Rorug01G0446700

peptidyl-tRNA hydrolase 2, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006608
Physical Location & Seq
Forward (+)
54243351 .. 54246292
2942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0446700.1

Sequence Viewer

Length: 891 bp
ATGATGGTCATGGCCTCAACTACAGCTTCTGCTGCTACATTTCTGTGTTCACCCAGAAGCACAAAGTCATCCATATACAACCCATCTTCTTCTTCTTCACTGACCTCACACCCCAAAAACCAAAGATTACATCTTTCTGCTGTGTTTCCTCAACTGGGTCTCAGCCCTTTCTCGCCATGGAGTGGCTTGAAGCATTTGGATGTCTCATTCAGACCCAAATCTGCAAAGTTAGGGAGGAAGGGAAGGTGCAAGGGTGTGGTGGTTTATGCTTCTCTGTTTGGGGTTGGAGCTCCTGAGGCCCTGGTTATTGGGGTTGTGGCTTTGTTGGTGTTTGGTCCCAAAGGTCTTGCTGAGGTTGCTCGAAATTTAGGAAAGACATTGCGTGCTTTTCAACCAACCATTAGAGAGCTTCAGGAAGTTTCTAGGGATTTCAAGAGCACCCTTGAAAAGGAGATTGGTCTCGATGACATTTCAAGTTCAACGATAAACACATACAATTCCAACAAAACCGGCACCACTTCAGCCTCTCCATCAACTACCAGTACTGGAGATTCCAAAACCACGACTGACCCCAATGGGGCGCCCTCTCCAAATAGAGCATACACCACCGAGGAGTACTTAAAGATCACAGAGGAGCAGCTAAAAGCATCAGCTGCCCAAAATCAGGGGCAGACATCGTCTCCGGTGGAAAGTCAGTCTCCAAATAGAGCATACACCACCGAGGAGTACTTAAAGATCACAGAGGAGCAGCTAAAAGCATCAGCTGCCCAAAATCAGGGGCAGACATCATCTCCAGTGGAAAGTCAGTCTCCACCTCAGGCTTCCGAAGGTACTGTTGAAGAAACTGCTGTTAGGACGCCTCCACCCCAACAATCTCAAAGTGAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTH2

Protein Analysis

296

Amino Acids

31.51

Weight (kDa)

8.75

Isoelectric Point (pI)

