Rw1G040050

peptidyl-tRNA hydrolase 2, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006608
Physical Location & Seq
Reverse (-)
67482153 .. 67484854
2702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040050.1

Sequence Viewer

Length: 564 bp
ATGATGGGTTTGGGTTGGGTGGGAGCGATATTAGTAGGAGCAGGCTGGCTTGCTTTGGGCTATTGCTTTGGCGCGCGTTACCCTCCTTCTCGCATTTTGGTCTCAGCTAGGGCCGCCAGACTAGCCAAGCAGAAAGCTGCTGCCAGTGACGGTAACGGCAAGAAGAAGAAGATCAAAGACCCCCTTGACATTGAAAAGCTCGCTGACATTCTCCAAGATTTCAAAATGGTCTTGGTGGTCAGGAATGATCTGAAGATGGGCAAAGGGAAAATTGCTGCTCAATGCAGTCATGCGACTTTGGGCCTCTACAAAAAGCTCCTCCGTCGGGCACCAAAATCTTTAAACAGGTGGGAGATGTGTGCACAACCTAAAGTTGTTCTAAAAGTAGAAACTGAAGAAGAGATGCTTGTTTTGCAAGATAGAGCAAAATCACTTAACTTACCAAACCATATTACAATTGATGCTGGGAAGACTCAGATTGCACCAAATTCAAGGACAGTGATGGCTATTCTTGGACCGATTGAAGTGGTTGATGATGTAACAGGTGGACTGAAACTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTH2

Protein Analysis

187

Amino Acids

20.37

Weight (kDa)

