Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006608

Physical Location & Seq

Genomic Coordinates Forward (+)

30140953 .. 30143843

Gene Structure 2891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G326900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGATGGGGTTGGGGTGGGTAGGTGCCATTTTAGTAGGAGCAGGTTGGCTTGCTTTGGGTTATTGCTTTGGTGCGCGTTACCCTCCTGCTCGCATTGTTTTGTCAGCTAGACTAGCTAAGAAAACTGCACTTGCTAATGATACTAATGGCAACAACAAGAAGAAGAAGAACAAGGACCCACTTGAGATTGATAACCTTGCTGACATTCTCCAAGATTTCAAAATGGTTTTGGTGGTCAGAAATGATCTAAAGATGGGTAAGGGGAAAATTGCCGCTCAATGCAGCCATGCGACTTTGGGCCTCTATAAAAAGCTCCTCCATCGAGCACCAAAAGCTTTAAACAGCTGGGAGATGTGTGCACAGCCGAAAGTTGTTGTGAAAATTGAAAGTGAAGAAGATATGCTAGTTTTGCAAGAGAGGGCAAAATCGCTGAAACTACCAACCCACATTACAATCGATGCTGGCAGGACTCAAATTGCACCAAATTCAAGGACAGTGATGGCTATTCTTGGACCCGTTGAGGTGGTTGACGATGTAACAGGTGGACTGAAACTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTH2

Protein Analysis

187

Amino Acids

20.24

Weight (kDa)

