Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006608

Physical Location & Seq

Genomic Coordinates Forward (+)

3249135 .. 3251104

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g04320.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGAAAAAGATAAACATGTGTGCCCAACGCTCGTTAAGTTTCATAAACAATGTAGTACTGTTAAGTTTCATAAATAGTGTAGTACCGTTAAGTTTCATAAACAGTGTAGTACAATTAAATCTCATAAACAGTGTAATACCGTTAACTTTCATAAACAGTGTAGTATCGTTAAGTTTTATGAACAGTGGTACAATTAAGTTTTATAAACAATGTAGTAATGTAATAAGTTTCATAAACAGTGTAGTACCATTAAATTTCATAAACAATGTACAAACTCTCTTTAGCGCATTGCCAAGAGCAAAGGCCAGAGAGAGGAGGTGTGGCATAGAGAGAGAAGAGATGTGTAATTGTGAGGTGTGTATTATCTCACCCCATTGTGCCTTTATTTATAGTAATATGGAAGATAGTCTAGGAGATATGGATCGCATTCCTAATCTAATAGGACTGCAACAAAACGTACATTTTAAGATTAGTATTAGTGATATTTATAAAACAGGTATTGTTATCTATACATCCATTTTTACTTTTCACACACTCCCCAATTTCCAACAGACATATCACTTTTCATACTCTTCTCAATTTTCGGCTGTCGGATCAATGATTGAAGAAGATCTCACGGCCCTTTTTTGTCTTTCAGAAGAGCCCATTGGCCCAGCTCTGTTTGATGATAGGGTTGGCTTGCTTTGGGGTATTGCTTTGGCACTCGTTACCCTTCTTCTCACATTATTTTCTCAGCCAGACTCGCTAAGCAGGCTGCACTTGCCAATGATCTTAGTAATGGAAAGAAGAAGAAGAAGAACAAGGACAAGCCCAAAGATCCTATCGAGATTGAAAACCTCGCCAACATTCTCCAAGATTTCAAAATGGTATTACTTCAAGCTTTATCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTTTAATACTTGATGATTTCGAAGCACCTGTGATTCCGTATTCCTTTATTCACTTTCTTGATTGTTTTCTTCAGTGCCGCTCAATGCAGGTAGGTGTAGATACTTTATTTTTGTTTTTTTTTTTTGGTGCACTAAAATTAAGCCATTCCTTTATATGCACCCTTTTATGTATTTTCAAATTGAGCAATTATAGGTGTTATGTTTTTTTCTCTATTGATCGAATTATTTTTTTTGTTCAAACTTGTTATCGGAATGTTTGTTCATTGTTTAGCCATGCGACTTTAGGCCTCTATAAAAAGGTCCTCCATCGAGCACCAAAAATTGCACCAAGTGAGTTGCTTGGTTACATTTCTATAGCTGACTTTAATATTGATTTTAATATTCTTTTAAAAACTAGTTTTACTCACAAAAATTTGAATATATTACTGAGAAGCGGAGGCTTTCGTCATCACAACTTGAGAAAGATTGAATTAAGTCGATCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

473

Amino Acids

53.95

Weight (kDa)