61.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TatA_B_E PF02416 93 - 138 3.6e-15 mttA/Hcf106 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 512, 580
AccB7I CCANNNNNTGG 1 cut(s) 182
AcsI RAATTY 1 cut(s) 364
AcuI CTGAAG 2 cut(s) 395, 504
AcyI GRCGYC 2 cut(s) 581, 857
AfaI GTAC 4 cut(s) 544, 617, 728, 832
AfiI CCNNNNNNNGG 6 cut(s) 155, 182, 448, 577, 664, 775
AgsI TTSAA 7 cut(s) 190, 392, 433, 446, 474, 480, 839
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 2 cut(s) 438, 470
AluBI AGCT 7 cut(s) 26, 290, 409, 640, 653, 751, 764
AluI AGCT 7 cut(s) 26, 290, 409, 640, 653, 751, 764
Alw21I GWGCWC 2 cut(s) 292, 440
Alw26I GTCTC 6 cut(s) 164, 208, 464, 684, 702, 813
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 2 cut(s) 12, 297
ApeKI GCWGC 5 cut(s) 32, 637, 653, 748, 764
ApoI RAATTY 1 cut(s) 364
AspLEI GCGC 1 cut(s) 583
AspS9I GGNCC 2 cut(s) 298, 335
AsuHPI GGTGA 1 cut(s) 42
AvaII GGWCC 1 cut(s) 335
AxyI CCTNAGG 2 cut(s) 294, 816
BanI GGYRCC 2 cut(s) 512, 580
BanII GRGCYC 1 cut(s) 292
Bbv12I GWGCWC 2 cut(s) 292, 440
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 5 cut(s) 19, 640, 649, 751, 760
BccI CCATC 2 cut(s) 91, 538
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 6 cut(s) 164, 208, 464, 684, 702, 813
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 21
BfoI RGCGCY 1 cut(s) 584
BisI GCNGC 5 cut(s) 33, 638, 654, 749, 765
BlsI GCNGC 5 cut(s) 34, 639, 655, 750, 766
BmcAI AGTACT 3 cut(s) 544, 617, 728
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 335
BmgT120I GGNCC 2 cut(s) 298, 335
BmiI GGNNCC 3 cut(s) 337, 514, 582
BmrFI CCNGG 1 cut(s) 302
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 2 cut(s) 656, 767
BmuI ACTGGG 1 cut(s) 164
BpmI CTGGAG 2 cut(s) 567, 777
Bpu10I CCTNAGC 1 cut(s) 351
BsaHI GRCGYC 2 cut(s) 581, 857
BsaI GGTCTC 2 cut(s) 164, 464
BsaJI CCNNGG 4 cut(s) 176, 300, 609, 720
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 4 cut(s) 664, 694, 775, 805
Bsc4I CCNNNNNNNGG 6 cut(s) 155, 182, 448, 577, 664, 775
Bse118I RCCGGY 1 cut(s) 509
Bse1I ACTGG 4 cut(s) 159, 540, 550, 794
Bse21I CCTNAGG 2 cut(s) 294, 816
Bse3DI GCAATG 1 cut(s) 377
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 4 cut(s) 176, 300, 609, 720
BseGI GGATG 2 cut(s) 68, 205
BseLI CCNNNNNNNGG 6 cut(s) 155, 182, 448, 577, 664, 775
BseMI GCAATG 1 cut(s) 377
BseMII CTCAG 4 cut(s) 175, 285, 342, 830
BseNI ACTGG 4 cut(s) 159, 540, 550, 794
BseRI GAGGAG 4 cut(s) 626, 647, 737, 758
BseXI GCAGC 5 cut(s) 19, 640, 649, 751, 760
BshFI GGCC 2 cut(s) 14, 299
BshNI GGYRCC 2 cut(s) 512, 580
BsiHKAI GWGCWC 2 cut(s) 292, 440
BsiSI CCGG 2 cut(s) 510, 683
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 6 cut(s) 155, 182, 448, 577, 664, 775
BsmAI GTCTC 6 cut(s) 164, 208, 464, 684, 702, 813
BsmBI CGTCTC 1 cut(s) 684
BsmFI GGGAC 1 cut(s) 321
BsnI GGCC 2 cut(s) 14, 299
Bso31I GGTCTC 2 cut(s) 164, 464
Bsp1286I GDGCHC 2 cut(s) 292, 440
Bsp143I GATC 2 cut(s) 624, 735
Bsp19I CCATGG 1 cut(s) 176
BspANI GGCC 2 cut(s) 14, 299
