Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004656

Physical Location & Seq

Genomic Coordinates Forward (+)

63875421 .. 63877964

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0507400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2544 bp

ATGTTGAAGATTATTCAGACTCACAGGAACACAGACTCGGCTTTGAGATTCTTCTTCTGGGTTTCGAGGAGAAAACCTTACAAGCATGACATGAGCTGCTTTGTTTCAATGCTGGATAGGCTTGTGAGGGAGAAGCTTTTCGGGCCGGCAGACCATGTAAGGCTTTTGCTTGTTAAAGCTTGTAGGAATGAGGAAGAGCTTAAATGGGTGATTGGGTATTTGAATGAAAAGAAAAGAACTGGTTTTGGGTTTACATTGTATAGTTTCAATACGCTTTTGATTCAGTTGGGCAAGTTTGAGATGGTTAGTGAAGCTCAAAATGTGTATAATGAGATACTAAGTAGCGAGGTTAAGCCGAGTCTGTTGACATTTAATACTATGATCAATATATTGTGCAAGAAGGGCAAGGTTCAGGAAGCAGAGTTGATTTTGAGCAGGATTATGCAGTATGAAATGTTGCCGGATGTTTTTACTTATACATCGTTGGTTCTTGGGCATTGTAGAAGTGGTAACTTAAATTTGGCATTTGAGGTTTATGACCGGATGGTGAAGGCAGGTTGTGACCCGAATTCAGTTACGTACTCAACACTTATTAATGGGTTATGCAATGAGGGGAGGGTGGATGAGGCACTGGATATGCTTGATGAAATGATAGGGAAGGGGATTGAACCCACAGTTTATACTTACACTGTCCCAATTACTTCACTTTGTGAGGCAAATCGACCATTGGAAGCAATCAGGCTTTTCGGAAGTATGACGAAGAGGGGTTGCTGTCCGAATATTCATACTTATACAGCATTGATCAGCGGGTTGTCTCGGACAGGGAAACTCGAAGTTGCTATTGGACTCTATCACAAACTGTTGAAGGATGGTATGGTTCCAAGCATGGTTACCTTCAACACAATTATGAATGAAACAATTGAGGCAGGAAGATATGACATGGGTCTGAAGATTATTTATTGGATGGAGAGACATGGTTATGGTATCTCGGAAAATACCCGAACACACAATCATATCATCAAGGGCTTATGCTTGATGGGTAAGATTCACAATGCGATGGCTCTTTTAAGCAAAATGCTTAAAGTGGGACCGTCTCCAAATGTGATTACATATAACACATTGATCAATGGATACCTCAATAGAGGTAATCTAAACAATGCTCTGAGGTTATTAGAGTTGATGAAAGGGAGAGGATGTAAACTAGATGAGTGGACATATACCGAAGTTATTTCTGGGTGTTGCAAGGCGCACAAGTCTGAATTTGCATTTAATCTTTTCCATGATATGTTAAAACAGGGCATTAGCCCAAATCAGGTCACTTACAACGTTTCGATTGTTGGATGCTGTAATGAGGGGAAGGTAGATGCTGCCTCGTCATTTTTCAAGCAAATGGAAGAGAATGGTTGCTCTCCAGATATTGAAAGCTACAATGCCATTATACATCGTTTGTCAAAAGACAATCAATTTGCTAAAGCCAAGCAACTGTGTAAAAAGATGGTGGATCAAGGACTGCTTCCGAATGTCATTACCTACACATCTTTAATTGATGGCCTCTGTAAGAATGGTAGTACTGACCTTGCGTTCAGGATTTTCCATGAAATGAGAGAAAGAGATTGCTTGCCGAACTTGTACACTTATAGTTCACTTGTTTTTGGGTTATGTCAGGAAGGCAAGGCTGATGATGCTGAGAGGTTACTTGAAGAAATGGAGAGGGAAGGATTGGTTCCTGATGTGGTAACATTTACCACGCTCATTAATGGTTTTGTTATGCTTGGTAGGCTAGATCATGCATTCTTACTTCTTAAGCGAATGGTTGATGTTGGCTGCAAACCCAACTATTTTACTTTTACTGTGTTGGTCAAAGGGTTGCAAAGGGAAAGTCAGTTACTCACAGAAAAGGTTGTGGGCCTTGTCGCGCAACATGAAGCACAGTGTGGTTCCAGCTCTGACAAGAGATTCAACTTTTTTGAGATATTATGTAATCTCCTAGCTAGGATGTCAGAGAATGGATGTGAACCAACTATTGATACCTACAGTATTTTAGTGAGAGGCTTGTGTGAAGATCGCAAATATGATGAAGTAGATCAGTTGGTGGAGCATATGAAAGAGAAAGGCCTGTATCCCAGTGAAGAGTTTTACAGGCCTCTATTCTTTGCTCATTGCAAAAACTTAAAACTGGACTCTGCTCTGGAAATCTTTGGCTTGATGGCAGATAGAGGCTTTAAGGTTAACTTTTCAACCTATACAGCACTTATTTGTGCTCTCTGCAGGGCAAAACGGATGGAAGAAGCTGAAACGTTGTTGAAAAGTATGCTAGAATGCCAGTGGAATGCTGATGAGATTGTTTGGACTGTATTAATCGATGGGTTACTGAAAAAAGGGCAGTCAGATCCATGCATGCAGCTTCTTCATGTTATTGAATCTCAAAACTGCAGTCTCTGGGTCGAGACATATGCTATCTTGGCCAGAGAACTTTCTCATGTAAACAAAACTATGGCGACTTCTCAAATTGCTGACAGAGCGATAGATTTAGAAGTACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

847

Amino Acids

96.19

Weight (kDa)

6.62

Isoelectric Point (pI)

29.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	57 - 199	2.7e-08	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	87 - 133	6.3e-07	PPR repeat family
PPR_1	PF12854	117 - 144	4e-07	PPR repeat
PPR_2	PF13041	119 - 168	2.4e-10	PPR repeat family
PPR_3	PF13812	152 - 199	7.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	152 - 183	5.1e-09	PPR repeat
PPR_2	PF13041	154 - 203	6.8e-19	PPR repeat family
PPR	PF01535	157 - 187	2.3e-06	PPR repeat
TPR_24	PF23276	168 - 286	1.2e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	186 - 217	3.4e-16	PPR repeat
PPR	PF01535	192 - 222	6.8e-10	PPR repeat
PPR_2	PF13041	196 - 237	6.7e-14	PPR repeat family
PPR_3	PF13812	213 - 269	5.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	233 - 272	1e-10	PPR repeat family
PPR_3	PF13812	248 - 304	2.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	255 - 284	3.5e-06	PPR repeat
PPR_2	PF13041	264 - 304	2.6e-07	PPR repeat family
PPR_3	PF13812	328 - 379	1.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	328 - 359	1.2e-06	PPR repeat
PPR_2	PF13041	332 - 377	6.6e-11	PPR repeat family
PPR_1	PF12854	363 - 395	2.7e-09	PPR repeat
PPR_2	PF13041	366 - 415	1.8e-17	PPR repeat family
PPR	PF01535	369 - 399	3.7e-07	PPR repeat
PPR_long	PF17177	383 - 504	2.7e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	389 - 447	7.8e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	405 - 450	1.6e-13	PPR repeat family
PPR_1	PF12854	433 - 465	1.5e-07	PPR repeat
PPR_2	PF13041	437 - 476	5.3e-10	PPR repeat family
PPR_2	PF13041	471 - 520	5.4e-15	PPR repeat family
PPR_long	PF17177	488 - 619	6e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	495 - 549	3.4e-13	Pentatricopeptide repeat domain
PPR_1	PF12854	503 - 535	1.4e-13	PPR repeat
PPR_2	PF13041	506 - 555	3.2e-18	PPR repeat family
TPR_24	PF23276	507 - 603	2.1e-07	Fungal tetratrico peptide repeats
PPR	PF01535	509 - 539	6e-09	PPR repeat
PPR_1	PF12854	538 - 570	2.4e-12	PPR repeat