9.63

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006608)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03010 AT3G03010 AT3G03010 AT3G03010 AT3G03010 AT5G16870
fragaria_vesca	FvH4_7g34040 FvH4_7g34040 FvH4_7g34040 FvH4_7g34040
malus_domestica	MD01G1012300.v1.1 MD15G1337800.v1.1
prunus_persica	Prupe.2G326900_v2.0.a1
pyrus_communis	pycom01g04320 pycom17g16850
rosa_chinensis	RchiOBHm_Chr1g0384301
rosa_laevigata	RLG00000026050
rosa_multiflora	Rmu_sc0016737.1_g000002 Rmu_sc0018832.1_g000003
rosa_rugosa	Rorug01G0446600 Rorug01G0446700
rosa_samantha	Rh1AG472200 Rh1BG429900 Rh1CG442500 Rh1DG462500
rosa_wichuraiana	Rw1G040050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	32
AccB1I	GGYRCC	1 cut(s)	23
AccBSI	CCGCTC	1 cut(s)	275
AccII	CGCG	1 cut(s)	76
AciI	CCGC	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	484
AgsI	TTSAA	3 cut(s)	220, 386, 489
AluBI	AGCT	5 cut(s)	107, 116, 313, 335, 345
AluI	AGCT	5 cut(s)	107, 116, 313, 335, 345
Alw21I	GWGCWC	2 cut(s)	328, 361
Alw44I	GTGCAC	1 cut(s)	357
AoxI	GGCC	1 cut(s)	298
ApaLI	GTGCAC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	282
ApoI	RAATTY	1 cut(s)	484
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	3 cut(s)	175, 298, 512
AvaII	GGWCC	2 cut(s)	175, 512
BaeGI	GKGCMC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	23
Bbv12I	GWGCWC	2 cut(s)	328, 361
BbvI	GCAGC	1 cut(s)	294
BccI	CCATC	3 cut(s)	247, 327, 493
BfaI	CTAG	3 cut(s)	108, 113, 404
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	2 cut(s)	273, 283
BlsI	GCNGC	2 cut(s)	274, 284
Bme18I	GGWCC	2 cut(s)	175, 512
BmgT120I	GGNCC	3 cut(s)	175, 298, 512
BmiI	GGNNCC	3 cut(s)	25, 177, 514
BmsI	GCATC	1 cut(s)	448
BpuEI	CTTGAG	1 cut(s)	203
Bsa29I	ATCGAT	1 cut(s)	456
BseCI	ATCGAT	1 cut(s)	456
BseRI	GAGGAG	1 cut(s)	305
BseSI	GKGCMC	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	294
BseYI	CCCAGC	1 cut(s)	345
BsgI	GTGCAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	300
BshNI	GGYRCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	2 cut(s)	328, 361
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	2 cut(s)	328, 361
Bsp143I	GATC	1 cut(s)	244
BspACI	CCGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	300
BspDI	ATCGAT	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	25, 177, 514
BspMI	ACCTGC	1 cut(s)	32
BspT107I	GGYRCC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	275
BssMI	GATC	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	496
BstC8I	GCNNGC	3 cut(s)	51, 91, 463
BstDEI	CTNAG	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 332, 409
BstSLI	GKGCMC	1 cut(s)	361
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	300
BsuTUI	ATCGAT	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	3 cut(s)	51, 91, 463
CfoI	GCGC	1 cut(s)	76
Cfr13I	GGNCC	3 cut(s)	175, 298, 512
ClaI	ATCGAT	1 cut(s)	456
CviAII	CATG	1 cut(s)	287
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
DraI	TTTAAA	1 cut(s)	339
Eco47I	GGWCC	2 cut(s)	175, 512
EcoO109I	RGGNCCY	1 cut(s)	175
FaeI	CATG	1 cut(s)	290
FaiI	YATR	3 cut(s)	288, 306, 401
FatI	CATG	1 cut(s)	286
Fnu4HI	GCNGC	2 cut(s)	273, 283
Fsp4HI	GCNGC	2 cut(s)	273, 283
FspBI	CTAG	3 cut(s)	108, 113, 404
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	2 cut(s)	273, 283
GsaI	CCCAGC	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	300
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	290
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	333
HinfI	GANTC	1 cut(s)	469
Hpy166II	GTNNAC	3 cut(s)	359, 529, 545
Hpy188I	TCNGA	1 cut(s)	239
Hpy8I	GTNNAC	3 cut(s)	359, 529, 545
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	5 cut(s)	128, 282, 359, 412, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 332, 409
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	290
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	2 cut(s)	38, 318
LpnPI	CCDG	6 cut(s)	27, 99, 331, 447, 451, 525
Lsp1109I	GCAGC	1 cut(s)	294
LweI	GCATC	1 cut(s)	448
MaeI	CTAG	3 cut(s)	108, 113, 404
MaeIII	GTNAC	2 cut(s)	77, 535
MalI	GATC	1 cut(s)	246
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	1 cut(s)	244
MboII	GAAGA	5 cut(s)	172, 175, 178, 404, 407
MhlI	GDGCHC	2 cut(s)	328, 361
MluCI	AATT	4 cut(s)	267, 381, 474, 484
MlyI	GAGTC	1 cut(s)	463
MnlI	CCTC	5 cut(s)	93, 311, 326, 411, 514
MseI	TTAA	1 cut(s)	338
MspA1I	CMGCKG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	113, 332, 409
NdeII	GATC	1 cut(s)	244
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	3 cut(s)	25, 177, 514
PkrI	GCNGC	2 cut(s)	274, 284
PleI	GAGTC	1 cut(s)	463
PpsI	GAGTC	1 cut(s)	463
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	345
PspN4I	GGNNCC	3 cut(s)	25, 177, 514
PspPI	GGNCC	3 cut(s)	175, 298, 512
PspPPI	RGGWCCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	345
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	2 cut(s)	273, 283
Sau3AI	GATC	1 cut(s)	244
Sau96I	GGNCC	3 cut(s)	175, 298, 512
SchI	GAGTC	1 cut(s)	463
SduI	GDGCHC	2 cut(s)	328, 361
SfaNI	GCATC	1 cut(s)	448
SinI	GGWCC	2 cut(s)	175, 512
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	4 cut(s)	267, 381, 474, 484
SsiI	CCGC	1 cut(s)	273
SspMI	CTAG	3 cut(s)	108, 113, 404
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	2 cut(s)	322, 456
TasI	AATT	4 cut(s)	267, 381, 474, 484
TauI	GCSGC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	1 cut(s)	282
TspRI	CASTG	1 cut(s)	501
VneI	GTGCAC	1 cut(s)	357
VpaK11BI	GGWCC	2 cut(s)	175, 512
XapI	RAATTY	1 cut(s)	484
XspI	CTAG	3 cut(s)	108, 113, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.