FvH4_6g46010

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
35181064 .. 35183830
2767 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46010.t1

Sequence Viewer

Length: 1095 bp
ATGTCCGAGACTCGTCACCTACCTAGCGAACCAGAGCCACCAAACGAACCCGACCCGACCCAACTCACCCGCTGGTGCACCAATCACAACTTCAACCCCTTCGCCGATCCCATCGACTCCCGAAGCTCCGACGGCGACTGGTTCTCCGACGCCGCCGACGACTCCGACCGTGACGTCAGCTGCTTCGTCACCGATCTTTTCGACCGTCGCGACTCCGATCACCCTATCGGCGCCGACTGCGTTCTCGTCTCGGGTTCGGATCCGTTCGTGACGGAATTGGAGACCCAACGTGACGATGGCGATGATCTCGGGTCAAATTCCAATTTGGGGCTAGGGTTTGGGGCCGAGTCAAATTGTCAGGGATCCGGCTCCGAATTCGATGACTTTTTAGCTCCGCAAGGGCTTAGGGTTGTCGGATTGGAGTCCGATTCGGATTCGGAGAATGATGAATTCGAGAGTAATCGGGTCAGCGAAGGTATCCAGTCGATTTGGGACAGTATTTTCATGGAGGAGCAGAGAAATGCGTATGAGAATTCTGAGTGGGAAGAGGTGACTGAGCAGCCGGAGAATCCAATTGACGGCGGAGGAGGAGGAGGAGGCGGAGTGGAAGAGCTATCAGTGGCCTCTGGATTCACTAGTGAAGAAGAAGAGATCCCCGAAGGAGCGGTGCGAACCATTGAGTGGGAAATTCTACTGACAGTGAACAATTTCAGGAGGAATGTGGATGATGTGGAGCTTGATATAGAGACTGCCGAGTACATTGAAGCGATTTTCGGGCAGTTTGTGGAGAATGCTAGCGCTTGTAAAGGCAGCCCTCCCGCGGCGCTGCGAGTTGTGGAAGACCTTCCTTTTGTGAAGTTTACGGTGGAGGAGCTGAGCAAGGAGGAGGTGGTTTGTGCTGTTTGTAAAGATGATATAGTGTTGGAGGATAAGGTGAGGAGCTTGCCGTGTTGTCATTATTACCATCAGGACTGCATTGTGCCGTGGTTGAGCATTCGGAATACGTGCCCTGTGTGTCGGTATGAGTTGCCAACGGATGATCTGGATTACGAGAGGAGCAGGGCTGCTCGTGGCTTGTCATGGGAATCACAGTAG

Protein Analysis

365

Amino Acids

40.48

Weight (kDa)

4.05

Isoelectric Point (pI)

