FvH4_7g34040

peptidyl-tRNA hydrolase 2, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006608
Physical Location & Seq
Forward (+)
24070546 .. 24073066
2521 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g34040.t4

Sequence Viewer

Length: 597 bp
ATGATGGGATTGGGATGGGTGGGAGCGATATTAGTAGGAGCAGGCTGGCTTGCTTTGGGCTACTGCTTTGGCGCGCGTTACCCTCCTGCTCGCATTTTAGTGTCCGCTAGAGCCGCCAGACTTGCCAAGCACAAAGCAGCAGCTGCCAGTGACGGTGACGGTAACGGCAAGAAGAATAAGAACAAGAACAAGAAGAATGATAAGATCAGTGACCCCCTTGACGTTGAGAAGCTCGCTGACATTCTCGAAGATTTCAAAATGGTGTTGGTGGTCAGGAATGATCTGAAGATGGGCAAAGGGAAGATTGCTGCTCAATGCAGTCATGCGACTTTGGGCCTCTACAAAAAGCTCCTCCGTCGGGCACCTAAATCTTTAAACAGGTGGGAGATGTGTGGACAACCCAAAGTTGTTCTAAAAGTAGAAACTGAAGAAGAGATGCTTGTTTTGCAAGACAGAGCAAAATCACTTAATTTACCAAATCATATTACAATTGATGCTGGGAAGACTCAGATTGCACCAAATTCAAGGACAGTGATGGCTATTCTTGGACCAATTGAAGTGGTTGATGATGTAACAGGTGGACTGAAACTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTH2

Protein Analysis

199

Amino Acids

21.5

Weight (kDa)

9.71

Isoelectric Point (pI)

