Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004656

Physical Location & Seq

Genomic Coordinates Forward (+)

36316961 .. 36320872

Gene Structure 3912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAGCGTGTGCACTTGGATTCGGACAAATGATCGAAAGTCGGGAACGAACCCGAATGTGGACGAGCACTCCAATTCCGGGCATGCATCACTCTCCTATGTCAAAACAATAATCCAGATCGCCCCCGCCTACATCGATCTCCCTCCTGACACCCATCACAACTTCAACCCCTTCGCCGATCCTATCGATTCCCTCAGCTCCGACAACAACTTCTTCTCCGACGCTGCCTCCGATTCCGACAGTGACGTCAGCTGCTTCGCCACCAATCTCTTTGACCGTCGTGACTCCTCCGATCATCCCCCTAGCAACTACGTCCTTGTCTTGGGATCCACCAAAACCCACCCAACCTCAAAGCACCAAACTCTAATCTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

124

Amino Acids

13.62

Weight (kDa)

5.22

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02340 AT3G02340 AT5G15820
fragaria_vesca	FvH4_6g46010 FvH4_6g46010 FvH4_6g46010
malus_domestica	MD09G1078100.v1.1 MD17G1068100.v1.1 MD17G1068500.v1.1
prunus_persica	Prupe.3G246300_v2.0.a1
pyrus_communis	pycom09g00500 pycom17g06870 pycom17g06880
rosa_chinensis	RchiOBHm_Chr2g0164241
rosa_laevigata	RLG00000021448
rosa_multiflora	Rmu_sc0000854.1_g000011 Rmu_sc0001427.1_g000007 Rmu_sc0004956.1_g000001 Rmu_sc0007154.1_g000003 Rmu_sc0008593.1_g000002 Rmu_sc0018459.1_g000001 Rmu_sc0041118.1_g000003
rosa_roxburghii	Rroxscaffold_2G00086690 Rroxscaffold_6G00413980
rosa_rugosa	Rorug02G0507400 Rorug07G0301000
rosa_samantha	Rh2AG575600 Rh2BG586400 Rh2CG557200 Rh2DG596000
rosa_wichuraiana	Rw2G047650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
AatII	GACGTC	1 cut(s)	249
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	3 cut(s)	173, 321, 334
AcyI	GRCGYC	1 cut(s)	246
AfiI	CCNNNNNNNGG	3 cut(s)	58, 78, 322
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	2 cut(s)	198, 252
AluI	AGCT	2 cut(s)	198, 252
Alw21I	GWGCWC	2 cut(s)	14, 69
Alw44I	GTGCAC	1 cut(s)	10
AlwI	GGATC	3 cut(s)	173, 321, 334
ApaLI	GTGCAC	1 cut(s)	10
ApeKI	GCWGC	2 cut(s)	224, 252
AsuC2I	CCSGG	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	14
BamHI	GGATCC	1 cut(s)	326
BauI	CACGAG	1 cut(s)	370
Bbv12I	GWGCWC	2 cut(s)	14, 69
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	211, 239
BccI	CCATC	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	79
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	2 cut(s)	225, 253
BlsI	GCNGC	2 cut(s)	226, 254
Bme1390I	CCNGG	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	79
Bsa29I	ATCGAT	2 cut(s)	135, 186
BsaHI	GRCGYC	1 cut(s)	246
BsaXI	ACNNNNNCTCC	6 cut(s)	53, 83, 200, 212, 230, 242
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 78, 322
BseCI	ATCGAT	2 cut(s)	135, 186
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	3 cut(s)	58, 78, 322
BseMII	CTCAG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	211, 239
BshVI	ATCGAT	2 cut(s)	135, 186
BsiHKAI	GWGCWC	2 cut(s)	14, 69
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	3 cut(s)	58, 78, 322
Bsp1286I	GDGCHC	2 cut(s)	14, 69
Bsp143I	GATC	6 cut(s)	31, 117, 136, 178, 292, 326
BspACI	CCGC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	207
BspDI	ATCGAT	2 cut(s)	135, 186
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	3 cut(s)	173, 321, 334
BssMI	GATC	6 cut(s)	31, 117, 136, 178, 292, 326
BssNI	GRCGYC	1 cut(s)	246
BssSI	CACGAG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	242, 278
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	1 cut(s)	295
BstKTI	GATC	6 cut(s)	34, 120, 139, 181, 295, 329
BstMBI	GATC	6 cut(s)	31, 117, 136, 178, 292, 326