9.25

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03010 AT3G03010 AT3G03010 AT3G03010 AT3G03010 AT5G16870
fragaria_vesca	FvH4_7g34040 FvH4_7g34040 FvH4_7g34040 FvH4_7g34040
malus_domestica	MD01G1012300.v1.1 MD15G1337800.v1.1
prunus_persica	Prupe.2G326900_v2.0.a1
pyrus_communis	pycom01g04320 pycom17g16850
rosa_chinensis	RchiOBHm_Chr1g0384301
rosa_laevigata	RLG00000026050
rosa_multiflora	Rmu_sc0016737.1_g000002 Rmu_sc0018832.1_g000003
rosa_rugosa	Rorug01G0446600 Rorug01G0446700
rosa_samantha	Rh1AG472200 Rh1BG429900 Rh1CG442500 Rh1DG462500
rosa_wichuraiana	Rw1G040050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	204, 489
Acc36I	ACCTGC	1 cut(s)	1009
AccBSI	CCGCTC	1 cut(s)	1011
AciI	CCGC	2 cut(s)	1009, 1365
AclWI	GGATC	3 cut(s)	429, 601, 811
AcsI	RAATTY	2 cut(s)	253, 1342
AcuI	CTGAAG	1 cut(s)	986
AdeI	CACNNNGTG	1 cut(s)	1262
AfaI	GTAC	7 cut(s)	57, 84, 111, 190, 246, 270, 459
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	8 cut(s)	605, 832, 861, 877, 1108, 1169, 1348, 1400
AhlI	ACTAGT	1 cut(s)	1325
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AloI	GAACNNNNNNTCC	2 cut(s)	1174, 1206
AluBI	AGCT	3 cut(s)	656, 880, 1289
AluI	AGCT	3 cut(s)	656, 880, 1289
Alw21I	GWGCWC	2 cut(s)	1063, 1246
Alw44I	GTGCAC	1 cut(s)	1059
AlwI	GGATC	3 cut(s)	429, 601, 811
AoxI	GGCC	4 cut(s)	303, 618, 649, 1216
ApaLI	GTGCAC	1 cut(s)	1059
ApeKI	GCWGC	1 cut(s)	754
ApoI	RAATTY	2 cut(s)	253, 1342
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	619, 650, 1231
AsuHPI	GGTGA	1 cut(s)	360
AsuII	TTCGAA	1 cut(s)	951
AvaII	GGWCC	1 cut(s)	1231
BaeGI	GKGCMC	2 cut(s)	25, 1063
BanII	GRGCYC	1 cut(s)	645
Bbv12I	GWGCWC	2 cut(s)	1063, 1246
BbvI	GCAGC	1 cut(s)	741
BccI	CCATC	1 cut(s)	1245
BceAI	ACGGC	1 cut(s)	633
BcuI	ACTAGT	1 cut(s)	1325
BfaI	CTAG	2 cut(s)	410, 1326
BfmI	CTRYAG	1 cut(s)	1284
BfuAI	ACCTGC	1 cut(s)	1009
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	2 cut(s)	755, 1009
BlpI	GCTNAGC	1 cut(s)	746
BlsI	GCNGC	2 cut(s)	756, 1010
BmcAI	AGTACT	1 cut(s)	57
Bme18I	GGWCC	1 cut(s)	1231
BmgT120I	GGNCC	3 cut(s)	619, 650, 1231
Bpu1102I	GCTNAGC	1 cut(s)	746
Bpu14I	TTCGAA	1 cut(s)	951
BpuEI	CTTGAG	1 cut(s)	1408
BsaBI	GATNNNNATC	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse3DI	GCAATG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	420
BseGI	GGATG	1 cut(s)	512
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMI	GCAATG	1 cut(s)	287
BseMII	CTCAG	2 cut(s)	746, 1349
BseRI	GAGGAG	1 cut(s)	328
BseSI	GKGCMC	2 cut(s)	25, 1063
BseXI	GCAGC	1 cut(s)	741
BseYI	CCCAGC	1 cut(s)	652
BsgI	GTGCAG	1 cut(s)	740
BshFI	GGCC	4 cut(s)	305, 620, 651, 1218
BsiHKAI	GWGCWC	2 cut(s)	1063, 1246
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	4 cut(s)	305, 620, 651, 1218
Bsp119I	TTCGAA	1 cut(s)	951
Bsp1286I	GDGCHC	4 cut(s)	25, 645, 1063, 1246