63.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 299 - 340 1.2e-11 Ring finger domain
zf-C3HC4_2 PF13923 299 - 339 2.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 299 - 326 6.2e-07 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 173
AatII GACGTC 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 681
AccBSI CCGCTC 1 cut(s) 665
AccII CGCG 2 cut(s) 210, 821
AciI CCGC 8 cut(s) 70, 153, 395, 582, 600, 665, 819, 821
AclWI GGATC 6 cut(s) 101, 254, 267, 357, 370, 646
AcsI RAATTY 5 cut(s) 316, 374, 449, 532, 687
AcyI GRCGYC 3 cut(s) 150, 174, 231
AfaI GTAC 1 cut(s) 758
AfeI AGCGCT 1 cut(s) 799
AfiI CCNNNNNNNGG 4 cut(s) 327, 578, 681, 820
AgsI TTSAA 2 cut(s) 94, 764
AhlI ACTAGT 1 cut(s) 635
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 7 cut(s) 126, 180, 392, 613, 736, 874, 942
AluI AGCT 7 cut(s) 126, 180, 392, 613, 736, 874, 942
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 4 cut(s) 2, 253, 275, 740
Alw44I GTGCAC 1 cut(s) 76
AlwI GGATC 6 cut(s) 101, 254, 267, 357, 370, 646
Ama87I CYCGRG 2 cut(s) 250, 308
Aor51HI AGCGCT 1 cut(s) 799
AoxI GGCC 2 cut(s) 342, 621
ApaLI GTGCAC 1 cut(s) 76
ApeKI GCWGC 5 cut(s) 180, 559, 810, 826, 1064
ApoI RAATTY 5 cut(s) 316, 374, 449, 532, 687
ArsI GACNNNNNNTTYG 2 cut(s) 833, 865
Asp700I GAANNNNTTC 2 cut(s) 707, 843
AspLEI GCGC 3 cut(s) 233, 800, 826
AspS9I GGNCC 1 cut(s) 342
AsuHPI GGTGA 6 cut(s) 8, 58, 181, 212, 562, 946
AsuNHI GCTAGC 1 cut(s) 794
AvaI CYCGRG 2 cut(s) 250, 308
BaeGI GKGCMC 2 cut(s) 80, 1010
BamHI GGATCC 2 cut(s) 259, 362
BanI GGYRCC 1 cut(s) 230
BauI CACGAG 1 cut(s) 1068
BbsI GAAGAC 1 cut(s) 846
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 5 cut(s) 167, 571, 813, 822, 1051
BccI CCATC 3 cut(s) 119, 290, 972
BceAI ACGGC 4 cut(s) 148, 595, 931, 967
BciVI GTATCC 1 cut(s) 488
BcoDI GTCTC 4 cut(s) 2, 253, 275, 740
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 4 cut(s) 24, 332, 636, 795
BfoI RGCGCY 3 cut(s) 234, 801, 827
BfuI GTATCC 1 cut(s) 488
BisI GCNGC 7 cut(s) 153, 181, 560, 811, 822, 827, 1065
BlpI GCTNAGC 1 cut(s) 875
BlsI GCNGC 7 cut(s) 154, 182, 561, 812, 823, 828, 1066
BmeT110I CYCGRG 2 cut(s) 250, 308
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 5 cut(s) 232, 261, 343, 364, 370
BmtI GCTAGC 1 cut(s) 798
BpiI GAAGAC 1 cut(s) 846
Bpu10I CCTNAGC 1 cut(s) 404
Bpu1102I GCTNAGC 1 cut(s) 875
BsaAI YACGTR 1 cut(s) 1005
BsaHI GRCGYC 3 cut(s) 150, 174, 231
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 819, 983
BsaXI ACNNNNNCTCC 4 cut(s) 128, 158, 588, 618
Bsc4I CCNNNNNNNGG 4 cut(s) 327, 578, 681, 820
Bse1I ACTGG 2 cut(s) 143, 481
BseDI CCNNGG 2 cut(s) 819, 983
BseGI GGATG 2 cut(s) 730, 1042
BseLI CCNNNNNNNGG 4 cut(s) 327, 578, 681, 820
