AT3G03010

Peptidyl-tRNA hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0006608
Physical Location & Seq
Reverse (-)
678182 .. 680605
2424 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03010.1

Sequence Viewer

Length: 540 bp
ATGGATTTGGTGTGGTTATTAAGTGTTTTACTTGTTGGAGCTGCACTTGGATATTACATCAGCACTTTACGACAAACCCGCCGAATCTTTCTCTCCTCCAAATCTGTCGCCATAGATGCAGGATCCAGCGGGAATAAGAAAACCAAGTCCAAGGAACCCCTCGAGATAGAGAAACTCGCTGATTTTCGCAAAAATTTCAAAATGGTTTTGGTTGTGAGGAATGATCTTAAAATGGGTAAAGGGAAGATTGCAGCTCAATGCAGTCATGCAACTTTAGGTTTATACAAGAAACTCCTTCAACGGGCGCCAAAAGCCTTGAACAGATGGGAATATTGTGCTCAGCCAAAAGTTGTTGTCAAAATTGAAAGTGAGGAAGAGATGCTAGTTTTGCAAGAAAGAGCAAAGACCCTGAAACTGCCAACCCATATCACCATTGATGCGGGAAAAACACAGATCGCTCCAAATTCAAGGACAGTAATGGCTATTCTTGGACCTGTTGATAATGTTGATGAAGTAACAGGTGGACTAAAGCTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTH2

Protein Analysis

179

Amino Acids

19.85

Weight (kDa)

