Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016737.1

Orthogroup ID

OG0006608

Physical Location & Seq

Genomic Coordinates Forward (+)

7019 .. 8928

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016737.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgatgggtttgggttgggtgggagcgatattagtaggagcaggctggcttgctttgggctattgctttggcgcgcgttaccctccttctcgcattttggtctcagccagggccgccagactagccaagcagaaagctgctgccagtgacggtgacggcaagaagaagaagatcaaagacccccttgacattgaaaagctcgctgacattctccaagatttcaaaatggtcttggtggtcaggaatgatctgaagatgggcaaagggaaaattgctgctcaatgcagtcatgcgactttgggcctctacaaaaagctcctccgtcgggcaccaaaatctttaaacaggtgggagatgtgtgcacaacctaaagttgttctaaaagtagaaactgaagaagagatgcttgttttgcaagatagagcaaaatcacttaacttaccaaaccatattacaattgatgctgggaagactcagattgcaccaaattcaaggacagtgatggctattcttggaccgattgaagtggttgatgatgtaacaggtggactgaaactcatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTH2

Protein Analysis

187

Amino Acids

20.38

Weight (kDa)

9.76

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03010 AT3G03010 AT3G03010 AT3G03010 AT3G03010 AT5G16870
fragaria_vesca	FvH4_7g34040 FvH4_7g34040 FvH4_7g34040 FvH4_7g34040
malus_domestica	MD01G1012300.v1.1 MD15G1337800.v1.1
prunus_persica	Prupe.2G326900_v2.0.a1
pyrus_communis	pycom01g04320 pycom17g16850
rosa_chinensis	RchiOBHm_Chr1g0384301
rosa_laevigata	RLG00000026050
rosa_multiflora	Rmu_sc0016737.1_g000002 Rmu_sc0018832.1_g000003
rosa_rugosa	Rorug01G0446600 Rorug01G0446700
rosa_samantha	Rh1AG472200 Rh1BG429900 Rh1CG442500 Rh1DG462500
rosa_wichuraiana	Rw1G040050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccII	CGCG	2 cut(s)	74, 76
AciI	CCGC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	487
AcuI	CTGAAG	2 cut(s)	272, 414
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	4 cut(s)	194, 223, 492, 524
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	3 cut(s)	137, 199, 316
AluI	AGCT	3 cut(s)	137, 199, 316
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	1 cut(s)	106
Alw44I	GTGCAC	1 cut(s)	360
AoxI	GGCC	2 cut(s)	111, 301
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	3 cut(s)	137, 140, 275
ApoI	RAATTY	1 cut(s)	487
AspLEI	GCGC	2 cut(s)	74, 76
AspS9I	GGNCC	3 cut(s)	111, 301, 515
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	1 cut(s)	515
BaeGI	GKGCMC	2 cut(s)	331, 364
BanI	GGYRCC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	124, 127, 262
BccI	CCATC	2 cut(s)	250, 496
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	106
BfaI	CTAG	1 cut(s)	122
BisI	GCNGC	4 cut(s)	114, 138, 141, 276
BlsI	GCNGC	4 cut(s)	115, 139, 142, 277
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	3 cut(s)	111, 301, 515
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	2 cut(s)	393, 451
BpiI	GAAGAC	1 cut(s)	476
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	117, 488
BseNI	ACTGG	1 cut(s)	144
BsePI	GCGCGC	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	308
BseSI	GKGCMC	2 cut(s)	331, 364
BseXI	GCAGC	3 cut(s)	124, 127, 262
BseYI	CCCAGC	1 cut(s)	464
Bsh1236I	CGCG	2 cut(s)	74, 76
BshFI	GGCC	2 cut(s)	113, 303
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	364
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	106
BsnI	GGCC	2 cut(s)	113, 303
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	2 cut(s)	331, 364
Bsp143I	GATC	2 cut(s)	171, 247
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	2 cut(s)	113, 303
BspCNI	CTCAG	2 cut(s)	116, 487
BspFNI	CGCG	2 cut(s)	74, 76
BspLI	GGNNCC	1 cut(s)	330
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	108
BssHII	GCGCGC	1 cut(s)	72
BssMI	GATC	2 cut(s)	171, 247
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	152, 499
Bst6I	CTCTTC	1 cut(s)	393
BstC8I	GCNNGC	5 cut(s)	43, 47, 51, 74, 201
BstDEI	CTNAG	2 cut(s)	103, 474
