Rh1DG462500

peptidyl-tRNA hydrolase 2, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006608
Physical Location & Seq
Forward (+)
66559131 .. 66561476
2346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG462500.1

Sequence Viewer

Length: 459 bp
ATGATGGGTTTGGGTTGGGTGGGAGCGATATTAGTAGGAGCAGGCTGGCTTGCTTTGGGCTATTGCTTTGGCGCGCGTTACCCTCCTTCTCGCATTTTCGTCTCAGCTAGGGCCGCCAGACTAGCCAAGCAGAAAGCTGCTGCCAGTGACGGTAACGGCAAGAAGAAGAAGATCAAAGACCCCCTTGACATTGAAAAGCTCGCTGACATTCTCCAAGATTTCAAAATGGTCTTGGTGGTCAGGAATGATCTGAAGATGGGCAAAGGGAAAATTGCTGCTCAATGCAGTCATGTGACTTTGGGCCTCTACAAAAAGCTCCTCCGTCGGGCACCAAAATCTTTAAATAGGTGGGAGATGTGTGCACAACCTAAAGTTGTTCTAAAAGTAGAAACTGAAGAAGAGATGCTTGTTTTGCAAGTAAGTGTTCTGAGGATTATTTACAATATATTTTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTH2

Protein Analysis

152

Amino Acids

16.95

Weight (kDa)

