E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02340 AT3G02340 AT5G15820 |
| fragaria_vesca | FvH4_6g46010 FvH4_6g46010 FvH4_6g46010 |
| malus_domestica | MD09G1078100.v1.1 MD17G1068100.v1.1 MD17G1068500.v1.1 |
| prunus_persica | Prupe.3G246300_v2.0.a1 |
| pyrus_communis | pycom09g00500 pycom17g06870 pycom17g06880 |
| rosa_chinensis | RchiOBHm_Chr2g0164241 |
| rosa_laevigata | RLG00000021448 |
| rosa_multiflora | Rmu_sc0000854.1_g000011 Rmu_sc0001427.1_g000007 Rmu_sc0004956.1_g000001 Rmu_sc0007154.1_g000003 Rmu_sc0008593.1_g000002 Rmu_sc0018459.1_g000001 Rmu_sc0041118.1_g000003 |
| rosa_roxburghii | Rroxscaffold_2G00086690 Rroxscaffold_6G00413980 |
| rosa_rugosa | Rorug02G0507400 Rorug07G0301000 |
| rosa_samantha | Rh2AG575600 Rh2BG586400 Rh2CG557200 Rh2DG596000 |
| rosa_wichuraiana | Rw2G047650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 173 |
| AatII | GACGTC | 1 cut(s) | 177 |
| AccB1I | GGYRCC | 1 cut(s) | 230 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 681 |
| AccBSI | CCGCTC | 1 cut(s) | 665 |
| AccII | CGCG | 2 cut(s) | 210, 821 |
| AciI | CCGC | 8 cut(s) | 70, 153, 395, 582, 600, 665, 819, 821 |
| AclWI | GGATC | 6 cut(s) | 101, 254, 267, 357, 370, 646 |
| AcsI | RAATTY | 5 cut(s) | 316, 374, 449, 532, 687 |
| AcyI | GRCGYC | 3 cut(s) | 150, 174, 231 |
| AfaI | GTAC | 1 cut(s) | 758 |
| AfeI | AGCGCT | 1 cut(s) | 799 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 327, 578, 681, 820 |
| AgsI | TTSAA | 2 cut(s) | 94, 764 |
| AhlI | ACTAGT | 1 cut(s) | 635 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 74, 106 |
| AluBI | AGCT | 7 cut(s) | 126, 180, 392, 613, 736, 874, 942 |
| AluI | AGCT | 7 cut(s) | 126, 180, 392, 613, 736, 874, 942 |
| Alw21I | GWGCWC | 1 cut(s) | 80 |
| Alw26I | GTCTC | 4 cut(s) | 2, 253, 275, 740 |
| Alw44I | GTGCAC | 1 cut(s) | 76 |
| AlwI | GGATC | 6 cut(s) | 101, 254, 267, 357, 370, 646 |
| Ama87I | CYCGRG | 2 cut(s) | 250, 308 |
| Aor51HI | AGCGCT | 1 cut(s) | 799 |
| AoxI | GGCC | 2 cut(s) | 342, 621 |
| ApaLI | GTGCAC | 1 cut(s) | 76 |
| ApeKI | GCWGC | 5 cut(s) | 180, 559, 810, 826, 1064 |
| ApoI | RAATTY | 5 cut(s) | 316, 374, 449, 532, 687 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 833, 865 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 707, 843 |
| AspLEI | GCGC | 3 cut(s) | 233, 800, 826 |
| AspS9I | GGNCC | 1 cut(s) | 342 |