36.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTH2 PF01981 85 - 152 2.3e-25 Peptidyl-tRNA hydrolase PTH2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 361
AccII CGCG 2 cut(s) 74, 76
AciI CCGC 2 cut(s) 105, 114
AcsI RAATTY 1 cut(s) 520
AcuI CTGAAG 2 cut(s) 305, 447
AfiI CCNNNNNNNGG 1 cut(s) 358
AgsI TTSAA 3 cut(s) 256, 525, 557
AluBI AGCT 3 cut(s) 143, 232, 349
AluI AGCT 3 cut(s) 143, 232, 349
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 4 cut(s) 137, 140, 143, 308
ApoI RAATTY 1 cut(s) 520
AspLEI GCGC 2 cut(s) 74, 76
AspS9I GGNCC 2 cut(s) 334, 548
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 548
BaeGI GKGCMC 1 cut(s) 364
BanI GGYRCC 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 509
BbvI GCAGC 4 cut(s) 130, 149, 152, 295
BccI CCATC 3 cut(s) 9, 283, 529
BceAI ACGGC 1 cut(s) 181
BfaI CTAG 1 cut(s) 108
BisI GCNGC 5 cut(s) 114, 138, 141, 144, 309
BlsI GCNGC 5 cut(s) 115, 139, 142, 145, 310
Bme18I GGWCC 1 cut(s) 548
BmgT120I GGNCC 2 cut(s) 334, 548
BmiI GGNNCC 1 cut(s) 363
BmsI GCATC 2 cut(s) 426, 484
BpiI GAAGAC 1 cut(s) 509
Bsc4I CCNNNNNNNGG 1 cut(s) 358
Bse1I ACTGG 1 cut(s) 147
BseGI GGATG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 1 cut(s) 147
BsePI GCGCGC 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 341
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 4 cut(s) 130, 149, 152, 295
BseYI CCCAGC 1 cut(s) 497
Bsh1236I CGCG 2 cut(s) 74, 76
BshFI GGCC 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 358
BsnI GGCC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 2 cut(s) 204, 280
BspACI CCGC 2 cut(s) 105, 114
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 2 cut(s) 74, 76
BspLI GGNNCC 1 cut(s) 363
BspT107I GGYRCC 1 cut(s) 361
BsrI ACTGG 1 cut(s) 147
BssHII GCGCGC 1 cut(s) 72
BssMI GATC 2 cut(s) 204, 280
Bst4CI ACNGT 3 cut(s) 155, 161, 532
Bst6I CTCTTC 1 cut(s) 426
BstAPI GCANNNNNTGC 1 cut(s) 143
BstC8I GCNNGC 6 cut(s) 43, 47, 51, 74, 91, 234
BstDEI CTNAG 1 cut(s) 507
BstF5I GGATG 1 cut(s) 20
BstFNI CGCG 2 cut(s) 74, 76
BstHHI GCGC 2 cut(s) 74, 76
BstKTI GATC 2 cut(s) 207, 283
BstMBI GATC 2 cut(s) 204, 280
BstMWI GCNNNNNNNGC 4 cut(s) 113, 122, 143, 445
BstSLI GKGCMC 1 cut(s) 364
BstUI CGCG 2 cut(s) 74, 76
BstV1I GCAGC 4 cut(s) 130, 149, 152, 295
BstV2I GAAGAC 1 cut(s) 509
BsuRI GGCC 1 cut(s) 336
BtsCI GGATG 1 cut(s) 20
BtsIMutI CAGTG 3 cut(s) 154, 214, 537
Cac8I GCNNGC 6 cut(s) 43, 47, 51, 74, 91, 234
CaiI CAGNNNCTG 1 cut(s) 143
CfoI GCGC 2 cut(s) 74, 76
Cfr13I GGNCC 2 cut(s) 334, 548
CspCI CAANNNNNGTGG 2 cut(s) 540, 575
CviAII CATG 2 cut(s) 323, 592
CviJI RGCY 9 cut(s) 45, 49, 60, 113, 143, 232, 336, 349, 539
CviKI_1 RGCY 9 cut(s) 45, 49, 60, 113, 143, 232, 336, 349, 539
DdeI CTNAG 1 cut(s) 507
DpnI GATC 2 cut(s) 206, 282
DpnII GATC 2 cut(s) 204, 280
DraI TTTAAA 1 cut(s) 375
Eam1104I CTCTTC 1 cut(s) 426
EarI CTCTTC 1 cut(s) 426
Eco47I GGWCC 1 cut(s) 548
Eco57I CTGAAG 2 cut(s) 305, 447
FaeI CATG 2 cut(s) 326, 595
FaiI YATR 3 cut(s) 324, 483, 593
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FatI CATG 2 cut(s) 322, 591
Fnu4HI GCNGC 5 cut(s) 114, 138, 141, 144, 309
FokI GGATG 1 cut(s) 27
Fsp4HI GCNGC 5 cut(s) 114, 138, 141, 144, 309
FspBI CTAG 1 cut(s) 108
GlaI GCGC 2 cut(s) 73, 75
GluI GCNGC 5 cut(s) 114, 138, 141, 144, 309
GsaI CCCAGC 1 cut(s) 501
HaeIII GGCC 1 cut(s) 336
HhaI GCGC 2 cut(s) 74, 76
Hin1II CATG 2 cut(s) 326, 595
Hin6I GCGC 2 cut(s) 72, 74
HinP1I GCGC 2 cut(s) 72, 74
HinfI GANTC 1 cut(s) 505
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 395, 581
Hpy188I TCNGA 2 cut(s) 285, 510
Hpy188III TCNNGA 2 cut(s) 245, 274
Hpy8I GTNNAC 2 cut(s) 395, 581
Hpy99I CGWCG 1 cut(s) 360
HpyCH4III ACNGT 3 cut(s) 155, 161, 532
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 318, 448, 515
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 122, 143, 445
HpyF3I CTNAG 1 cut(s) 507
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 2 cut(s) 326, 595
HspAI GCGC 2 cut(s) 72, 74
Kzo9I GATC 2 cut(s) 204, 280
LmnI GCTCC 3 cut(s) 23, 38, 354
LpnPI CCDG 9 cut(s) 27, 31, 99, 130, 160, 259, 364, 483, 561
Lsp1109I GCAGC 4 cut(s) 130, 149, 152, 295
LweI GCATC 2 cut(s) 426, 484
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 6 cut(s) 77, 149, 155, 161, 209, 571
MalI GATC 2 cut(s) 206, 282
MboI GATC 2 cut(s) 204, 280
MboII GAAGA 8 cut(s) 184, 205, 260, 298, 313, 440, 443, 514
MfeI CAATTG 2 cut(s) 489, 552
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 4 cut(s) 469, 489, 520, 552
MlyI GAGTC 1 cut(s) 499
MnlI CCTC 3 cut(s) 93, 347, 362
MseI TTAA 2 cut(s) 374, 468
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 143
MunI CAATTG 2 cut(s) 489, 552
MvnI CGCG 2 cut(s) 74, 76
MwoI GCNNNNNNNGC 4 cut(s) 113, 122, 143, 445
NdeII GATC 2 cut(s) 204, 280
NlaIII CATG 2 cut(s) 326, 595
NlaIV GGNNCC 1 cut(s) 363
NmuCI GTSAC 3 cut(s) 149, 155, 209
PauI GCGCGC 1 cut(s) 72
PkrI GCNGC 5 cut(s) 115, 139, 142, 145, 310
PleI GAGTC 1 cut(s) 499
PpsI GAGTC 1 cut(s) 499
PspFI CCCAGC 1 cut(s) 497
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 2 cut(s) 334, 548
PstNI CAGNNNCTG 1 cut(s) 143
PteI GCGCGC 1 cut(s) 72
PvuII CAGCTG 1 cut(s) 143
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 2 cut(s) 374, 468
SatI GCNGC 5 cut(s) 114, 138, 141, 144, 309
Sau3AI GATC 2 cut(s) 204, 280
Sau96I GGNCC 2 cut(s) 334, 548
SchI GAGTC 1 cut(s) 499
SduI GDGCHC 1 cut(s) 364
SetI ASST 7 cut(s) 145, 225, 234, 351, 367, 383, 580
SfaNI GCATC 2 cut(s) 426, 484
SinI GGWCC 1 cut(s) 548
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 4 cut(s) 469, 489, 520, 552
SsiI CCGC 2 cut(s) 105, 114
SspMI CTAG 1 cut(s) 108
TaaI ACNGT 3 cut(s) 155, 161, 532
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 246
TasI AATT 4 cut(s) 469, 489, 520, 552
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 2 cut(s) 374, 468
Tru9I TTAA 2 cut(s) 374, 468
TscAI CASTG 3 cut(s) 154, 214, 537
TseFI GTSAC 3 cut(s) 149, 155, 209
TseI GCWGC 4 cut(s) 137, 140, 143, 308
Tsp45I GTSAC 3 cut(s) 149, 155, 209
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 3 cut(s) 154, 214, 537
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 1 cut(s) 520
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.