PPR	PF01535	544 - 574	4.9e-07	PPR repeat
PPR_2	PF13041	550 - 589	2.9e-11	PPR repeat family
PPR_3	PF13812	564 - 621	2.3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	573 - 605	1.9e-09	PPR repeat
PPR_2	PF13041	576 - 623	1.3e-13	PPR repeat family
PPR	PF01535	579 - 609	7.2e-06	PPR repeat
PPR_long	PF17177	661 - 786	3.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	716 - 757	3.8e-07	PPR repeat family
PPR_1	PF12854	739 - 771	1.2e-07	PPR repeat
PPR	PF01535	746 - 774	1.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02340 AT3G02340 AT5G15820
fragaria_vesca	FvH4_6g46010 FvH4_6g46010 FvH4_6g46010
malus_domestica	MD09G1078100.v1.1 MD17G1068100.v1.1 MD17G1068500.v1.1
prunus_persica	Prupe.3G246300_v2.0.a1
pyrus_communis	pycom09g00500 pycom17g06870 pycom17g06880
rosa_chinensis	RchiOBHm_Chr2g0164241
rosa_laevigata	RLG00000021448
rosa_multiflora	Rmu_sc0000854.1_g000011 Rmu_sc0001427.1_g000007 Rmu_sc0004956.1_g000001 Rmu_sc0007154.1_g000003 Rmu_sc0008593.1_g000002 Rmu_sc0018459.1_g000001 Rmu_sc0041118.1_g000003
rosa_roxburghii	Rroxscaffold_2G00086690 Rroxscaffold_6G00413980
rosa_rugosa	Rorug02G0507400 Rorug07G0301000
rosa_samantha	Rh2AG575600 Rh2BG586400 Rh2CG557200 Rh2DG596000
rosa_wichuraiana	Rw2G047650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	545
AccII	CGCG	1 cut(s)	1916
AciI	CCGC	1 cut(s)	807
AclI	AACGTT	2 cut(s)	1326, 2297
AclWI	GGATC	2 cut(s)	1509, 2384
AcoI	YGGCCR	1 cut(s)	2463
AcsI	RAATTY	3 cut(s)	517, 568, 1259
AcuI	CTGAAG	1 cut(s)	968
AdeI	CACNNNGTG	2 cut(s)	710, 1934
AfaI	GTAC	4 cut(s)	581, 1570, 1631, 2538
AfiI	CCNNNNNNNGG	1 cut(s)	1312
AflII	CTTAAG	1 cut(s)	1802
AjuI	GAANNNNNNNTTGG	2 cut(s)	825, 857
Alw21I	GWGCWC	1 cut(s)	2263
Alw26I	GTCTC	5 cut(s)	819, 964, 1098, 2441, 2441
AlwI	GGATC	2 cut(s)	1509, 2384
AlwNI	CAGNNNCTG	1 cut(s)	2439
AoxI	GGCC	6 cut(s)	143, 1549, 1906, 2113, 2141, 2463
ApeKI	GCWGC	4 cut(s)	96, 1367, 1824, 2401
ApoI	RAATTY	3 cut(s)	517, 568, 1259
ArsI	GACNNNNNNTTYG	6 cut(s)	1448, 1480, 1864, 1896, 2419, 2451
AseI	ATTAAT	3 cut(s)	594, 1755, 2357
Asp700I	GAANNNNTTC	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	1249, 1918
AspS9I	GGNCC	3 cut(s)	143, 1088, 1906
AsuHPI	GGTGA	2 cut(s)	220, 559
AvaII	GGWCC	1 cut(s)	1088
BalI	TGGCCA	1 cut(s)	2465
Bbv12I	GWGCWC	1 cut(s)	2263
BbvI	GCAGC	4 cut(s)	83, 1354, 1811, 2413
BcgI	CGANNNNNNTGC	2 cut(s)	2435, 2469
BciVI	GTATCC	2 cut(s)	1124, 2130
BclI	TGATCA	3 cut(s)	381, 801, 1122