| AsuHPI | GGTGA | 6 cut(s) | 8, 58, 181, 212, 562, 946 |
| AsuNHI | GCTAGC | 1 cut(s) | 794 |
| AvaI | CYCGRG | 2 cut(s) | 250, 308 |
| BaeGI | GKGCMC | 2 cut(s) | 80, 1010 |
| BamHI | GGATCC | 2 cut(s) | 259, 362 |
| BanI | GGYRCC | 1 cut(s) | 230 |
| BauI | CACGAG | 1 cut(s) | 1068 |
| BbsI | GAAGAC | 1 cut(s) | 846 |
| Bbv12I | GWGCWC | 1 cut(s) | 80 |
| BbvI | GCAGC | 5 cut(s) | 167, 571, 813, 822, 1051 |
| BccI | CCATC | 3 cut(s) | 119, 290, 972 |
| BceAI | ACGGC | 4 cut(s) | 148, 595, 931, 967 |
| BciVI | GTATCC | 1 cut(s) | 488 |
| BcoDI | GTCTC | 4 cut(s) | 2, 253, 275, 740 |
| BcuI | ACTAGT | 1 cut(s) | 635 |
| BfaI | CTAG | 4 cut(s) | 24, 332, 636, 795 |
| BfoI | RGCGCY | 3 cut(s) | 234, 801, 827 |
| BfuI | GTATCC | 1 cut(s) | 488 |
| BisI | GCNGC | 7 cut(s) | 153, 181, 560, 811, 822, 827, 1065 |
| BlpI | GCTNAGC | 1 cut(s) | 875 |
| BlsI | GCNGC | 7 cut(s) | 154, 182, 561, 812, 823, 828, 1066 |
| BmeT110I | CYCGRG | 2 cut(s) | 250, 308 |
| BmgT120I | GGNCC | 1 cut(s) | 342 |
| BmiI | GGNNCC | 5 cut(s) | 232, 261, 343, 364, 370 |
| BmtI | GCTAGC | 1 cut(s) | 798 |
| BpiI | GAAGAC | 1 cut(s) | 846 |
| Bpu10I | CCTNAGC | 1 cut(s) | 404 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 875 |
| BsaAI | YACGTR | 1 cut(s) | 1005 |
| BsaHI | GRCGYC | 3 cut(s) | 150, 174, 231 |
| BsaI | GGTCTC | 1 cut(s) | 275 |
| BsaJI | CCNNGG | 2 cut(s) | 819, 983 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 128, 158, 588, 618 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 327, 578, 681, 820 |
| Bse1I | ACTGG | 2 cut(s) | 143, 481 |
| BseDI | CCNNGG | 2 cut(s) | 819, 983 |
| BseGI | GGATG | 2 cut(s) | 730, 1042 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 327, 578, 681, 820 |
| BseMII | CTCAG | 3 cut(s) | 528, 546, 866 |
| BseNI | ACTGG | 2 cut(s) | 143, 481 |
| BseRI | GAGGAG | 9 cut(s) | 524, 600, 603, 606, 609, 884, 899, 952, 1069 |
| BseSI | GKGCMC | 2 cut(s) | 80, 1010 |
| BseXI | GCAGC | 5 cut(s) | 167, 571, 813, 822, 1051 |
| Bsh1236I | CGCG | 2 cut(s) | 210, 821 |
| Bsh1285I | CGRYCG | 2 cut(s) | 169, 205 |
| BshFI | GGCC | 2 cut(s) | 344, 623 |
| BshNI | GGYRCC | 1 cut(s) | 230 |
| BsiEI | CGRYCG | 2 cut(s) | 169, 205 |
| BsiHKAI | GWGCWC | 1 cut(s) | 80 |
| BsiHKCI | CYCGRG | 2 cut(s) | 250, 308 |
| BsiSI | CCGG | 2 cut(s) | 366, 563 |
| BslFI | GGGAC | 1 cut(s) | 506 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 327, 578, 681, 820 |
