Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006608

Physical Location & Seq

Genomic Coordinates Reverse (-)

14826369 .. 14828211

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g16850.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGATGATGGGGTTGGAGTTGGGGTTGGGGTGGGTGGGTGCGATTTTGGTAGGAGCGGGCTGGCTTGCTTTGGGTTATTGCTTTGGCGCTCGTTACCCTCCTTCTCGCATTATTTTCTCAGCCAGACTCGCTAAGCAGGCTGCCAATGATCGATCGTTAACAATGGAAAGAAGAAGAAGAACAAGGACAAGCCCAAAGATCCCCTCGAGATTGAAAACCTCGCCGACATTCTCCAAGATTTCAAAATGGTTTTGGTGGTCAGGAATCGATCTAAAGATGGGTAAAGGGAAAATTGCCGCTCAATGCAGCCATGCGACTTTAGGCCTCTATAAAAAGGTCCTCCATCGAGCACCAAAAGCTTTAAACAGGTGGGAGATGTGTGCACAGCCTAAAGTTGTTGTGAAAATAGAAAGTGAAGAAGATATGCTACTTTTGCAAGAAAGGGCTAAATTGCTGAACTTACCGACACACATTACAATTGATGCTGGCAGGACTCAGATTGCACCAAATTCAAGGACAGTGATGGCTATTCTTGGACCTGTTGAAGTGGTTGATGATGTAACAGGTGTACTGAAGCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTH2

Protein Analysis

195

Amino Acids

21.6

Weight (kDa)