9.98

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTH2 PF01981 74 - 140 8.2e-23 Peptidyl-tRNA hydrolase PTH2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 328
AccII CGCG 2 cut(s) 74, 76
AciI CCGC 1 cut(s) 114
AcuI CTGAAG 2 cut(s) 272, 414
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 2 cut(s) 194, 223
AluBI AGCT 4 cut(s) 107, 137, 199, 316
AluI AGCT 4 cut(s) 107, 137, 199, 316
Alw21I GWGCWC 1 cut(s) 364
Alw26I GTCTC 1 cut(s) 106
Alw44I GTGCAC 1 cut(s) 360
AoxI GGCC 2 cut(s) 111, 301
ApaLI GTGCAC 1 cut(s) 360
ApeKI GCWGC 3 cut(s) 137, 140, 275
AspLEI GCGC 2 cut(s) 74, 76
AspS9I GGNCC 2 cut(s) 111, 301
BaeGI GKGCMC 2 cut(s) 331, 364
BanI GGYRCC 1 cut(s) 328
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 3 cut(s) 124, 127, 262
BccI CCATC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 3 cut(s) 108, 122, 457
BisI GCNGC 4 cut(s) 114, 138, 141, 276
BlsI GCNGC 4 cut(s) 115, 139, 142, 277
BmgT120I GGNCC 2 cut(s) 111, 301
BmiI GGNNCC 1 cut(s) 330
BmsI GCATC 1 cut(s) 393
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 144
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMII CTCAG 2 cut(s) 117, 419
BseNI ACTGG 1 cut(s) 144
BsePI GCGCGC 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 2 cut(s) 331, 364
BseXI GCAGC 3 cut(s) 124, 127, 262
Bsh1236I CGCG 2 cut(s) 74, 76
BshFI GGCC 2 cut(s) 113, 303
BshNI GGYRCC 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 106
BsmBI CGTCTC 1 cut(s) 106
BsnI GGCC 2 cut(s) 113, 303
Bsp1286I GDGCHC 2 cut(s) 331, 364
Bsp143I GATC 2 cut(s) 171, 247
BspACI CCGC 1 cut(s) 114
BspANI GGCC 2 cut(s) 113, 303
BspCNI CTCAG 2 cut(s) 116, 420
BspFNI CGCG 2 cut(s) 74, 76
BspLI GGNNCC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 328
BsrI ACTGG 1 cut(s) 144
BssHII GCGCGC 1 cut(s) 72
BssMI GATC 2 cut(s) 171, 247
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 1 cut(s) 393
BstC8I GCNNGC 5 cut(s) 43, 47, 51, 74, 201
BstDEI CTNAG 2 cut(s) 103, 428
BstFNI CGCG 2 cut(s) 74, 76
BstHHI GCGC 2 cut(s) 74, 76
BstKTI GATC 2 cut(s) 174, 250
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 2 cut(s) 171, 247
BstMWI GCNNNNNNNGC 3 cut(s) 113, 122, 412
BstSLI GKGCMC 2 cut(s) 331, 364
BstUI CGCG 2 cut(s) 74, 76
BstV1I GCAGC 3 cut(s) 124, 127, 262
BsuRI GGCC 2 cut(s) 113, 303
BtsIMutI CAGTG 1 cut(s) 151
Cac8I GCNNGC 5 cut(s) 43, 47, 51, 74, 201
CfoI GCGC 2 cut(s) 74, 76
Cfr13I GGNCC 2 cut(s) 111, 301
CviAII CATG 1 cut(s) 290
DdeI CTNAG 2 cut(s) 103, 428
DpnI GATC 2 cut(s) 173, 249
DpnII GATC 2 cut(s) 171, 247
DraI TTTAAA 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 272, 414
Esp3I CGTCTC 1 cut(s) 106
FaeI CATG 1 cut(s) 293
FaiI YATR 2 cut(s) 291, 446
FalI AAGNNNNNCTT 4 cut(s) 168, 200, 390, 422
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 4 cut(s) 114, 138, 141, 276
Fsp4HI GCNGC 4 cut(s) 114, 138, 141, 276
FspBI CTAG 3 cut(s) 108, 122, 457
GlaI GCGC 2 cut(s) 73, 75
GluI GCNGC 4 cut(s) 114, 138, 141, 276
HaeIII GGCC 2 cut(s) 113, 303
HhaI GCGC 2 cut(s) 74, 76
Hin1II CATG 1 cut(s) 293
Hin6I GCGC 2 cut(s) 72, 74
HinP1I GCGC 2 cut(s) 72, 74
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 2 cut(s) 252, 429
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 1 cut(s) 362
Hpy99I CGWCG 1 cut(s) 327
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 3 cut(s) 285, 362, 415
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 122, 412
HpyF3I CTNAG 2 cut(s) 103, 428
Hsp92II CATG 1 cut(s) 293
HspAI GCGC 2 cut(s) 72, 74
Kzo9I GATC 2 cut(s) 171, 247
LmnI GCTCC 3 cut(s) 23, 38, 321
LpnPI CCDG 5 cut(s) 27, 31, 130, 157, 226
Lsp1109I GCAGC 3 cut(s) 124, 127, 262
LweI GCATC 1 cut(s) 393
MaeI CTAG 3 cut(s) 108, 122, 457
MaeIII GTNAC 4 cut(s) 77, 146, 152, 292
MalI GATC 2 cut(s) 173, 249
MboI GATC 2 cut(s) 171, 247
MboII GAAGA 6 cut(s) 175, 178, 181, 265, 407, 410
MhlI GDGCHC 2 cut(s) 331, 364
MluCI AATT 1 cut(s) 270
MnlI CCTC 4 cut(s) 93, 314, 329, 423
MseI TTAA 1 cut(s) 341
MvnI CGCG 2 cut(s) 74, 76
MwoI GCNNNNNNNGC 3 cut(s) 113, 122, 412
NdeII GATC 2 cut(s) 171, 247
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 2 cut(s) 146, 292
PauI GCGCGC 1 cut(s) 72
PkrI GCNGC 4 cut(s) 115, 139, 142, 277
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 2 cut(s) 111, 301
PteI GCGCGC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 4 cut(s) 114, 138, 141, 276
Sau3AI GATC 2 cut(s) 171, 247
Sau96I GGNCC 2 cut(s) 111, 301
SduI GDGCHC 2 cut(s) 331, 364
SetI ASST 6 cut(s) 109, 139, 201, 318, 350, 370
SfaNI GCATC 1 cut(s) 393
Sse9I AATT 1 cut(s) 270
SsiI CCGC 1 cut(s) 114
SspMI CTAG 3 cut(s) 108, 122, 457
TaaI ACNGT 1 cut(s) 152
TasI AATT 1 cut(s) 270
TauI GCSGC 1 cut(s) 116
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 2 cut(s) 146, 292
TseI GCWGC 3 cut(s) 137, 140, 275
Tsp45I GTSAC 2 cut(s) 146, 292
TspGWI ACGGA 1 cut(s) 311
TspRI CASTG 1 cut(s) 151
VneI GTGCAC 1 cut(s) 360
XspI CTAG 3 cut(s) 108, 122, 457
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.