| BsmAI | GTCTC | 4 cut(s) | 2, 253, 275, 740 |
| BsmBI | CGTCTC | 1 cut(s) | 253 |
| BsmFI | GGGAC | 1 cut(s) | 506 |
| BsmI | GAATGC | 2 cut(s) | 796, 993 |
| BsnI | GGCC | 2 cut(s) | 344, 623 |
| Bso31I | GGTCTC | 1 cut(s) | 275 |
| BsoBI | CYCGRG | 2 cut(s) | 250, 308 |
| Bsp1286I | GDGCHC | 2 cut(s) | 80, 1010 |
| Bsp143I | GATC | 8 cut(s) | 106, 193, 217, 259, 304, 362, 651, 1039 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 875 |
| Bsp68I | TCGCGA | 1 cut(s) | 210 |
| BspACI | CCGC | 8 cut(s) | 70, 153, 395, 582, 600, 665, 819, 821 |
| BspANI | GGCC | 2 cut(s) | 344, 623 |
| BspCNI | CTCAG | 3 cut(s) | 529, 547, 867 |
| BspFNI | CGCG | 2 cut(s) | 210, 821 |
| BspLI | GGNNCC | 5 cut(s) | 232, 261, 343, 364, 370 |
| BspOI | GCTAGC | 1 cut(s) | 798 |
| BspPI | GGATC | 6 cut(s) | 101, 254, 267, 357, 370, 646 |
| BspQI | GCTCTTC | 1 cut(s) | 603 |
| BspT107I | GGYRCC | 1 cut(s) | 230 |
| BspTNI | GGTCTC | 1 cut(s) | 275 |
| BsrBI | CCGCTC | 1 cut(s) | 665 |
| BsrI | ACTGG | 2 cut(s) | 143, 481 |
| BssECI | CCNNGG | 2 cut(s) | 819, 983 |
| BssMI | GATC | 8 cut(s) | 106, 193, 217, 259, 304, 362, 651, 1039 |
| BssNI | GRCGYC | 3 cut(s) | 150, 174, 231 |
| BssSI | CACGAG | 1 cut(s) | 1068 |
| Bst2BI | CACGAG | 1 cut(s) | 1068 |
| Bst4CI | ACNGT | 6 cut(s) | 170, 206, 497, 700, 865, 1092 |
| Bst6I | CTCTTC | 3 cut(s) | 540, 603, 642 |
| BstACI | GRCGYC | 3 cut(s) | 150, 174, 231 |
| BstBAI | YACGTR | 1 cut(s) | 1005 |
| BstC8I | GCNNGC | 2 cut(s) | 796, 944 |
| BstDEI | CTNAG | 4 cut(s) | 404, 537, 555, 875 |
| BstDSI | CCRYGG | 2 cut(s) | 819, 983 |
| BstF5I | GGATG | 2 cut(s) | 730, 1042 |
| BstFNI | CGCG | 2 cut(s) | 210, 821 |
| BstH2I | RGCGCY | 3 cut(s) | 234, 801, 827 |
| BstHHI | GCGC | 3 cut(s) | 233, 800, 826 |
| BstKTI | GATC | 8 cut(s) | 109, 196, 220, 262, 307, 365, 654, 1042 |
| BstMAI | GTCTC | 4 cut(s) | 2, 253, 275, 740 |
| BstMBI | GATC | 8 cut(s) | 106, 193, 217, 259, 304, 362, 651, 1039 |
| BstMCI | CGRYCG | 2 cut(s) | 169, 205 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 132, 237 |
| BstSLI | GKGCMC | 2 cut(s) | 80, 1010 |
| BstUI | CGCG | 2 cut(s) | 210, 821 |
| BstV1I | GCAGC | 5 cut(s) | 167, 571, 813, 822, 1051 |
| BstV2I | GAAGAC | 1 cut(s) | 846 |
| BstX2I | RGATCY | 3 cut(s) | 259, 362, 651 |
| BstYI | RGATCY | 3 cut(s) | 259, 362, 651 |