BcoDI	GTCTC	5 cut(s)	819, 964, 1098, 2441, 2441
BfaI	CTAG	5 cut(s)	1202, 1781, 1988, 1992, 2315
BfmI	CTRYAG	3 cut(s)	2032, 2266, 2431
BfrI	CTTAAG	1 cut(s)	1802
BfuAI	ACCTGC	1 cut(s)	545
BfuI	GTATCC	2 cut(s)	1124, 2130
BisI	GCNGC	4 cut(s)	97, 1368, 1825, 2402
BlsI	GCNGC	4 cut(s)	98, 1369, 1826, 2403
BmcAI	AGTACT	1 cut(s)	1570
Bme18I	GGWCC	1 cut(s)	1088
BmgT120I	GGNCC	3 cut(s)	143, 1088, 1906
BmiI	GGNNCC	4 cut(s)	879, 1089, 1725, 1939
BmrI	ACTGGG	1 cut(s)	2118
BmsI	GCATC	3 cut(s)	1331, 1354, 1672
BmuI	ACTGGG	1 cut(s)	2118
BoxI	GACNNNNGTC	1 cut(s)	942
BpmI	CTGGAG	1 cut(s)	1395
Bsa29I	ATCGAT	1 cut(s)	2361
BsaAI	YACGTR	1 cut(s)	579
BsaWI	WCCGGW	1 cut(s)	540
BsaXI	ACNNNNNCTCC	2 cut(s)	1180, 1210
Bsc4I	CCNNNNNNNGG	1 cut(s)	1312
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	5 cut(s)	244, 636, 2124, 2181, 2323
Bse3DI	GCAATG	2 cut(s)	613, 2158
BseCI	ATCGAT	1 cut(s)	2361
BseLI	CCNNNNNNNGG	1 cut(s)	1312
BseMI	GCAATG	2 cut(s)	613, 2158
BseMII	CTCAG	2 cut(s)	1154, 1677
BseNI	ACTGG	5 cut(s)	244, 636, 2124, 2181, 2323
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	4 cut(s)	83, 1354, 1811, 2413
Bsh1236I	CGCG	1 cut(s)	1916
BshFI	GGCC	6 cut(s)	145, 1551, 1908, 2115, 2143, 2465
BshVI	ATCGAT	1 cut(s)	2361
BsiHKAI	GWGCWC	1 cut(s)	2263
BsiSI	CCGG	3 cut(s)	146, 461, 541
BslFI	GGGAC	2 cut(s)	677, 1101
BslI	CCNNNNNNNGG	1 cut(s)	1312
BsmAI	GTCTC	5 cut(s)	819, 964, 1098, 2441, 2441
BsmBI	CGTCTC	1 cut(s)	1098
BsmFI	GGGAC	2 cut(s)	677, 1101
BsmI	GAATGC	3 cut(s)	1790, 2324, 2335
BsnI	GGCC	6 cut(s)	145, 1551, 1908, 2115, 2143, 2465
Bsp1286I	GDGCHC	1 cut(s)	2263
Bsp1407I	TGTACA	1 cut(s)	1629
Bsp143I	GATC	8 cut(s)	381, 801, 1122, 1501, 1783, 2062, 2083, 2389
BspACI	CCGC	1 cut(s)	807
BspANI	GGCC	6 cut(s)	145, 1551, 1908, 2115, 2143, 2465
BspCNI	CTCAG	2 cut(s)	1155, 1678
BspDI	ATCGAT	1 cut(s)	2361
BspFNI	CGCG	1 cut(s)	1916
BspLI	GGNNCC	4 cut(s)	879, 1089, 1725, 1939
BspMAI	CTGCAG	2 cut(s)	2270, 2435
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	2 cut(s)	1509, 2384
BspQI	GCTCTTC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	1802
BsrDI	GCAATG	2 cut(s)	613, 2158
BsrFI	RCCGGY	1 cut(s)	145
BsrGI	TGTACA	1 cut(s)	1629
BsrI	ACTGG	5 cut(s)	244, 636, 2124, 2181, 2323
BssAI	RCCGGY	1 cut(s)	145
BssMI	GATC	8 cut(s)	381, 801, 1122, 1501, 1783, 2062, 2083, 2389
Bst4CI	ACNGT	9 cut(s)	676, 691, 861, 1092, 1485, 1852, 1932, 2036, 2353
Bst6I	CTCTTC	4 cut(s)	189, 755, 1389, 2124
BstAFI	CTTAAG	1 cut(s)	1802
BstAUI	TGTACA	1 cut(s)	1629