Bsp1407I	TGTACA	1 cut(s)	268
Bsp143I	GATC	7 cut(s)	421, 593, 610, 768, 816, 1147, 1409
Bsp1720I	GCTNAGC	1 cut(s)	746
BspACI	CCGC	2 cut(s)	1009, 1365
BspANI	GGCC	4 cut(s)	305, 620, 651, 1218
BspCNI	CTCAG	2 cut(s)	745, 1350
BspMI	ACCTGC	1 cut(s)	1009
BspPI	GGATC	3 cut(s)	429, 601, 811
BspQI	GCTCTTC	1 cut(s)	633
BspT104I	TTCGAA	1 cut(s)	951
BsrBI	CCGCTC	1 cut(s)	1011
BsrDI	GCAATG	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	268
BssMI	GATC	7 cut(s)	421, 593, 610, 768, 816, 1147, 1409
Bst4CI	ACNGT	8 cut(s)	60, 87, 104, 131, 141, 158, 185, 239
Bst6I	CTCTTC	4 cut(s)	330, 577, 633, 933
BstAUI	TGTACA	1 cut(s)	268
BstBI	TTCGAA	1 cut(s)	951
BstC8I	GCNNGC	2 cut(s)	680, 752
BstDEI	CTNAG	4 cut(s)	732, 746, 772, 1358
BstF5I	GGATG	1 cut(s)	512
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	7 cut(s)	424, 596, 613, 771, 819, 1150, 1412
BstMBI	GATC	7 cut(s)	421, 593, 610, 768, 816, 1147, 1409
BstMWI	GCNNNNNNNGC	3 cut(s)	742, 751, 760
BstNSI	RCATGY	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	1284
BstSLI	GKGCMC	2 cut(s)	25, 1063
BstV1I	GCAGC	1 cut(s)	741
BstX2I	RGATCY	2 cut(s)	610, 816
BstYI	RGATCY	2 cut(s)	610, 816
BsuRI	GGCC	4 cut(s)	305, 620, 651, 1218
BtsCI	GGATG	1 cut(s)	512
BtsIMutI	CAGTG	6 cut(s)	109, 136, 163, 190, 244, 1010
BveI	ACCTGC	1 cut(s)	1009
Cac8I	GCNNGC	2 cut(s)	680, 752
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	619, 650, 1231
Csp6I	GTAC	7 cut(s)	56, 83, 110, 189, 245, 269, 458
CviAII	CATG	2 cut(s)	16, 1205
CviQI	GTAC	7 cut(s)	56, 83, 110, 189, 245, 269, 458
DdeI	CTNAG	4 cut(s)	732, 746, 772, 1358
DpnI	GATC	7 cut(s)	423, 595, 612, 770, 818, 1149, 1411
DpnII	GATC	7 cut(s)	421, 593, 610, 768, 816, 1147, 1409
DraI	TTTAAA	1 cut(s)	1320
DraIII	CACNNNGTG	1 cut(s)	1262
Eam1104I	CTCTTC	4 cut(s)	330, 577, 633, 933
EarI	CTCTTC	4 cut(s)	330, 577, 633, 933
Eco147I	AGGCCT	1 cut(s)	1218
Eco24I	GRGCYC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	1231
Eco57I	CTGAAG	1 cut(s)	986
EcoO109I	RGGNCCY	1 cut(s)	1231
EcoT38I	GRGCYC	1 cut(s)	645
FaeI	CATG	2 cut(s)	19, 1208
FatI	CATG	2 cut(s)	15, 1204
Fnu4HI	GCNGC	2 cut(s)	755, 1009
FokI	GGATG	1 cut(s)	499
FriOI	GRGCYC	1 cut(s)	645
Fsp4HI	GCNGC	2 cut(s)	755, 1009
FspBI	CTAG	2 cut(s)	410, 1326
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	2 cut(s)	755, 1009
GsaI	CCCAGC	1 cut(s)	656
HaeIII	GGCC	4 cut(s)	305, 620, 651, 1218
HhaI	GCGC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	19, 1208
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	878
HinfI	GANTC	2 cut(s)	740, 964
HpaI	GTTAAC	1 cut(s)	144
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	2 cut(s)	144, 1061
Hpy188I	TCNGA	3 cut(s)	593, 637, 1182
Hpy188III	TCNNGA	2 cut(s)	825, 989
Hpy8I	GTNNAC	2 cut(s)	144, 1061
HpyAV	CCTTC	1 cut(s)	722
HpyCH4III	ACNGT	8 cut(s)	60, 87, 104, 131, 141, 158, 185, 239
