236I	CGCG	1 cut(s)	875
Bsh1285I	CGRYCG	1 cut(s)	256
BshVI	ATCGAT	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	256
BsiSI	CCGG	2 cut(s)	119, 986
BsiWI	CGTACG	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	965
BsmAI	GTCTC	1 cut(s)	764
Bsp119I	TTCGAA	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	104, 209, 253, 343, 1015
BspACI	CCGC	1 cut(s)	66
BspDI	ATCGAT	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	875
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	217, 351
BspT104I	TTCGAA	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	181, 778
BssECI	CCNNGG	1 cut(s)	959
BssMI	GATC	5 cut(s)	104, 209, 253, 343, 1015
BssT1I	CCWWGG	1 cut(s)	959
Bst2UI	CCWGG	2 cut(s)	324, 408
Bst4CI	ACNGT	2 cut(s)	74, 280
Bst6I	CTCTTC	1 cut(s)	1028
BstAPI	GCANNNNNTGC	1 cut(s)	870
BstBI	TTCGAA	1 cut(s)	302
BstEII	GGTNACC	1 cut(s)	110
BstF5I	GGATG	4 cut(s)	355, 617, 694, 797
BstFNI	CGCG	1 cut(s)	875
BstHHI	GCGC	1 cut(s)	875
BstKTI	GATC	5 cut(s)	107, 212, 256, 346, 1018
BstMAI	GTCTC	1 cut(s)	764
BstMBI	GATC	5 cut(s)	104, 209, 253, 343, 1015
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	3 cut(s)	861, 870, 879
BstNI	CCWGG	2 cut(s)	324, 408
BstPI	GGTNACC	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	322, 406, 984
BstUI	CGCG	1 cut(s)	875
BstV1I	GCAGC	1 cut(s)	626
BstV2I	GAAGAC	2 cut(s)	597, 812
BstXI	CCANNNNNNTGG	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	243
BsuTUI	ATCGAT	1 cut(s)	243
BtsCI	GGATG	4 cut(s)	355, 617, 694, 797
BtsI	GCAGTG	1 cut(s)	862
BtsIMutI	CAGTG	1 cut(s)	862
BveI	ACCTGC	1 cut(s)	559
CaiI	CAGNNNCTG	2 cut(s)	206, 233
CfoI	GCGC	1 cut(s)	875
Cfr13I	GGNCC	1 cut(s)	280
ClaI	ATCGAT	1 cut(s)	243
CpoI	CGGWCCG	1 cut(s)	280
CsiI	ACCWGGT	1 cut(s)	406
Csp6I	GTAC	3 cut(s)	265, 318, 652
CspCI	CAANNNNNGTGG	2 cut(s)	72, 107
CspI	CGGWCCG	1 cut(s)	280
CviAII	CATG	4 cut(s)	661, 941, 998, 1044
CviJI	RGCY	8 cut(s)	81, 131, 364, 485, 703, 835, 919, 1003
CviKI_1	RGCY	8 cut(s)	81, 131, 364, 485, 703, 835, 919, 1003
CviQI	GTAC	3 cut(s)	265, 318, 652
DpnI	GATC	5 cut(s)	106, 211, 255, 345, 1017
DpnII	GATC	5 cut(s)	104, 209, 253, 343, 1015
Eam1104I	CTCTTC	1 cut(s)	1028
EarI	CTCTTC	1 cut(s)	1028
Eco130I	CCWWGG	1 cut(s)	959
Eco47I	GGWCC	1 cut(s)	280
Eco91I	GGTNACC	1 cut(s)	110
EcoO65I	GGTNACC	1 cut(s)	110
EcoRI	GAATTC	2 cut(s)	196, 236
EcoRII	CCWGG	2 cut(s)	322, 406
EcoT14I	CCWWGG	1 cut(s)	959
ErhI	CCWWGG	1 cut(s)	959
FaeI	CATG	4 cut(s)	664, 944, 1001, 1047
FalI	AAGNNNNNCTT	2 cut(s)	964, 996
FatI	CATG	4 cut(s)	660, 940, 997, 1043
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	1 cut(s)	615
FokI	GGATG	4 cut(s)	362, 604, 701, 784
Fsp4HI	GCNGC	1 cut(s)	615
FspBI	CTAG	3 cut(s)	188, 561, 704
GlaI	GCGC	1 cut(s)	874
GluI	GCNGC	1 cut(s)	615
GsuI	CTGGAG	2 cut(s)	306, 1040
HapII	CCGG	2 cut(s)	119, 986
HhaI	GCGC	1 cut(s)	875
Hin1II	CATG	4 cut(s)	664, 944, 1001, 1047
Hin6I	GCGC	1 cut(s)	873
HinP1I	GCGC	1 cut(s)	873
HincII	GTYRAC	2 cut(s)	40, 274
HindII	GTYRAC	2 cut(s)	40, 274
HinfI	GANTC	8 cut(s)	191, 203, 215, 260, 304, 369, 413, 777
HpaI	GTTAAC	1 cut(s)	40
HpaII	CCGG	2 cut(s)	119, 986
HphI	GGTGA	2 cut(s)	80, 422
Hpy166II	GTNNAC	2 cut(s)	40, 274
Hpy188I	TCNGA	4 cut(s)	150, 202, 214, 309
Hpy188III	TCNNGA	8 cut(s)	102, 188, 207, 257, 347, 545, 824, 1019