BstBAI	YACGTR	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	147, 1619, 2399
BstDEI	CTNAG	3 cut(s)	338, 1163, 1686
BstEII	GGTNACC	1 cut(s)	889
BstFNI	CGCG	1 cut(s)	1916
BstHHI	GCGC	2 cut(s)	1249, 1918
BstKTI	GATC	8 cut(s)	384, 804, 1125, 1504, 1786, 2065, 2086, 2392
BstMAI	GTCTC	5 cut(s)	819, 964, 1098, 2441, 2441
BstMBI	GATC	8 cut(s)	381, 801, 1122, 1501, 1783, 2062, 2083, 2389
BstMWI	GCNNNNNNNGC	7 cut(s)	118, 142, 402, 1682, 1777, 2462, 2519
BstNSI	RCATGY	1 cut(s)	2401
BstPAI	GACNNNNGTC	1 cut(s)	942
BstPI	GGTNACC	1 cut(s)	889
BstSFI	CTRYAG	3 cut(s)	2032, 2266, 2431
BstSNI	TACGTA	1 cut(s)	579
BstUI	CGCG	1 cut(s)	1916
BstV1I	GCAGC	4 cut(s)	83, 1354, 1811, 2413
BstX2I	RGATCY	1 cut(s)	2389
BstYI	RGATCY	1 cut(s)	2389
Bsu15I	ATCGAT	1 cut(s)	2361
BsuI	GTATCC	2 cut(s)	1124, 2130
BsuRI	GGCC	6 cut(s)	145, 1551, 1908, 2115, 2143, 2465
BsuTUI	ATCGAT	1 cut(s)	2361
BtgZI	GCGATG	1 cut(s)	1070
BtsIMutI	CAGTG	5 cut(s)	629, 687, 1937, 2131, 2330
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	3 cut(s)	147, 1619, 2399
CaiI	CAGNNNCTG	1 cut(s)	2439
CfoI	GCGC	2 cut(s)	1249, 1918
Cfr10I	RCCGGY	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	143, 1088, 1906
ClaI	ATCGAT	1 cut(s)	2361
Csp6I	GTAC	4 cut(s)	580, 1569, 1630, 2537
CviQI	GTAC	4 cut(s)	580, 1569, 1630, 2537
DdeI	CTNAG	3 cut(s)	338, 1163, 1686
DpnI	GATC	8 cut(s)	383, 803, 1124, 1503, 1785, 2064, 2085, 2391
DpnII	GATC	8 cut(s)	381, 801, 1122, 1501, 1783, 2062, 2083, 2389
DraIII	CACNNNGTG	2 cut(s)	710, 1934
EaeI	YGGCCR	1 cut(s)	2463
Eam1104I	CTCTTC	4 cut(s)	189, 755, 1389, 2124
EarI	CTCTTC	4 cut(s)	189, 755, 1389, 2124
Eco105I	TACGTA	1 cut(s)	579
Eco147I	AGGCCT	2 cut(s)	2115, 2143
Eco47I	GGWCC	1 cut(s)	1088
Eco57I	CTGAAG	1 cut(s)	968
Eco91I	GGTNACC	1 cut(s)	889
EcoO65I	GGTNACC	1 cut(s)	889
EcoRI	GAATTC	1 cut(s)	568
EcoT22I	ATGCAT	2 cut(s)	1792, 2399
Esp3I	CGTCTC	1 cut(s)	1098
FalI	AAGNNNNNCTT	4 cut(s)	1497, 1529, 2216, 2248
FaqI	GGGAC	2 cut(s)	677, 1101
FauI	CCCGC	1 cut(s)	800
FauNDI	CATATG	2 cut(s)	2100, 2452
FbaI	TGATCA	3 cut(s)	381, 801, 1122
Fnu4HI	GCNGC	4 cut(s)	97, 1368, 1825, 2402
Fsp4HI	GCNGC	4 cut(s)	97, 1368, 1825, 2402
FspBI	CTAG	5 cut(s)	1202, 1781, 1988, 1992, 2315
GlaI	GCGC	2 cut(s)	1248, 1917
GluI	GCNGC	4 cut(s)	97, 1368, 1825, 2402
GsuI	CTGGAG	1 cut(s)	1395
HaeIII	GGCC	6 cut(s)	145, 1551, 1908, 2115, 2143, 2465
HapII	CCGG	3 cut(s)	146, 461, 541
HhaI	GCGC	2 cut(s)	1249, 1918
Hin6I	GCGC	2 cut(s)	1247, 1916