BseMII CTCAG 3 cut(s) 528, 546, 866
BseNI ACTGG 2 cut(s) 143, 481
BseRI GAGGAG 9 cut(s) 524, 600, 603, 606, 609, 884, 899, 952, 1069
BseSI GKGCMC 2 cut(s) 80, 1010
BseXI GCAGC 5 cut(s) 167, 571, 813, 822, 1051
Bsh1236I CGCG 2 cut(s) 210, 821
Bsh1285I CGRYCG 2 cut(s) 169, 205
BshFI GGCC 2 cut(s) 344, 623
BshNI GGYRCC 1 cut(s) 230
BsiEI CGRYCG 2 cut(s) 169, 205
BsiHKAI GWGCWC 1 cut(s) 80
BsiHKCI CYCGRG 2 cut(s) 250, 308
BsiSI CCGG 2 cut(s) 366, 563
BslFI GGGAC 1 cut(s) 506
BslI CCNNNNNNNGG 4 cut(s) 327, 578, 681, 820
BsmAI GTCTC 4 cut(s) 2, 253, 275, 740
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 506
BsmI GAATGC 2 cut(s) 796, 993
BsnI GGCC 2 cut(s) 344, 623
Bso31I GGTCTC 1 cut(s) 275
BsoBI CYCGRG 2 cut(s) 250, 308
Bsp1286I GDGCHC 2 cut(s) 80, 1010
Bsp143I GATC 8 cut(s) 106, 193, 217, 259, 304, 362, 651, 1039
Bsp1720I GCTNAGC 1 cut(s) 875
Bsp68I TCGCGA 1 cut(s) 210
BspACI CCGC 8 cut(s) 70, 153, 395, 582, 600, 665, 819, 821
BspANI GGCC 2 cut(s) 344, 623
BspCNI CTCAG 3 cut(s) 529, 547, 867
BspFNI CGCG 2 cut(s) 210, 821
BspLI GGNNCC 5 cut(s) 232, 261, 343, 364, 370
BspOI GCTAGC 1 cut(s) 798
BspPI GGATC 6 cut(s) 101, 254, 267, 357, 370, 646
BspQI GCTCTTC 1 cut(s) 603
BspT107I GGYRCC 1 cut(s) 230
BspTNI GGTCTC 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 665
BsrI ACTGG 2 cut(s) 143, 481
BssECI CCNNGG 2 cut(s) 819, 983
BssMI GATC 8 cut(s) 106, 193, 217, 259, 304, 362, 651, 1039
BssNI GRCGYC 3 cut(s) 150, 174, 231
BssSI CACGAG 1 cut(s) 1068
Bst2BI CACGAG 1 cut(s) 1068
Bst4CI ACNGT 6 cut(s) 170, 206, 497, 700, 865, 1092
Bst6I CTCTTC 3 cut(s) 540, 603, 642
BstACI GRCGYC 3 cut(s) 150, 174, 231
BstBAI YACGTR 1 cut(s) 1005
BstC8I GCNNGC 2 cut(s) 796, 944
BstDEI CTNAG 4 cut(s) 404, 537, 555, 875
BstDSI CCRYGG 2 cut(s) 819, 983
BstF5I GGATG 2 cut(s) 730, 1042
BstFNI CGCG 2 cut(s) 210, 821
BstH2I RGCGCY 3 cut(s) 234, 801, 827
BstHHI GCGC 3 cut(s) 233, 800, 826
BstKTI GATC 8 cut(s) 109, 196, 220, 262, 307, 365, 654, 1042
BstMAI GTCTC 4 cut(s) 2, 253, 275, 740
BstMBI GATC 8 cut(s) 106, 193, 217, 259, 304, 362, 651, 1039
BstMCI CGRYCG 2 cut(s) 169, 205
BstMWI GCNNNNNNNGC 2 cut(s) 132, 237
BstSLI GKGCMC 2 cut(s) 80, 1010
BstUI CGCG 2 cut(s) 210, 821
BstV1I GCAGC 5 cut(s) 167, 571, 813, 822, 1051
BstV2I GAAGAC 1 cut(s) 846
BstX2I RGATCY 3 cut(s) 259, 362, 651
BstYI RGATCY 3 cut(s) 259, 362, 651
BsuI GTATCC 1 cut(s) 488
BsuRI GGCC 2 cut(s) 344, 623
BtgI CCRYGG 2 cut(s) 819, 983
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 2 cut(s) 730, 1042
BtsIMutI CAGTG 2 cut(s) 624, 705
BtuMI TCGCGA 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 796, 944
CfoI GCGC 3 cut(s) 233, 800, 826
Cfr13I GGNCC 1 cut(s) 342
