Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004956.1

Orthogroup ID

OG0004656

Physical Location & Seq

Genomic Coordinates Reverse (-)

1023 .. 1415

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004956.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgtctaagactcctcacctacctagcaacccagagccaccaaaccaacccgacccgccccgactcagtcgctggtgcacccatcacaacttcaaccctttcgccaatcccatcgattcctgcagctccgaaggctacttcttctccaacgctgcctccgattccgaccatgacatcagctgcttcgtcaccgatctctgcgaccatcgcgcctcctccgatcatctccccaactattgcgtcctcatctgggatccgtttgtgaccgaactggagatcaaaggtgacgacggcgatgatctcatgtcaaattccaatttagggctagggtttggggctgagtcaaattctcaaggcttcggctctgaatttggtgactttctagctccgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

130

Amino Acids

14.27

Weight (kDa)

4.26

Isoelectric Point (pI)

55.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02340 AT3G02340 AT5G15820
fragaria_vesca	FvH4_6g46010 FvH4_6g46010 FvH4_6g46010
malus_domestica	MD09G1078100.v1.1 MD17G1068100.v1.1 MD17G1068500.v1.1
prunus_persica	Prupe.3G246300_v2.0.a1
pyrus_communis	pycom09g00500 pycom17g06870 pycom17g06880
rosa_chinensis	RchiOBHm_Chr2g0164241
rosa_laevigata	RLG00000021448
rosa_multiflora	Rmu_sc0000854.1_g000011 Rmu_sc0001427.1_g000007 Rmu_sc0004956.1_g000001 Rmu_sc0007154.1_g000003 Rmu_sc0008593.1_g000002 Rmu_sc0018459.1_g000001 Rmu_sc0041118.1_g000003
rosa_roxburghii	Rroxscaffold_2G00086690 Rroxscaffold_6G00413980
rosa_rugosa	Rorug02G0507400 Rorug07G0301000
rosa_samantha	Rh2AG575600 Rh2BG586400 Rh2CG557200 Rh2DG596000
rosa_wichuraiana	Rw2G047650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	210
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	2 cut(s)	248, 261
AcsI	RAATTY	3 cut(s)	310, 346, 368
AfiI	CCNNNNNNNGG	2 cut(s)	250, 321
AgsI	TTSAA	1 cut(s)	94
AluBI	AGCT	3 cut(s)	126, 180, 386
AluI	AGCT	3 cut(s)	126, 180, 386
Alw21I	GWGCWC	1 cut(s)	80
Alw44I	GTGCAC	1 cut(s)	76
AlwI	GGATC	2 cut(s)	248, 261
AlwNI	CAGNNNCTG	1 cut(s)	72
ApaLI	GTGCAC	1 cut(s)	76
ApeKI	GCWGC	3 cut(s)	123, 152, 180
ApoI	RAATTY	3 cut(s)	310, 346, 368
AspLEI	GCGC	1 cut(s)	212
AsuHPI	GGTGA	4 cut(s)	8, 181, 296, 386
BaeGI	GKGCMC	1 cut(s)	80
BamHI	GGATCC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	3 cut(s)	135, 139, 167
BccI	CCATC	3 cut(s)	90, 119, 213
BceAI	ACGGC	1 cut(s)	307
BfaI	CTAG	3 cut(s)	24, 326, 383
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	3 cut(s)	124, 153, 181
BlsI	GCNGC	3 cut(s)	125, 154, 182
BmiI	GGNNCC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	293
BpuEI	CTTGAG	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	114
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 140, 158, 170
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 321
Bse1I	ACTGG	1 cut(s)	276
BseCI	ATCGAT	1 cut(s)	114
BseLI	CCNNNNNNNGG	2 cut(s)	250, 321
BseMII	CTCAG	2 cut(s)	79, 330
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	3 cut(s)	135, 139, 167
Bsh1236I	CGCG	1 cut(s)	210
BshVI	ATCGAT	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	250, 321
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	5 cut(s)	193, 220, 253, 276, 298
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	78, 331
BspDI	ATCGAT	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	255
BspMAI	CTGCAG	1 cut(s)	125
BspPI	GGATC	2 cut(s)	248, 261
BsrI	ACTGG	1 cut(s)	276
BssMI	GATC	5 cut(s)	193, 220, 253, 276, 298
BstDEI	CTNAG	3 cut(s)	6, 65, 339
BstFNI	CGCG	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	5 cut(s)	196, 223, 256, 279, 301