HinP1I	GCGC	2 cut(s)	1247, 1916
HincII	GTYRAC	2 cut(s)	366, 2230
HindII	GTYRAC	2 cut(s)	366, 2230
HindIII	AAGCTT	2 cut(s)	134, 177
HpaI	GTTAAC	1 cut(s)	2230
HpaII	CCGG	3 cut(s)	146, 461, 541
HphI	GGTGA	2 cut(s)	220, 559
Hpy166II	GTNNAC	9 cut(s)	252, 366, 1199, 1212, 1632, 1643, 2015, 2230, 2485
Hpy188III	TCNNGA	7 cut(s)	413, 1412, 1585, 1664, 1727, 2189, 2446
Hpy8I	GTNNAC	9 cut(s)	252, 366, 1199, 1212, 1632, 1643, 2015, 2230, 2485
HpyAV	CCTTC	8 cut(s)	394, 544, 652, 859, 904, 1351, 1661, 1709
HpyCH4III	ACNGT	9 cut(s)	676, 691, 861, 1092, 1485, 1852, 1932, 2036, 2353
HpyCH4IV	ACGT	3 cut(s)	578, 1326, 2297
HpyF10VI	GCNNNNNNNGC	7 cut(s)	118, 142, 402, 1682, 1777, 2462, 2519
HpyF3I	CTNAG	3 cut(s)	338, 1163, 1686
HpySE526I	ACGT	3 cut(s)	578, 1326, 2297
HspAI	GCGC	2 cut(s)	1247, 1916
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Ksp22I	TGATCA	3 cut(s)	381, 801, 1122
KspAI	GTTAAC	1 cut(s)	2230
Kzo9I	GATC	8 cut(s)	381, 801, 1122, 1501, 1783, 2062, 2083, 2389
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	2095
Lsp1109I	GCAGC	4 cut(s)	83, 1354, 1811, 2413
LweI	GCATC	3 cut(s)	1331, 1354, 1672
MaeI	CTAG	5 cut(s)	1202, 1781, 1988, 1992, 2315
MaeII	ACGT	3 cut(s)	578, 1326, 2297
MaeIII	GTNAC	9 cut(s)	509, 560, 574, 889, 1315, 1692, 1735, 1884, 2367
MalI	GATC	8 cut(s)	383, 803, 1124, 1503, 1785, 2064, 2085, 2391
MboI	GATC	8 cut(s)	381, 801, 1122, 1501, 1783, 2062, 2083, 2389
MfeI	CAATTG	1 cut(s)	918
MflI	RGATCY	1 cut(s)	2389
MhlI	GDGCHC	1 cut(s)	2263
MlsI	TGGCCA	1 cut(s)	2465
MluCI	AATT	9 cut(s)	517, 568, 696, 903, 918, 1259, 1463, 1542, 2508
MluNI	TGGCCA	1 cut(s)	2465
MlyI	GAGTC	5 cut(s)	13, 29, 367, 840, 2174
MmeI	TCCRAC	1 cut(s)	1318
Mox20I	TGGCCA	1 cut(s)	2465
Mph1103I	ATGCAT	2 cut(s)	1792, 2399
MroNI	GCCGGC	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	2465
MslI	CAYNNNNRTG	2 cut(s)	905, 978
Msp20I	TGGCCA	1 cut(s)	2465
MspA1I	CMGCKG	1 cut(s)	807
MspCI	CTTAAG	1 cut(s)	1802
MspI	CCGG	3 cut(s)	146, 461, 541
MunI	CAATTG	1 cut(s)	918
Mva1269I	GAATGC	3 cut(s)	1790, 2324, 2335
MvnI	CGCG	1 cut(s)	1916
MwoI	GCNNNNNNNGC	7 cut(s)	118, 142, 402, 1682, 1777, 2462, 2519
NaeI	GCCGGC	1 cut(s)	147
NdeI	CATATG	2 cut(s)	2100, 2452
NdeII	GATC	8 cut(s)	381, 801, 1122, 1501, 1783, 2062, 2083, 2389
NgoMIV	GCCGGC	1 cut(s)	145
NlaIV	GGNNCC	4 cut(s)	879, 1089, 1725, 1939
NmeAIII	GCCGAG	2 cut(s)	17, 381
NmuCI	GTSAC	2 cut(s)	560, 1315
NsiI	ATGCAT	2 cut(s)	1792, 2399
NspI	RCATGY	1 cut(s)	2401
PaeI	GCATGC	1 cut(s)	2401