Cfr42I CCGCGG 1 cut(s) 822
CseI GACGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 757
CviAII CATG 2 cut(s) 505, 1080
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 4 cut(s) 404, 537, 555, 875
DinI GGCGCC 1 cut(s) 232
DpnI GATC 8 cut(s) 108, 195, 219, 261, 306, 364, 653, 1041
DpnII GATC 8 cut(s) 106, 193, 217, 259, 304, 362, 651, 1039
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
Eam1104I CTCTTC 3 cut(s) 540, 603, 642
EarI CTCTTC 3 cut(s) 540, 603, 642
EciI GGCGGA 2 cut(s) 597, 615
Eco31I GGTCTC 1 cut(s) 275
Eco47III AGCGCT 1 cut(s) 799
Eco88I CYCGRG 2 cut(s) 250, 308
EcoRI GAATTC 3 cut(s) 374, 449, 532
EgeI GGCGCC 1 cut(s) 232
EheI GGCGCC 1 cut(s) 232
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 2 cut(s) 508, 1083
FaiI YATR 6 cut(s) 506, 528, 743, 917, 1023, 1081
FaqI GGGAC 1 cut(s) 506
FatI CATG 2 cut(s) 504, 1079
FauI CCCGC 2 cut(s) 77, 826
Fnu4HI GCNGC 7 cut(s) 153, 181, 560, 811, 822, 827, 1065
FokI GGATG 2 cut(s) 737, 1049
Fsp4HI GCNGC 7 cut(s) 153, 181, 560, 811, 822, 827, 1065
FspBI CTAG 4 cut(s) 24, 332, 636, 795
GlaI GCGC 3 cut(s) 232, 799, 825
GluI GCNGC 7 cut(s) 153, 181, 560, 811, 822, 827, 1065
HaeII RGCGCY 3 cut(s) 234, 801, 827
HaeIII GGCC 2 cut(s) 344, 623
HapII CCGG 2 cut(s) 366, 563
HgaI GACGC 1 cut(s) 158
HhaI GCGC 3 cut(s) 233, 800, 826
Hin1I GRCGYC 3 cut(s) 150, 174, 231
Hin1II CATG 2 cut(s) 508, 1083
Hin6I GCGC 3 cut(s) 231, 798, 824
HinP1I GCGC 3 cut(s) 231, 798, 824
HpaII CCGG 2 cut(s) 366, 563
HphI GGTGA 6 cut(s) 8, 58, 181, 212, 562, 946
Hpy166II GTNNAC 3 cut(s) 78, 703, 861
Hpy188III TCNNGA 8 cut(s) 120, 209, 268, 454, 627, 712, 968, 1043
Hpy8I GTNNAC 3 cut(s) 78, 703, 861
Hpy99I CGWCG 4 cut(s) 134, 152, 161, 210
HpyAV CCTTC 4 cut(s) 109, 467, 653, 854
HpyCH4III ACNGT 6 cut(s) 170, 206, 497, 700, 865, 1092
HpyCH4IV ACGT 3 cut(s) 174, 289, 1004
HpyCH4V TGCA 2 cut(s) 78, 975
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 237
HpyF3I CTNAG 4 cut(s) 404, 537, 555, 875
HpySE526I ACGT 3 cut(s) 174, 289, 1004
Hsp92I GRCGYC 3 cut(s) 150, 174, 231
Hsp92II CATG 2 cut(s) 508, 1083
HspAI GCGC 3 cut(s) 231, 798, 824
KasI GGCGCC 1 cut(s) 230
KspI CCGCGG 1 cut(s) 822
Kzo9I GATC 8 cut(s) 106, 193, 217, 259, 304, 362, 651, 1039
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 9 cut(s) 131, 374, 397, 511, 662, 733, 871, 939, 1056
Lsp1109I GCAGC 5 cut(s) 167, 571, 813, 822, 1051
MaeI CTAG 4 cut(s) 24, 332, 636, 795
MaeII ACGT 3 cut(s) 174, 289, 1004
MaeIII GTNAC 6 cut(s) 14, 170, 187, 268, 290, 550
MalI GATC 8 cut(s) 108, 195, 219, 261, 306, 364, 653, 1041
MbiI CCGCTC 1 cut(s) 665
MboI GATC 8 cut(s) 106, 193, 217, 259, 304, 362, 651, 1039
MboII GAAGA 6 cut(s) 557, 620, 653, 656, 659, 851