BstMBI	GATC	5 cut(s)	193, 220, 253, 276, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 207
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	80
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	135, 139, 167
BstX2I	RGATCY	1 cut(s)	253
BstYI	RGATCY	1 cut(s)	253
Bsu15I	ATCGAT	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	114
BtgZI	GCGATG	2 cut(s)	191, 309
CaiI	CAGNNNCTG	1 cut(s)	72
CfoI	GCGC	1 cut(s)	212
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	229
CviAII	CATG	2 cut(s)	170, 304
CviJI	RGCY	9 cut(s)	37, 126, 135, 180, 325, 338, 357, 363, 386
CviKI_1	RGCY	9 cut(s)	37, 126, 135, 180, 325, 338, 357, 363, 386
DdeI	CTNAG	3 cut(s)	6, 65, 339
DpnI	GATC	5 cut(s)	195, 222, 255, 278, 300
DpnII	GATC	5 cut(s)	193, 220, 253, 276, 298
FaeI	CATG	2 cut(s)	173, 307
FaiI	YATR	2 cut(s)	171, 305
FatI	CATG	2 cut(s)	169, 303
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	124, 153, 181
Fsp4HI	GCNGC	3 cut(s)	124, 153, 181
FspBI	CTAG	3 cut(s)	24, 326, 383
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	124, 153, 181
GsuI	CTGGAG	1 cut(s)	293
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	173, 307
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	5 cut(s)	10, 63, 116, 161, 341
HphI	GGTGA	4 cut(s)	8, 181, 296, 386
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	5 cut(s)	130, 160, 166, 220, 367
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	78, 123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 207
HpyF3I	CTNAG	3 cut(s)	6, 65, 339
Hsp92II	CATG	2 cut(s)	173, 307
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	5 cut(s)	193, 220, 253, 276, 298
LmnI	GCTCC	2 cut(s)	131, 391
LpnPI	CCDG	5 cut(s)	45, 58, 133, 235, 257
Lsp1109I	GCAGC	3 cut(s)	135, 139, 167
MaeI	CTAG	3 cut(s)	24, 326, 383
MaeIII	GTNAC	4 cut(s)	187, 262, 284, 374
MalI	GATC	5 cut(s)	195, 222, 255, 278, 300
MboI	GATC	5 cut(s)	193, 220, 253, 276, 298
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	4 cut(s)	310, 316, 346, 368
MlyI	GAGTC	3 cut(s)	4, 57, 350
MmeI	TCCRAC	2 cut(s)	171, 189
MnlI	CCTC	5 cut(s)	24, 166, 223, 226, 254
MspA1I	CMGCKG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	132, 207
NdeII	GATC	5 cut(s)	193, 220, 253, 276, 298
NlaIII	CATG	2 cut(s)	173, 307
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	4 cut(s)	187, 262, 284, 374
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	116, 161
PflFI	GACNNNGTC	1 cut(s)	66
PkrI	GCNGC	3 cut(s)	125, 154, 182
PleI	GAGTC	3 cut(s)	4, 57, 349
PpsI	GAGTC	3 cut(s)	4, 57, 349
PspN4I	GGNNCC	1 cut(s)	255
PstI	CTGCAG	1 cut(s)	125
PstNI	CAGNNNCTG	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	253
PsyI	GACNNNGTC	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	180
SatI	GCNGC	3 cut(s)	124, 153, 181
Sau3AI	GATC	5 cut(s)	193, 220, 253, 276, 298
SchI	GAGTC	3 cut(s)	4, 57, 350
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	6 cut(s)	21, 25, 128, 182, 286, 388
SfcI	CTRYAG	1 cut(s)	121
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	4 cut(s)	310, 316, 346, 368
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	3 cut(s)	24, 326, 383
TaqI	TCGA	1 cut(s)	114
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	4 cut(s)	310, 316, 346, 368
TfiI	GAWTC	2 cut(s)	116, 161
TseFI	GTSAC	4 cut(s)	187, 262, 284, 374
TseI	GCWGC	3 cut(s)	123, 152, 180
Tsp45I	GTSAC	4 cut(s)	187, 262, 284, 374
TspGWI	ACGGA	2 cut(s)	246, 378
Tth111I	GACNNNGTC	1 cut(s)	66
VneI	GTGCAC	1 cut(s)	76
XapI	RAATTY	3 cut(s)	310, 346, 368
XspI	CTAG	3 cut(s)	24, 326, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.