| BsuI | GTATCC | 1 cut(s) | 488 |
| BsuRI | GGCC | 2 cut(s) | 344, 623 |
| BtgI | CCRYGG | 2 cut(s) | 819, 983 |
| BtgZI | GCGATG | 1 cut(s) | 315 |
| BtsCI | GGATG | 2 cut(s) | 730, 1042 |
| BtsIMutI | CAGTG | 2 cut(s) | 624, 705 |
| BtuMI | TCGCGA | 1 cut(s) | 210 |
| Cac8I | GCNNGC | 2 cut(s) | 796, 944 |
| CfoI | GCGC | 3 cut(s) | 233, 800, 826 |
| Cfr13I | GGNCC | 1 cut(s) | 342 |
| Cfr42I | CCGCGG | 1 cut(s) | 822 |
| CseI | GACGC | 1 cut(s) | 158 |
| Csp6I | GTAC | 1 cut(s) | 757 |
| CviAII | CATG | 2 cut(s) | 505, 1080 |
| CviQI | GTAC | 1 cut(s) | 757 |
| DdeI | CTNAG | 4 cut(s) | 404, 537, 555, 875 |
| DinI | GGCGCC | 1 cut(s) | 232 |
| DpnI | GATC | 8 cut(s) | 108, 195, 219, 261, 306, 364, 653, 1041 |
| DpnII | GATC | 8 cut(s) | 106, 193, 217, 259, 304, 362, 651, 1039 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 173 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 173 |
| Eam1104I | CTCTTC | 3 cut(s) | 540, 603, 642 |
| EarI | CTCTTC | 3 cut(s) | 540, 603, 642 |
| EciI | GGCGGA | 2 cut(s) | 597, 615 |
| Eco31I | GGTCTC | 1 cut(s) | 275 |
| Eco47III | AGCGCT | 1 cut(s) | 799 |
| Eco88I | CYCGRG | 2 cut(s) | 250, 308 |
| EcoRI | GAATTC | 3 cut(s) | 374, 449, 532 |
| EgeI | GGCGCC | 1 cut(s) | 232 |
| EheI | GGCGCC | 1 cut(s) | 232 |
| Esp3I | CGTCTC | 1 cut(s) | 253 |
| FaeI | CATG | 2 cut(s) | 508, 1083 |
| FaiI | YATR | 6 cut(s) | 506, 528, 743, 917, 1023, 1081 |
| FaqI | GGGAC | 1 cut(s) | 506 |
| FatI | CATG | 2 cut(s) | 504, 1079 |
| FauI | CCCGC | 2 cut(s) | 77, 826 |
| Fnu4HI | GCNGC | 7 cut(s) | 153, 181, 560, 811, 822, 827, 1065 |
| FokI | GGATG | 2 cut(s) | 737, 1049 |
| Fsp4HI | GCNGC | 7 cut(s) | 153, 181, 560, 811, 822, 827, 1065 |
| FspBI | CTAG | 4 cut(s) | 24, 332, 636, 795 |
| GlaI | GCGC | 3 cut(s) | 232, 799, 825 |
| GluI | GCNGC | 7 cut(s) | 153, 181, 560, 811, 822, 827, 1065 |
| HaeII | RGCGCY | 3 cut(s) | 234, 801, 827 |
| HaeIII | GGCC | 2 cut(s) | 344, 623 |
| HapII | CCGG | 2 cut(s) | 366, 563 |
| HgaI | GACGC | 1 cut(s) | 158 |
| HhaI | GCGC | 3 cut(s) | 233, 800, 826 |
| Hin1I | GRCGYC | 3 cut(s) | 150, 174, 231 |
| Hin1II | CATG | 2 cut(s) | 508, 1083 |
| Hin6I | GCGC | 3 cut(s) | 231, 798, 824 |
| HinP1I | GCGC | 3 cut(s) | 231, 798, 824 |
| HpaII | CCGG | 2 cut(s) | 366, 563 |
| HphI | GGTGA | 6 cut(s) | 8, 58, 181, 212, 562, 946 |
| Hpy166II | GTNNAC | 3 cut(s) | 78, 703, 861 |