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 3 cut(s) 259, 362, 651
MhlI GDGCHC 2 cut(s) 80, 1010
Mly113I GGCGCC 1 cut(s) 231
MlyI GAGTC 6 cut(s) 4, 110, 155, 206, 356, 431
MmeI TCCRAC 5 cut(s) 153, 171, 189, 394, 903
MroXI GAANNNNTTC 2 cut(s) 707, 843
MspA1I CMGCKG 3 cut(s) 72, 180, 821
MspI CCGG 2 cut(s) 366, 563
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 2 cut(s) 796, 993
MvnI CGCG 2 cut(s) 210, 821
MwoI GCNNNNNNNGC 2 cut(s) 132, 237
NarI GGCGCC 1 cut(s) 231
NdeII GATC 8 cut(s) 106, 193, 217, 259, 304, 362, 651, 1039
NheI GCTAGC 1 cut(s) 794
NlaIII CATG 2 cut(s) 508, 1083
NlaIV GGNNCC 5 cut(s) 232, 261, 343, 364, 370
NmeAIII GCCGAG 2 cut(s) 370, 778
NmuCI GTSAC 6 cut(s) 14, 170, 187, 268, 290, 550
NruI TCGCGA 1 cut(s) 210
PciSI GCTCTTC 1 cut(s) 603
PcsI WCGNNNNNNNCGW 2 cut(s) 156, 207
PctI GAATGC 2 cut(s) 796, 993
PdmI GAANNNNTTC 2 cut(s) 707, 843
PfeI GAWTC 5 cut(s) 428, 434, 568, 630, 1085
PflMI CCANNNNNTGG 1 cut(s) 681
PkrI GCNGC 7 cut(s) 154, 182, 561, 812, 823, 828, 1066
PleI GAGTC 6 cut(s) 4, 110, 155, 206, 355, 430
PluTI GGCGCC 1 cut(s) 234
PpsI GAGTC 6 cut(s) 4, 110, 155, 206, 355, 430
Ppu21I YACGTR 1 cut(s) 1005
PspN4I GGNNCC 5 cut(s) 232, 261, 343, 364, 370
PspPI GGNCC 1 cut(s) 342
PsuI RGATCY 3 cut(s) 259, 362, 651
PvuII CAGCTG 1 cut(s) 180
RruI TCGCGA 1 cut(s) 210
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
SacII CCGCGG 1 cut(s) 822
SapI GCTCTTC 1 cut(s) 603
SatI GCNGC 7 cut(s) 153, 181, 560, 811, 822, 827, 1065
Sau3AI GATC 8 cut(s) 106, 193, 217, 259, 304, 362, 651, 1039
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 6 cut(s) 4, 110, 155, 206, 356, 431
SduI GDGCHC 2 cut(s) 80, 1010
SfoI GGCGCC 1 cut(s) 232
Sfr303I CCGCGG 1 cut(s) 822
SgrBI CCGCGG 1 cut(s) 822
SpeI ACTAGT 1 cut(s) 635
SsiI CCGC 8 cut(s) 70, 153, 395, 582, 600, 665, 819, 821
SspDI GGCGCC 1 cut(s) 230
SspMI CTAG 4 cut(s) 24, 332, 636, 795
TaaI ACNGT 6 cut(s) 170, 206, 497, 700, 865, 1092
TaiI ACGT 3 cut(s) 177, 292, 1007
TaqI TCGA 5 cut(s) 114, 201, 378, 453, 485
TatI WGTACW 1 cut(s) 756
TauI GCSGC 2 cut(s) 155, 824
TfiI GAWTC 5 cut(s) 428, 434, 568, 630, 1085
TscAI CASTG 2 cut(s) 624, 705
TseFI GTSAC 6 cut(s) 14, 170, 187, 268, 290, 550
TseI GCWGC 5 cut(s) 180, 559, 810, 826, 1064
Tsp45I GTSAC 6 cut(s) 14, 170, 187, 268, 290, 550
TspDTI ATGAA 2 cut(s) 462, 493
TspGWI ACGGA 3 cut(s) 252, 287, 1049
TspRI CASTG 2 cut(s) 624, 705
Van91I CCANNNNNTGG 1 cut(s) 681
VneI GTGCAC 1 cut(s) 76
XapI RAATTY 5 cut(s) 316, 374, 449, 532, 687
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XmnI GAANNNNTTC 2 cut(s) 707, 843
XspI CTAG 4 cut(s) 24, 332, 636, 795
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.