BstNSI	RCATGY	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	14
BstV1I	GCAGC	2 cut(s)	211, 239
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
Bsu15I	ATCGAT	2 cut(s)	135, 186
BsuTUI	ATCGAT	2 cut(s)	135, 186
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	84
ClaI	ATCGAT	2 cut(s)	135, 186
CseI	GACGC	1 cut(s)	230
CviAII	CATG	1 cut(s)	83
CviJI	RGCY	2 cut(s)	198, 252
CviKI_1	RGCY	2 cut(s)	198, 252
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	6 cut(s)	33, 119, 138, 180, 294, 328
DpnII	GATC	6 cut(s)	31, 117, 136, 178, 292, 326
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
EcoT22I	ATGCAT	1 cut(s)	88
FaeI	CATG	1 cut(s)	86
FaiI	YATR	2 cut(s)	84, 99
FatI	CATG	1 cut(s)	82
FauI	CCCGC	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	225, 253
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	2 cut(s)	225, 253
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	2 cut(s)	225, 253
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	230
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	86
HinfI	GANTC	4 cut(s)	19, 188, 233, 284
HpaII	CCGG	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	12, 61
Hpy188I	TCNGA	6 cut(s)	24, 202, 220, 232, 238, 292
Hpy188III	TCNNGA	5 cut(s)	42, 115, 146, 281, 372
Hpy8I	GTNNAC	2 cut(s)	12, 61
Hpy99I	CGWCG	2 cut(s)	224, 282
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	2 cut(s)	242, 278
HpyCH4IV	ACGT	2 cut(s)	246, 312
HpyCH4V	TGCA	2 cut(s)	12, 86
HpyF3I	CTNAG	1 cut(s)	194
HpySE526I	ACGT	2 cut(s)	246, 312
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	86
Kzo9I	GATC	6 cut(s)	31, 117, 136, 178, 292, 326
LmnI	GCTCC	1 cut(s)	203
LpnPI	CCDG	3 cut(s)	91, 128, 159
Lsp1109I	GCAGC	2 cut(s)	211, 239
LweI	GCATC	1 cut(s)	95
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	2 cut(s)	246, 312
MaeIII	GTNAC	2 cut(s)	242, 281
MalI	GATC	6 cut(s)	33, 119, 138, 180, 294, 328
MboI	GATC	6 cut(s)	31, 117, 136, 178, 292, 326
MboII	GAAGA	1 cut(s)	205
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	2 cut(s)	14, 69
MluCI	AATT	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	3 cut(s)	225, 243, 261
MnlI	CCTC	5 cut(s)	153, 203, 238, 298, 358
Mph1103I	ATGCAT	1 cut(s)	88
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	1 cut(s)	79
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	6 cut(s)	31, 117, 136, 178, 292, 326
NlaIII	CATG	1 cut(s)	86
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	2 cut(s)	242, 281
NsiI	ATGCAT	1 cut(s)	88
NspI	RCATGY	1 cut(s)	86
PaeI	GCATGC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PfeI	GAWTC	3 cut(s)	19, 188, 233
PkrI	GCNGC	2 cut(s)	226, 254
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	328
PsuI	RGATCY	1 cut(s)	326
PvuII	CAGCTG	1 cut(s)	252
SatI	GCNGC	2 cut(s)	225, 253
Sau3AI	GATC	6 cut(s)	31, 117, 136, 178, 292, 326
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	2 cut(s)	14, 69
SetI	ASST	5 cut(s)	200, 249, 254, 315, 350
SfaNI	GCATC	1 cut(s)	95
SphI	GCATGC	1 cut(s)	86
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	242, 278
TaiI	ACGT	2 cut(s)	249, 315
TaqI	TCGA	3 cut(s)	34, 135, 186
TasI	AATT	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	19, 188, 233
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	242, 281
TseI	GCWGC	2 cut(s)	224, 252
Tsp45I	GTSAC	2 cut(s)	242, 281
TspRI	CASTG	1 cut(s)	247
VneI	GTGCAC	1 cut(s)	10
XceI	RCATGY	1 cut(s)	86
XspI	CTAG	1 cut(s)	303
ZraI	GACGTC	1 cut(s)	247
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.