10.29

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03010 AT3G03010 AT3G03010 AT3G03010 AT3G03010 AT5G16870
fragaria_vesca	FvH4_7g34040 FvH4_7g34040 FvH4_7g34040 FvH4_7g34040
malus_domestica	MD01G1012300.v1.1 MD15G1337800.v1.1
prunus_persica	Prupe.2G326900_v2.0.a1
pyrus_communis	pycom01g04320 pycom17g16850
rosa_chinensis	RchiOBHm_Chr1g0384301
rosa_laevigata	RLG00000026050
rosa_multiflora	Rmu_sc0016737.1_g000002 Rmu_sc0018832.1_g000003
rosa_rugosa	Rorug01G0446600 Rorug01G0446700
rosa_samantha	Rh1AG472200 Rh1BG429900 Rh1CG442500 Rh1DG462500
rosa_wichuraiana	Rw1G040050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	56, 299
AciI	CCGC	2 cut(s)	56, 297
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	508
AfaI	GTAC	1 cut(s)	570
AgsI	TTSAA	4 cut(s)	214, 243, 513, 545
AluBI	AGCT	2 cut(s)	359, 577
AluI	AGCT	2 cut(s)	359, 577
Alw21I	GWGCWC	2 cut(s)	352, 385
Alw44I	GTGCAC	1 cut(s)	381
AlwI	GGATC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	322
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	140, 306
ApoI	RAATTY	1 cut(s)	508
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	337, 536
AvaI	CYCGRG	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	337, 536
BaeGI	GKGCMC	1 cut(s)	385
BarI	GAAGNNNNNNTAC	2 cut(s)	411, 443
Bbv12I	GWGCWC	2 cut(s)	352, 385
BbvI	GCAGC	2 cut(s)	127, 318
BccI	CCATC	3 cut(s)	271, 351, 517
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	3 cut(s)	141, 297, 307
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	3 cut(s)	142, 298, 308
Bme18I	GGWCC	2 cut(s)	337, 536
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	2 cut(s)	337, 536
BmsI	GCATC	1 cut(s)	472
Bpu1102I	GCTNAGC	1 cut(s)	132
Bsa29I	ATCGAT	2 cut(s)	151, 267
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
BseCI	ATCGAT	2 cut(s)	151, 267
BseMII	CTCAG	2 cut(s)	132, 509
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	2 cut(s)	127, 318
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	324
BshVI	ATCGAT	2 cut(s)	151, 267
BsiEI	CGRYCG	1 cut(s)	155
BsiHKAI	GWGCWC	2 cut(s)	352, 385
BsiHKCI	CYCGRG	1 cut(s)	205
BsnI	GGCC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	352, 385
Bsp143I	GATC	4 cut(s)	148, 152, 198, 268
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	2 cut(s)	56, 297
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	2 cut(s)	131, 508
BspDI	ATCGAT	2 cut(s)	151, 267
BspPI	GGATC	1 cut(s)	193
BsrBI	CCGCTC	2 cut(s)	56, 299
BssMI	GATC	4 cut(s)	148, 152, 198, 268
Bst4CI	ACNGT	1 cut(s)	520
BstC8I	GCNNGC	5 cut(s)	58, 62, 66, 138, 487
BstDEI	CTNAG	3 cut(s)	118, 132, 495
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	4 cut(s)	151, 155, 201, 271
BstMBI	GATC	4 cut(s)	148, 152, 198, 268
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 137, 356, 433
BstSLI	GKGCMC	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	127, 318
BstX2I	RGATCY	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	198
Bsu15I	ATCGAT	2 cut(s)	151, 267
BsuRI	GGCC	1 cut(s)	324
BsuTUI	ATCGAT	2 cut(s)	151, 267
BtsIMutI	CAGTG	1 cut(s)	525
Cac8I	GCNNGC	5 cut(s)	58, 62, 66, 138, 487
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	2 cut(s)	337, 536
ClaI	ATCGAT	2 cut(s)	151, 267
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	1 cut(s)	311
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	3 cut(s)	118, 132, 495
DpnI	GATC	4 cut(s)	150, 154, 200, 270
DpnII	GATC	4 cut(s)	148, 152, 198, 268
DraI	TTTAAA	1 cut(s)	363
Eco147I	AGGCCT	1 cut(s)	324
Eco47I	GGWCC	2 cut(s)	337, 536
Eco88I	CYCGRG	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	337
FaeI	CATG	1 cut(s)	314
FaiI	YATR	3 cut(s)	312, 330, 425
FatI	CATG	1 cut(s)	310
FauI	CCCGC	1 cut(s)	49
Fnu4HI	GCNGC	3 cut(s)	141, 297, 307
Fsp4HI	GCNGC	3 cut(s)	141, 297, 307
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	3 cut(s)	141, 297, 307
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	324
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	3 cut(s)	126, 264, 493
HpaI	GTTAAC	1 cut(s)	159
Hpy166II	GTNNAC	3 cut(s)	159, 383, 569
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	2 cut(s)	207, 261
Hpy8I	GTNNAC	3 cut(s)	159, 383, 569
HpyAV	CCTTC	1 cut(s)	111
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	4 cut(s)	306, 383, 436, 503
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 137, 356, 433
HpyF3I	CTNAG	3 cut(s)	118, 132, 495
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	1 cut(s)	87
KspAI	GTTAAC	1 cut(s)	159
Kzo9I	GATC	4 cut(s)	148, 152, 198, 268
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	9 cut(s)	46, 122, 136, 246, 352, 471, 475, 549, 552
Lsp1109I	GCAGC	2 cut(s)	127, 318
LweI	GCATC	1 cut(s)	472
MaeIII	GTNAC	2 cut(s)	92, 559
MalI	GATC	4 cut(s)	150, 154, 200, 270
MbiI	CCGCTC	2 cut(s)	56, 299
MboI	GATC	4 cut(s)	148, 152, 198, 268
MboII	GAAGA	5 cut(s)	183, 186, 189, 428, 431
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	2 cut(s)	352, 385
MluCI	AATT	4 cut(s)	291, 449, 477, 508
MlyI	GAGTC	2 cut(s)	120, 487
MnlI	CCTC	5 cut(s)	108, 214, 229, 335, 350
MseI	TTAA	2 cut(s)	158, 362
MunI	CAATTG	1 cut(s)	477
MwoI	GCNNNNNNNGC	4 cut(s)	128, 137, 356, 433
NdeII	GATC	4 cut(s)	148, 152, 198, 268
NlaIII	CATG	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	264
PkrI	GCNGC	3 cut(s)	142, 298, 308
Ple19I	CGATCG	1 cut(s)	155
PleI	GAGTC	2 cut(s)	120, 487
PpsI	GAGTC	2 cut(s)	120, 487
PpuMI	RGGWCCY	1 cut(s)	337
Psp5II	RGGWCCY	1 cut(s)	337
PspPI	GGNCC	2 cut(s)	337, 536
PspPPI	RGGWCCY	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	198
PvuI	CGATCG	1 cut(s)	155
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
SaqAI	TTAA	2 cut(s)	158, 362
SatI	GCNGC	3 cut(s)	141, 297, 307
Sau3AI	GATC	4 cut(s)	148, 152, 198, 268
Sau96I	GGNCC	2 cut(s)	337, 536
SchI	GAGTC	2 cut(s)	120, 487
SduI	GDGCHC	2 cut(s)	352, 385
SetI	ASST	7 cut(s)	221, 339, 361, 371, 541, 568, 579
SfaNI	GCATC	1 cut(s)	472
Sfr274I	CTCGAG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	337, 536
SlaI	CTCGAG	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	4 cut(s)	291, 449, 477, 508
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	56, 297
StuI	AGGCCT	1 cut(s)	324
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	4 cut(s)	151, 206, 267, 346
TasI	AATT	4 cut(s)	291, 449, 477, 508
TatI	WGTACW	1 cut(s)	568
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	158, 362
Tru9I	TTAA	2 cut(s)	158, 362
TscAI	CASTG	1 cut(s)	525
TseI	GCWGC	2 cut(s)	140, 306
TspRI	CASTG	1 cut(s)	525
VneI	GTGCAC	1 cut(s)	381
VpaK11BI	GGWCC	2 cut(s)	337, 536
XapI	RAATTY	1 cut(s)	508
XhoI	CTCGAG	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.