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	6 cut(s)	448, 757, 1018, 1061, 1089, 1256
HpyF10VI	GCNNNNNNNGC	3 cut(s)	742, 751, 760
HpyF3I	CTNAG	4 cut(s)	732, 746, 772, 1358
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	2 cut(s)	19, 1208
HspAI	GCGC	1 cut(s)	285
KspAI	GTTAAC	1 cut(s)	144
Kzo9I	GATC	7 cut(s)	421, 593, 610, 768, 816, 1147, 1409
LguI	GCTCTTC	1 cut(s)	633
LpnPI	CCDG	7 cut(s)	319, 480, 666, 736, 750, 972, 1004
Lsp1109I	GCAGC	1 cut(s)	741
MaeI	CTAG	2 cut(s)	410, 1326
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	2 cut(s)	706, 1274
MalI	GATC	7 cut(s)	423, 595, 612, 770, 818, 1149, 1411
MbiI	CCGCTC	1 cut(s)	1011
MboI	GATC	7 cut(s)	421, 593, 610, 768, 816, 1147, 1409
MflI	RGATCY	2 cut(s)	610, 816
MhlI	GDGCHC	4 cut(s)	25, 645, 1063, 1246
MlyI	GAGTC	1 cut(s)	734
MmeI	TCCRAC	2 cut(s)	571, 571
MnlI	CCTC	8 cut(s)	306, 309, 346, 847, 908, 1229, 1244, 1361
Mva1269I	GAATGC	1 cut(s)	426
MwoI	GCNNNNNNNGC	3 cut(s)	742, 751, 760
NdeII	GATC	7 cut(s)	421, 593, 610, 768, 816, 1147, 1409
NlaIII	CATG	2 cut(s)	19, 1208
NspI	RCATGY	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	951
PceI	AGGCCT	1 cut(s)	1218
PciI	ACATGT	1 cut(s)	15
PciSI	GCTCTTC	1 cut(s)	633
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	964
PkrI	GCNGC	2 cut(s)	756, 1010
PleI	GAGTC	1 cut(s)	734
PpsI	GAGTC	1 cut(s)	734
PpuMI	RGGWCCY	1 cut(s)	1231
PscI	ACATGT	1 cut(s)	15
PsiI	TTATAA	2 cut(s)	204, 489
Psp5II	RGGWCCY	1 cut(s)	1231
PspFI	CCCAGC	1 cut(s)	652
PspPI	GGNCC	3 cut(s)	619, 650, 1231
PspPPI	RGGWCCY	1 cut(s)	1231
PsuI	RGATCY	2 cut(s)	610, 816
RsaI	GTAC	7 cut(s)	57, 84, 111, 190, 246, 270, 459
RsaNI	GTAC	7 cut(s)	56, 83, 110, 189, 245, 269, 458
SapI	GCTCTTC	1 cut(s)	633
SatI	GCNGC	2 cut(s)	755, 1009
Sau3AI	GATC	7 cut(s)	421, 593, 610, 768, 816, 1147, 1409
Sau96I	GGNCC	3 cut(s)	619, 650, 1231
ScaI	AGTACT	1 cut(s)	57
SchI	GAGTC	1 cut(s)	734
SduI	GDGCHC	4 cut(s)	25, 645, 1063, 1246
SfcI	CTRYAG	1 cut(s)	1284
SfuI	TTCGAA	1 cut(s)	951
SinI	GGWCC	1 cut(s)	1231
SmlI	CTYRAG	1 cut(s)	1387
SmoI	CTYRAG	1 cut(s)	1387
SpeI	ACTAGT	1 cut(s)	1325
SseBI	AGGCCT	1 cut(s)	1218
SsiI	CCGC	2 cut(s)	1009, 1365
SspI	AATATT	2 cut(s)	1300, 1312
SspMI	CTAG	2 cut(s)	410, 1326
StuI	AGGCCT	1 cut(s)	1218
TaaI	ACNGT	8 cut(s)	60, 87, 104, 131, 141, 158, 185, 239
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	5 cut(s)	824, 951, 1150, 1240, 1408
TatI	WGTACW	3 cut(s)	55, 109, 268
TauI	GCSGC	1 cut(s)	1011
TfiI	GAWTC	1 cut(s)	964
TscAI	CASTG	6 cut(s)	109, 136, 163, 190, 244, 1010
TseI	GCWGC	1 cut(s)	754
TspGWI	ACGGA	1 cut(s)	957
TspRI	CASTG	6 cut(s)	109, 136, 163, 190, 244, 1010
VneI	GTGCAC	1 cut(s)	1059
VpaK11BI	GGWCC	1 cut(s)	1231
XapI	RAATTY	2 cut(s)	253, 1342
XceI	RCATGY	1 cut(s)	19
XspI	CTAG	2 cut(s)	410, 1326
ZrmI	AGTACT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.