9.8

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTH2 PF01981 66 - 179 3.3e-42 Peptidyl-tRNA hydrolase PTH2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 304
AciI CCGC 3 cut(s) 79, 129, 440
AclWI GGATC 2 cut(s) 117, 130
AcsI RAATTY 2 cut(s) 193, 463
AcyI GRCGYC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 301
AgsI TTSAA 5 cut(s) 199, 299, 319, 365, 468
AluBI AGCT 3 cut(s) 41, 254, 532
AluI AGCT 3 cut(s) 41, 254, 532
Alw21I GWGCWC 1 cut(s) 340
AlwI GGATC 2 cut(s) 117, 130
Ama87I CYCGRG 1 cut(s) 161
ApeKI GCWGC 2 cut(s) 41, 251
ApoI RAATTY 2 cut(s) 193, 463
AspLEI GCGC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 491
AsuHPI GGTGA 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 491
BamHI GGATCC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 340
BbvI GCAGC 2 cut(s) 28, 263
BccI CCATC 1 cut(s) 318
BfaI CTAG 1 cut(s) 383
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 2 cut(s) 42, 252
BlpI GCTNAGC 1 cut(s) 339
BlsI GCNGC 2 cut(s) 43, 253
Bme18I GGWCC 1 cut(s) 491
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 3 cut(s) 124, 156, 306
BmsI GCATC 3 cut(s) 106, 369, 427
Bpu1102I GCTNAGC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 353
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 2 cut(s) 28, 263
BsgI GTGCAG 1 cut(s) 27
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 340
BsiHKCI CYCGRG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 340
Bsp143I GATC 3 cut(s) 122, 223, 453
Bsp1720I GCTNAGC 1 cut(s) 339
BspACI CCGC 3 cut(s) 79, 129, 440
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 3 cut(s) 124, 156, 306
BspPI GGATC 2 cut(s) 117, 130
BspT107I GGYRCC 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 122, 223, 453
BssNI GRCGYC 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 339
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 3 cut(s) 125, 226, 456
BstMBI GATC 3 cut(s) 122, 223, 453
BstMWI GCNNNNNNNGC 3 cut(s) 116, 311, 388
BstV1I GCAGC 2 cut(s) 28, 263
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
CfoI GCGC 1 cut(s) 307
Cfr13I GGNCC 1 cut(s) 491
CviAII CATG 1 cut(s) 266
CviJI RGCY 6 cut(s) 41, 254, 314, 343, 482, 532
CviKI_1 RGCY 6 cut(s) 41, 254, 314, 343, 482, 532
DdeI CTNAG 1 cut(s) 339
DinI GGCGCC 1 cut(s) 306
DpnI GATC 3 cut(s) 124, 225, 455
DpnII GATC 3 cut(s) 122, 223, 453
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 161
EcoT14I CCWWGG 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 1 cut(s) 269
FaiI YATR 5 cut(s) 113, 267, 283, 426, 536
FatI CATG 1 cut(s) 265
FauI CCCGC 3 cut(s) 86, 122, 433
Fnu4HI GCNGC 2 cut(s) 42, 252
Fsp4HI GCNGC 2 cut(s) 42, 252
FspBI CTAG 1 cut(s) 383
GlaI GCGC 1 cut(s) 306
GluI GCNGC 2 cut(s) 42, 252
HaeII RGCGCY 1 cut(s) 308
HhaI GCGC 1 cut(s) 307
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 1 cut(s) 84
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 524
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 524
HpyAV CCTTC 1 cut(s) 305
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 6 cut(s) 44, 119, 251, 261, 269, 391
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 311, 388
HpyF3I CTNAG 1 cut(s) 339
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 1 cut(s) 305
KasI GGCGCC 1 cut(s) 304
Kzo9I GATC 3 cut(s) 122, 223, 453
LmnI GCTCC 2 cut(s) 38, 463
LpnPI CCDG 5 cut(s) 105, 139, 422, 504, 507
Lsp1109I GCAGC 2 cut(s) 28, 263
LweI GCATC 3 cut(s) 106, 369, 427
MaeI CTAG 1 cut(s) 383
MaeIII GTNAC 1 cut(s) 514
MalI GATC 3 cut(s) 124, 225, 455
MboI GATC 3 cut(s) 122, 223, 453
MboII GAAGA 2 cut(s) 256, 386
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 3 cut(s) 193, 360, 463
Mly113I GGCGCC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 4 cut(s) 106, 170, 210, 364
MseI TTAA 2 cut(s) 20, 228
MspA1I CMGCKG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 116, 311, 388
NarI GGCGCC 1 cut(s) 305
NdeII GATC 3 cut(s) 122, 223, 453
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 3 cut(s) 124, 156, 306
PaeR7I CTCGAG 1 cut(s) 161
PfeI GAWTC 1 cut(s) 84
PkrI GCNGC 2 cut(s) 43, 253
PluTI GGCGCC 1 cut(s) 308
PspN4I GGNNCC 3 cut(s) 124, 156, 306
PspPI GGNCC 1 cut(s) 491
PsuI RGATCY 1 cut(s) 122
SaqAI TTAA 2 cut(s) 20, 228
SatI GCNGC 2 cut(s) 42, 252
Sau3AI GATC 3 cut(s) 122, 223, 453
Sau96I GGNCC 1 cut(s) 491
SduI GDGCHC 1 cut(s) 340
SetI ASST 6 cut(s) 43, 256, 280, 496, 523, 534
SfaNI GCATC 3 cut(s) 106, 369, 427
SfoI GGCGCC 1 cut(s) 306
Sfr274I CTCGAG 1 cut(s) 161
SinI GGWCC 1 cut(s) 491
SlaI CTCGAG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 3 cut(s) 193, 360, 463
SsiI CCGC 3 cut(s) 79, 129, 440
SspDI GGCGCC 1 cut(s) 304
SspI AATATT 1 cut(s) 332
SspMI CTAG 1 cut(s) 383
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 475
TaqI TCGA 1 cut(s) 162
TasI AATT 3 cut(s) 193, 360, 463
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 2 cut(s) 20, 228
Tru9I TTAA 2 cut(s) 20, 228
TseI GCWGC 2 cut(s) 41, 251
TspDTI ATGAA 1 cut(s) 525
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 2 cut(s) 193, 463
XhoI CTCGAG 1 cut(s) 161
XspI CTAG 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.