| Hpy188III | TCNNGA | 8 cut(s) | 120, 209, 268, 454, 627, 712, 968, 1043 |
| Hpy8I | GTNNAC | 3 cut(s) | 78, 703, 861 |
| Hpy99I | CGWCG | 4 cut(s) | 134, 152, 161, 210 |
| HpyAV | CCTTC | 4 cut(s) | 109, 467, 653, 854 |
| HpyCH4III | ACNGT | 6 cut(s) | 170, 206, 497, 700, 865, 1092 |
| HpyCH4IV | ACGT | 3 cut(s) | 174, 289, 1004 |
| HpyCH4V | TGCA | 2 cut(s) | 78, 975 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 132, 237 |
| HpyF3I | CTNAG | 4 cut(s) | 404, 537, 555, 875 |
| HpySE526I | ACGT | 3 cut(s) | 174, 289, 1004 |
| Hsp92I | GRCGYC | 3 cut(s) | 150, 174, 231 |
| Hsp92II | CATG | 2 cut(s) | 508, 1083 |
| HspAI | GCGC | 3 cut(s) | 231, 798, 824 |
| KasI | GGCGCC | 1 cut(s) | 230 |
| KspI | CCGCGG | 1 cut(s) | 822 |
| Kzo9I | GATC | 8 cut(s) | 106, 193, 217, 259, 304, 362, 651, 1039 |
| LguI | GCTCTTC | 1 cut(s) | 603 |
| LmnI | GCTCC | 9 cut(s) | 131, 374, 397, 511, 662, 733, 871, 939, 1056 |
| Lsp1109I | GCAGC | 5 cut(s) | 167, 571, 813, 822, 1051 |
| MaeI | CTAG | 4 cut(s) | 24, 332, 636, 795 |
| MaeII | ACGT | 3 cut(s) | 174, 289, 1004 |
| MaeIII | GTNAC | 6 cut(s) | 14, 170, 187, 268, 290, 550 |
| MalI | GATC | 8 cut(s) | 108, 195, 219, 261, 306, 364, 653, 1041 |
| MbiI | CCGCTC | 1 cut(s) | 665 |
| MboI | GATC | 8 cut(s) | 106, 193, 217, 259, 304, 362, 651, 1039 |
| MboII | GAAGA | 6 cut(s) | 557, 620, 653, 656, 659, 851 |
| MfeI | CAATTG | 1 cut(s) | 573 |
| MflI | RGATCY | 3 cut(s) | 259, 362, 651 |
| MhlI | GDGCHC | 2 cut(s) | 80, 1010 |
| Mly113I | GGCGCC | 1 cut(s) | 231 |
| MlyI | GAGTC | 6 cut(s) | 4, 110, 155, 206, 356, 431 |
| MmeI | TCCRAC | 5 cut(s) | 153, 171, 189, 394, 903 |
| MroXI | GAANNNNTTC | 2 cut(s) | 707, 843 |
| MspA1I | CMGCKG | 3 cut(s) | 72, 180, 821 |
| MspI | CCGG | 2 cut(s) | 366, 563 |
| MunI | CAATTG | 1 cut(s) | 573 |
| Mva1269I | GAATGC | 2 cut(s) | 796, 993 |
| MvnI | CGCG | 2 cut(s) | 210, 821 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 132, 237 |
| NarI | GGCGCC | 1 cut(s) | 231 |
| NdeII | GATC | 8 cut(s) | 106, 193, 217, 259, 304, 362, 651, 1039 |
| NheI | GCTAGC | 1 cut(s) | 794 |
| NlaIII | CATG | 2 cut(s) | 508, 1083 |
| NlaIV | GGNNCC | 5 cut(s) | 232, 261, 343, 364, 370 |
| NmeAIII | GCCGAG | 2 cut(s) | 370, 778 |
| NmuCI | GTSAC | 6 cut(s) | 14, 170, 187, 268, 290, 550 |
| NruI | TCGCGA | 1 cut(s) | 210 |
| PciSI | GCTCTTC | 1 cut(s) | 603 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 156, 207 |