Hpy8I	GTNNAC	2 cut(s)	40, 274
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	2 cut(s)	74, 280
HpyCH4IV	ACGT	3 cut(s)	36, 42, 90
HpyCH4V	TGCA	4 cut(s)	227, 614, 797, 882
HpyF10VI	GCNNNNNNNGC	3 cut(s)	861, 870, 879
HpySE526I	ACGT	3 cut(s)	36, 42, 90
Hsp92II	CATG	4 cut(s)	664, 944, 1001, 1047
HspAI	GCGC	1 cut(s)	873
KspAI	GTTAAC	1 cut(s)	40
Kzo9I	GATC	5 cut(s)	104, 209, 253, 343, 1015
LmnI	GCTCC	3 cut(s)	679, 730, 832
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	3 cut(s)	622, 626, 806
MabI	ACCWGGT	1 cut(s)	406
MaeI	CTAG	3 cut(s)	188, 561, 704
MaeII	ACGT	3 cut(s)	36, 42, 90
MaeIII	GTNAC	4 cut(s)	68, 110, 402, 448
MalI	GATC	5 cut(s)	106, 211, 255, 345, 1017
MboI	GATC	5 cut(s)	104, 209, 253, 343, 1015
MluCI	AATT	5 cut(s)	196, 236, 517, 608, 848
MlyI	GAGTC	2 cut(s)	200, 269
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	4 cut(s)	33, 39, 900, 912
MspI	CCGG	2 cut(s)	119, 986
MspR9I	CCNGG	3 cut(s)	324, 408, 986
MvaI	CCWGG	2 cut(s)	324, 408
MvnI	CGCG	1 cut(s)	875
MwoI	GCNNNNNNNGC	3 cut(s)	861, 870, 879
NciI	CCSGG	1 cut(s)	986
NdeII	GATC	5 cut(s)	104, 209, 253, 343, 1015
NlaIII	CATG	4 cut(s)	664, 944, 1001, 1047
NmuCI	GTSAC	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	6 cut(s)	203, 215, 304, 369, 413, 777
Pfl23II	CGTACG	1 cut(s)	264
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	616
Ple19I	CGATCG	1 cut(s)	256
PleI	GAGTC	2 cut(s)	199, 268
PpsI	GAGTC	2 cut(s)	199, 268
Psp1406I	AACGTT	2 cut(s)	36, 42
Psp6I	CCWGG	2 cut(s)	322, 406
PspEI	GGTNACC	1 cut(s)	110
PspGI	CCWGG	2 cut(s)	322, 406
PspLI	CGTACG	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	280
PstNI	CAGNNNCTG	2 cut(s)	206, 233
PsyI	GACNNNGTC	1 cut(s)	278
PvuI	CGATCG	1 cut(s)	256
RsaI	GTAC	3 cut(s)	266, 319, 653
RsaNI	GTAC	3 cut(s)	265, 318, 652
Rsr2I	CGGWCCG	1 cut(s)	280
RsrII	CGGWCCG	1 cut(s)	280
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	4 cut(s)	33, 39, 900, 912
SatI	GCNGC	1 cut(s)	615
Sau3AI	GATC	5 cut(s)	104, 209, 253, 343, 1015
Sau96I	GGNCC	1 cut(s)	280
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	2 cut(s)	200, 269
ScrFI	CCNGG	3 cut(s)	324, 408, 986
SexAI	ACCWGGT	1 cut(s)	406
SfaNI	GCATC	3 cut(s)	622, 626, 806
SfuI	TTCGAA	1 cut(s)	302
SinI	GGWCC	1 cut(s)	280
Sse9I	AATT	5 cut(s)	196, 236, 517, 608, 848
SsiI	CCGC	1 cut(s)	66
SspI	AATATT	2 cut(s)	337, 645
SspMI	CTAG	3 cut(s)	188, 561, 704
StyD4I	CCNGG	3 cut(s)	322, 406, 984
StyI	CCWWGG	1 cut(s)	959
TaaI	ACNGT	2 cut(s)	74, 280
TaiI	ACGT	3 cut(s)	39, 45, 93
TaqI	TCGA	8 cut(s)	103, 194, 243, 252, 256, 273, 302, 432
TasI	AATT	5 cut(s)	196, 236, 517, 608, 848
TatI	WGTACW	1 cut(s)	317
TfiI	GAWTC	6 cut(s)	203, 215, 304, 369, 413, 777
Tru1I	TTAA	4 cut(s)	33, 39, 900, 912
Tru9I	TTAA	4 cut(s)	33, 39, 900, 912
TscAI	CASTG	1 cut(s)	862
TseFI	GTSAC	1 cut(s)	68
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	1 cut(s)	68
TspDTI	ATGAA	3 cut(s)	229, 513, 1041
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	862
Tth111I	GACNNNGTC	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	4 cut(s)	196, 236, 517, 608
XbaI	TCTAGA	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	17
XspI	CTAG	3 cut(s)	188, 561, 704
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.