9.83

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTH2 PF01981 74 - 187 9.2e-42 Peptidyl-tRNA hydrolase PTH2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AccII CGCG 2 cut(s) 74, 76
AciI CCGC 1 cut(s) 114
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 2 cut(s) 272, 414
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 4 cut(s) 194, 223, 492, 524
AluBI AGCT 4 cut(s) 107, 137, 199, 316
AluI AGCT 4 cut(s) 107, 137, 199, 316
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 360
AoxI GGCC 2 cut(s) 111, 301
ApaLI GTGCAC 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 137, 140, 275
ApoI RAATTY 1 cut(s) 487
AspLEI GCGC 2 cut(s) 74, 76
AspS9I GGNCC 3 cut(s) 111, 301, 515
AvaII GGWCC 1 cut(s) 515
BaeGI GKGCMC 2 cut(s) 331, 364
BanI GGYRCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 3 cut(s) 124, 127, 262
BccI CCATC 2 cut(s) 250, 496
BceAI ACGGC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 2 cut(s) 108, 122
BisI GCNGC 4 cut(s) 114, 138, 141, 276
BlsI GCNGC 4 cut(s) 115, 139, 142, 277
Bme18I GGWCC 1 cut(s) 515
BmgT120I GGNCC 3 cut(s) 111, 301, 515
BmiI GGNNCC 1 cut(s) 330
BmsI GCATC 2 cut(s) 393, 451
BpiI GAAGAC 1 cut(s) 476
BsaI GGTCTC 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 2 cut(s) 117, 488
BseNI ACTGG 1 cut(s) 144
BsePI GCGCGC 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 2 cut(s) 331, 364
BseXI GCAGC 3 cut(s) 124, 127, 262
BseYI CCCAGC 1 cut(s) 464
Bsh1236I CGCG 2 cut(s) 74, 76
BshFI GGCC 2 cut(s) 113, 303
BshNI GGYRCC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 106
BsnI GGCC 2 cut(s) 113, 303
Bso31I GGTCTC 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 331, 364
Bsp143I GATC 2 cut(s) 171, 247
BspACI CCGC 1 cut(s) 114
BspANI GGCC 2 cut(s) 113, 303
BspCNI CTCAG 2 cut(s) 116, 487
BspFNI CGCG 2 cut(s) 74, 76
BspLI GGNNCC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 106
BsrI ACTGG 1 cut(s) 144
BssHII GCGCGC 1 cut(s) 72
BssMI GATC 2 cut(s) 171, 247
Bst4CI ACNGT 2 cut(s) 152, 499
Bst6I CTCTTC 1 cut(s) 393
BstC8I GCNNGC 5 cut(s) 43, 47, 51, 74, 201
BstDEI CTNAG 2 cut(s) 103, 474
BstFNI CGCG 2 cut(s) 74, 76
BstHHI GCGC 2 cut(s) 74, 76
BstKTI GATC 2 cut(s) 174, 250
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 2 cut(s) 171, 247
BstMWI GCNNNNNNNGC 3 cut(s) 113, 122, 412
BstSLI GKGCMC 2 cut(s) 331, 364
BstUI CGCG 2 cut(s) 74, 76
BstV1I GCAGC 3 cut(s) 124, 127, 262
BstV2I GAAGAC 1 cut(s) 476
BsuRI GGCC 2 cut(s) 113, 303
BtsIMutI CAGTG 2 cut(s) 151, 504
Cac8I GCNNGC 5 cut(s) 43, 47, 51, 74, 201
CfoI GCGC 2 cut(s) 74, 76
Cfr13I GGNCC 3 cut(s) 111, 301, 515
CviAII CATG 2 cut(s) 290, 559
DdeI CTNAG 2 cut(s) 103, 474
DpnI GATC 2 cut(s) 173, 249
DpnII GATC 2 cut(s) 171, 247
DraI TTTAAA 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 515
Eco57I CTGAAG 2 cut(s) 272, 414
FaeI CATG 2 cut(s) 293, 562
FaiI YATR 3 cut(s) 291, 450, 560
FalI AAGNNNNNCTT 4 cut(s) 168, 200, 390, 422
FatI CATG 2 cut(s) 289, 558
Fnu4HI GCNGC 4 cut(s) 114, 138, 141, 276
Fsp4HI GCNGC 4 cut(s) 114, 138, 141, 276
FspBI CTAG 2 cut(s) 108, 122
GlaI GCGC 2 cut(s) 73, 75
GluI GCNGC 4 cut(s) 114, 138, 141, 276
GsaI CCCAGC 1 cut(s) 468
HaeIII GGCC 2 cut(s) 113, 303
HhaI GCGC 2 cut(s) 74, 76
Hin1II CATG 2 cut(s) 293, 562
Hin6I GCGC 2 cut(s) 72, 74
HinP1I GCGC 2 cut(s) 72, 74
HinfI GANTC 1 cut(s) 472
Hpy166II GTNNAC 2 cut(s) 362, 548
Hpy188I TCNGA 2 cut(s) 252, 477
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 2 cut(s) 362, 548
Hpy99I CGWCG 1 cut(s) 327
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 2 cut(s) 152, 499
HpyCH4V TGCA 4 cut(s) 285, 362, 415, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 122, 412
HpyF3I CTNAG 2 cut(s) 103, 474
Hsp92II CATG 2 cut(s) 293, 562
HspAI GCGC 2 cut(s) 72, 74
Kzo9I GATC 2 cut(s) 171, 247
LmnI GCTCC 3 cut(s) 23, 38, 321
LpnPI CCDG 8 cut(s) 27, 31, 130, 157, 226, 331, 450, 528
Lsp1109I GCAGC 3 cut(s) 124, 127, 262
LweI GCATC 2 cut(s) 393, 451
MaeI CTAG 2 cut(s) 108, 122
MaeIII GTNAC 4 cut(s) 77, 146, 152, 538
MalI GATC 2 cut(s) 173, 249
MboI GATC 2 cut(s) 171, 247
MboII GAAGA 7 cut(s) 175, 178, 181, 265, 407, 410, 481
MfeI CAATTG 1 cut(s) 456
MhlI GDGCHC 2 cut(s) 331, 364
MluCI AATT 3 cut(s) 270, 456, 487
MlyI GAGTC 1 cut(s) 466
MnlI CCTC 3 cut(s) 93, 314, 329
MseI TTAA 2 cut(s) 341, 435
MunI CAATTG 1 cut(s) 456
MvnI CGCG 2 cut(s) 74, 76
MwoI GCNNNNNNNGC 3 cut(s) 113, 122, 412
NdeII GATC 2 cut(s) 171, 247
NlaIII CATG 2 cut(s) 293, 562
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 1 cut(s) 146
PauI GCGCGC 1 cut(s) 72
PkrI GCNGC 4 cut(s) 115, 139, 142, 277
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 464
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 3 cut(s) 111, 301, 515
PteI GCGCGC 1 cut(s) 72
SaqAI TTAA 2 cut(s) 341, 435
SatI GCNGC 4 cut(s) 114, 138, 141, 276
Sau3AI GATC 2 cut(s) 171, 247
Sau96I GGNCC 3 cut(s) 111, 301, 515
SchI GAGTC 1 cut(s) 466
SduI GDGCHC 2 cut(s) 331, 364
SetI ASST 7 cut(s) 109, 139, 201, 318, 350, 370, 547
SfaNI GCATC 2 cut(s) 393, 451
SinI GGWCC 1 cut(s) 515
Sse9I AATT 3 cut(s) 270, 456, 487
SsiI CCGC 1 cut(s) 114
SspMI CTAG 2 cut(s) 108, 122
TaaI ACNGT 2 cut(s) 152, 499
TaqII GACCGA 1 cut(s) 532
TasI AATT 3 cut(s) 270, 456, 487
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 341, 435
Tru9I TTAA 2 cut(s) 341, 435
TscAI CASTG 2 cut(s) 151, 504
TseFI GTSAC 1 cut(s) 146
TseI GCWGC 3 cut(s) 137, 140, 275
Tsp45I GTSAC 1 cut(s) 146
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 2 cut(s) 151, 504
VneI GTGCAC 1 cut(s) 360
VpaK11BI GGWCC 1 cut(s) 515
XapI RAATTY 1 cut(s) 487
XspI CTAG 2 cut(s) 108, 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.