BstFNI	CGCG	2 cut(s)	74, 76
BstHHI	GCGC	2 cut(s)	74, 76
BstKTI	GATC	2 cut(s)	174, 250
BstMAI	GTCTC	1 cut(s)	106
BstMBI	GATC	2 cut(s)	171, 247
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 122, 412
BstNI	CCWGG	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	107
BstSLI	GKGCMC	2 cut(s)	331, 364
BstUI	CGCG	2 cut(s)	74, 76
BstV1I	GCAGC	3 cut(s)	124, 127, 262
BstV2I	GAAGAC	1 cut(s)	476
BsuRI	GGCC	2 cut(s)	113, 303
BtsIMutI	CAGTG	2 cut(s)	151, 504
Cac8I	GCNNGC	5 cut(s)	43, 47, 51, 74, 201
CfoI	GCGC	2 cut(s)	74, 76
Cfr13I	GGNCC	3 cut(s)	111, 301, 515
CviAII	CATG	2 cut(s)	290, 559
DdeI	CTNAG	2 cut(s)	103, 474
DpnI	GATC	2 cut(s)	173, 249
DpnII	GATC	2 cut(s)	171, 247
DraI	TTTAAA	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	2 cut(s)	272, 414
EcoRII	CCWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	293, 562
FaiI	YATR	3 cut(s)	291, 450, 560
FalI	AAGNNNNNCTT	4 cut(s)	168, 200, 390, 422
FatI	CATG	2 cut(s)	289, 558
Fnu4HI	GCNGC	4 cut(s)	114, 138, 141, 276
Fsp4HI	GCNGC	4 cut(s)	114, 138, 141, 276
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	2 cut(s)	73, 75
GluI	GCNGC	4 cut(s)	114, 138, 141, 276
GsaI	CCCAGC	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	113, 303
HhaI	GCGC	2 cut(s)	74, 76
Hin1II	CATG	2 cut(s)	293, 562
Hin6I	GCGC	2 cut(s)	72, 74
HinP1I	GCGC	2 cut(s)	72, 74
HinfI	GANTC	1 cut(s)	472
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	362, 548
Hpy188I	TCNGA	2 cut(s)	252, 477
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	362, 548
Hpy99I	CGWCG	1 cut(s)	327
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	2 cut(s)	152, 499
HpyCH4V	TGCA	4 cut(s)	285, 362, 415, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 122, 412
HpyF3I	CTNAG	2 cut(s)	103, 474
Hsp92II	CATG	2 cut(s)	293, 562
HspAI	GCGC	2 cut(s)	72, 74
Kzo9I	GATC	2 cut(s)	171, 247
LmnI	GCTCC	3 cut(s)	23, 38, 321
Lsp1109I	GCAGC	3 cut(s)	124, 127, 262
LweI	GCATC	2 cut(s)	393, 451
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	4 cut(s)	77, 146, 152, 538
MalI	GATC	2 cut(s)	173, 249
MboI	GATC	2 cut(s)	171, 247
MboII	GAAGA	7 cut(s)	175, 178, 181, 265, 407, 410, 481
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	331, 364
MluCI	AATT	3 cut(s)	270, 456, 487
MlyI	GAGTC	1 cut(s)	466
MnlI	CCTC	3 cut(s)	93, 314, 329
MseI	TTAA	2 cut(s)	341, 435
MspR9I	CCNGG	1 cut(s)	109
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	109
MvnI	CGCG	2 cut(s)	74, 76
MwoI	GCNNNNNNNGC	3 cut(s)	113, 122, 412
NdeII	GATC	2 cut(s)	171, 247
NlaIII	CATG	2 cut(s)	293, 562
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	2 cut(s)	146, 152
PauI	GCGCGC	1 cut(s)	72
PkrI	GCNGC	4 cut(s)	115, 139, 142, 277
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	3 cut(s)	111, 301, 515
PteI	GCGCGC	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	341, 435
SatI	GCNGC	4 cut(s)	114, 138, 141, 276
Sau3AI	GATC	2 cut(s)	171, 247
Sau96I	GGNCC	3 cut(s)	111, 301, 515
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	2 cut(s)	331, 364
SetI	ASST	6 cut(s)	139, 201, 318, 350, 370, 547
SfaNI	GCATC	2 cut(s)	393, 451
SinI	GGWCC	1 cut(s)	515
Sse9I	AATT	3 cut(s)	270, 456, 487
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	107
TaaI	ACNGT	2 cut(s)	152, 499
TaqII	GACCGA	1 cut(s)	532
TasI	AATT	3 cut(s)	270, 456, 487
TauI	GCSGC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	341, 435
Tru9I	TTAA	2 cut(s)	341, 435
TscAI	CASTG	2 cut(s)	151, 504
TseFI	GTSAC	2 cut(s)	146, 152
TseI	GCWGC	3 cut(s)	137, 140, 275
Tsp45I	GTSAC	2 cut(s)	146, 152
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	2 cut(s)	151, 504
VneI	GTGCAC	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	515
XapI	RAATTY	1 cut(s)	487
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.