| PctI | GAATGC | 2 cut(s) | 796, 993 |
| PdmI | GAANNNNTTC | 2 cut(s) | 707, 843 |
| PfeI | GAWTC | 5 cut(s) | 428, 434, 568, 630, 1085 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 681 |
| PkrI | GCNGC | 7 cut(s) | 154, 182, 561, 812, 823, 828, 1066 |
| PleI | GAGTC | 6 cut(s) | 4, 110, 155, 206, 355, 430 |
| PluTI | GGCGCC | 1 cut(s) | 234 |
| PpsI | GAGTC | 6 cut(s) | 4, 110, 155, 206, 355, 430 |
| Ppu21I | YACGTR | 1 cut(s) | 1005 |
| PspN4I | GGNNCC | 5 cut(s) | 232, 261, 343, 364, 370 |
| PspPI | GGNCC | 1 cut(s) | 342 |
| PsuI | RGATCY | 3 cut(s) | 259, 362, 651 |
| PvuII | CAGCTG | 1 cut(s) | 180 |
| RruI | TCGCGA | 1 cut(s) | 210 |
| RsaI | GTAC | 1 cut(s) | 758 |
| RsaNI | GTAC | 1 cut(s) | 757 |
| SacII | CCGCGG | 1 cut(s) | 822 |
| SapI | GCTCTTC | 1 cut(s) | 603 |
| SatI | GCNGC | 7 cut(s) | 153, 181, 560, 811, 822, 827, 1065 |
| Sau3AI | GATC | 8 cut(s) | 106, 193, 217, 259, 304, 362, 651, 1039 |
| Sau96I | GGNCC | 1 cut(s) | 342 |
| SchI | GAGTC | 6 cut(s) | 4, 110, 155, 206, 356, 431 |
| SduI | GDGCHC | 2 cut(s) | 80, 1010 |
| SfoI | GGCGCC | 1 cut(s) | 232 |
| Sfr303I | CCGCGG | 1 cut(s) | 822 |
| SgrBI | CCGCGG | 1 cut(s) | 822 |
| SpeI | ACTAGT | 1 cut(s) | 635 |
| SsiI | CCGC | 8 cut(s) | 70, 153, 395, 582, 600, 665, 819, 821 |
| SspDI | GGCGCC | 1 cut(s) | 230 |
| SspMI | CTAG | 4 cut(s) | 24, 332, 636, 795 |
| TaaI | ACNGT | 6 cut(s) | 170, 206, 497, 700, 865, 1092 |
| TaiI | ACGT | 3 cut(s) | 177, 292, 1007 |
| TaqI | TCGA | 5 cut(s) | 114, 201, 378, 453, 485 |
| TatI | WGTACW | 1 cut(s) | 756 |
| TauI | GCSGC | 2 cut(s) | 155, 824 |
| TfiI | GAWTC | 5 cut(s) | 428, 434, 568, 630, 1085 |
| TscAI | CASTG | 2 cut(s) | 624, 705 |
| TseFI | GTSAC | 6 cut(s) | 14, 170, 187, 268, 290, 550 |
| TseI | GCWGC | 5 cut(s) | 180, 559, 810, 826, 1064 |
| Tsp45I | GTSAC | 6 cut(s) | 14, 170, 187, 268, 290, 550 |
| TspDTI | ATGAA | 2 cut(s) | 462, 493 |
| TspGWI | ACGGA | 3 cut(s) | 252, 287, 1049 |
| TspRI | CASTG | 2 cut(s) | 624, 705 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 681 |
| VneI | GTGCAC | 1 cut(s) | 76 |
| XapI | RAATTY | 5 cut(s) | 316, 374, 449, 532, 687 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 293 |
| XmnI | GAANNNNTTC | 2 cut(s) | 707, 843 |
| XspI | CTAG | 4 cut(s) | 24, 332, 636, 795 |
| ZraI | GACGTC | 1 cut(s) | 175 |