PceI	AGGCCT	2 cut(s)	2115, 2143
PciSI	GCTCTTC	1 cut(s)	189
PctI	GAATGC	3 cut(s)	1790, 2324, 2335
PdiI	GCCGGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	137
PfeI	GAWTC	5 cut(s)	48, 280, 1045, 1956, 2420
PkrI	GCNGC	4 cut(s)	98, 1369, 1826, 2403
PleI	GAGTC	5 cut(s)	13, 29, 366, 840, 2174
PpsI	GAGTC	5 cut(s)	13, 29, 366, 840, 2174
Ppu21I	YACGTR	1 cut(s)	579
PshAI	GACNNNNGTC	1 cut(s)	942
PshBI	ATTAAT	3 cut(s)	594, 1755, 2357
Psp1406I	AACGTT	2 cut(s)	1326, 2297
PspEI	GGTNACC	1 cut(s)	889
PspN4I	GGNNCC	4 cut(s)	879, 1089, 1725, 1939
PspPI	GGNCC	3 cut(s)	143, 1088, 1906
PstI	CTGCAG	2 cut(s)	2270, 2435
PstNI	CAGNNNCTG	1 cut(s)	2439
PsuI	RGATCY	1 cut(s)	2389
RsaI	GTAC	4 cut(s)	581, 1570, 1631, 2538
RsaNI	GTAC	4 cut(s)	580, 1569, 1630, 2537
RseI	CAYNNNNRTG	2 cut(s)	905, 978
SapI	GCTCTTC	1 cut(s)	189
SatI	GCNGC	4 cut(s)	97, 1368, 1825, 2402
Sau3AI	GATC	8 cut(s)	381, 801, 1122, 1501, 1783, 2062, 2083, 2389
Sau96I	GGNCC	3 cut(s)	143, 1088, 1906
ScaI	AGTACT	1 cut(s)	1570
SchI	GAGTC	5 cut(s)	13, 29, 367, 840, 2174
SduI	GDGCHC	1 cut(s)	2263
SfaNI	GCATC	3 cut(s)	1331, 1354, 1672
SfcI	CTRYAG	3 cut(s)	2032, 2266, 2431
SinI	GGWCC	1 cut(s)	1088
SmiMI	CAYNNNNRTG	2 cut(s)	905, 978
SmlI	CTYRAG	1 cut(s)	1802
SmoI	CTYRAG	1 cut(s)	1802
SnaBI	TACGTA	1 cut(s)	579
SphI	GCATGC	1 cut(s)	2401
Sse9I	AATT	9 cut(s)	517, 568, 696, 903, 918, 1259, 1463, 1542, 2508
SseBI	AGGCCT	2 cut(s)	2115, 2143
SsiI	CCGC	1 cut(s)	807
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	5 cut(s)	1202, 1781, 1988, 1992, 2315
StuI	AGGCCT	2 cut(s)	2115, 2143
TaaI	ACNGT	9 cut(s)	676, 691, 861, 1092, 1485, 1852, 1932, 2036, 2353
TaiI	ACGT	3 cut(s)	581, 1329, 2300
TaqI	TCGA	6 cut(s)	65, 721, 831, 1331, 2361, 2445
TasI	AATT	9 cut(s)	517, 568, 696, 903, 918, 1259, 1463, 1542, 2508
TatI	WGTACW	3 cut(s)	1568, 1629, 2536
TfiI	GAWTC	5 cut(s)	48, 280, 1045, 1956, 2420
TscAI	CASTG	5 cut(s)	636, 694, 1937, 2131, 2330
TseFI	GTSAC	2 cut(s)	560, 1315
TseI	GCWGC	4 cut(s)	96, 1367, 1824, 2401
Tsp45I	GTSAC	2 cut(s)	560, 1315
TspGWI	ACGGA	1 cut(s)	2293
TspRI	CASTG	5 cut(s)	636, 694, 1937, 2131, 2330
Vha464I	CTTAAG	1 cut(s)	1802
VpaK11BI	GGWCC	1 cut(s)	1088
VspI	ATTAAT	3 cut(s)	594, 1755, 2357
XapI	RAATTY	3 cut(s)	517, 568, 1259
XceI	RCATGY	1 cut(s)	2401
XmnI	GAANNNNTTC	1 cut(s)	137
XspI	CTAG	5 cut(s)	1202, 1781, 1988, 1992, 2315
ZrmI	AGTACT	1 cut(s)	1570
Zsp2I	ATGCAT	2 cut(s)	1792, 2399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.