BspCNI CTCAG 4 cut(s) 174, 286, 343, 829
BspLI GGNNCC 3 cut(s) 337, 514, 582
BspT107I GGYRCC 2 cut(s) 512, 580
BspTNI GGTCTC 2 cut(s) 164, 464
BsrDI GCAATG 1 cut(s) 377
BsrFI RCCGGY 1 cut(s) 509
BsrI ACTGG 4 cut(s) 159, 540, 550, 794
BssAI RCCGGY 1 cut(s) 509
BssECI CCNNGG 4 cut(s) 176, 300, 609, 720
BssMI GATC 2 cut(s) 624, 735
BssNI GRCGYC 2 cut(s) 581, 857
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 302
Bst4CI ACNGT 1 cut(s) 835
BstACI GRCGYC 2 cut(s) 581, 857
BstAPI GCANNNNNTGC 2 cut(s) 653, 764
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 4 cut(s) 161, 294, 351, 816
BstDSI CCRYGG 1 cut(s) 176
BstENI CCTNNNNNAGG 1 cut(s) 446
BstF5I GGATG 2 cut(s) 68, 205
BstH2I RGCGCY 1 cut(s) 584
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 2 cut(s) 627, 738
BstMAI GTCTC 6 cut(s) 164, 208, 464, 684, 702, 813
BstMBI GATC 2 cut(s) 624, 735
BstMWI GCNNNNNNNGC 5 cut(s) 32, 296, 356, 653, 764
BstNI CCWGG 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 300
BstSFI CTRYAG 1 cut(s) 21
BstV1I GCAGC 5 cut(s) 19, 640, 649, 751, 760
Bsu36I CCTNAGG 2 cut(s) 294, 816
BsuRI GGCC 2 cut(s) 14, 299
BtgI CCRYGG 1 cut(s) 176
BtsCI GGATG 2 cut(s) 68, 205
BtsIMutI CAGTG 2 cut(s) 98, 801
Cac8I GCNNGC 1 cut(s) 384
CaiI CAGNNNCTG 1 cut(s) 29
CfoI GCGC 1 cut(s) 583
Cfr10I RCCGGY 1 cut(s) 509
Cfr13I GGNCC 2 cut(s) 298, 335
CseI GACGC 1 cut(s) 865
Csp6I GTAC 4 cut(s) 543, 616, 727, 831
CviAII CATG 2 cut(s) 10, 177
CviQI GTAC 4 cut(s) 543, 616, 727, 831
DdeI CTNAG 4 cut(s) 161, 294, 351, 816
DinI GGCGCC 1 cut(s) 582
DpnI GATC 2 cut(s) 626, 737
DpnII GATC 2 cut(s) 624, 735
Ecl136II GAGCTC 1 cut(s) 290
Eco130I CCWWGG 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 292
Eco31I GGTCTC 2 cut(s) 164, 464
Eco47I GGWCC 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 290
Eco57I CTGAAG 2 cut(s) 395, 504
Eco81I CCTNAGG 2 cut(s) 294, 816
EcoICRI GAGCTC 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 292
EgeI GGCGCC 1 cut(s) 582
EheI GGCGCC 1 cut(s) 582
ErhI CCWWGG 1 cut(s) 176
Esp3I CGTCTC 1 cut(s) 684
FaeI CATG 2 cut(s) 13, 180
FaiI YATR 9 cut(s) 11, 74, 76, 178, 267, 493, 601, 712, 889
FaqI GGGAC 1 cut(s) 321
FatI CATG 2 cut(s) 9, 176
Fnu4HI GCNGC 5 cut(s) 33, 638, 654, 749, 765
FokI GGATG 2 cut(s) 55, 212
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 5 cut(s) 33, 638, 654, 749, 765
FspBI CTAG 1 cut(s) 423
GlaI GCGC 1 cut(s) 582
GluI GCNGC 5 cut(s) 33, 638, 654, 749, 765
GsuI CTGGAG 2 cut(s) 567, 777
HaeII RGCGCY 1 cut(s) 584
HaeIII GGCC 2 cut(s) 14, 299
HapII CCGG 2 cut(s) 510, 683
HgaI GACGC 1 cut(s) 865
HhaI GCGC 1 cut(s) 583
Hin1I GRCGYC 2 cut(s) 581, 857
Hin1II CATG 2 cut(s) 13, 180
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HinfI GANTC 2 cut(s) 551, 884
HpaII CCGG 2 cut(s) 510, 683
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 2 cut(s) 212, 826
Hpy188III TCNNGA 4 cut(s) 293, 413, 433, 461
Hpy8I GTNNAC 1 cut(s) 50
HpyAV CCTTC 3 cut(s) 232, 237, 821
HpyCH4III ACNGT 1 cut(s) 835
HpyCH4V TGCA 2 cut(s) 224, 249
HpyF10VI GCNNNNNNNGC 5 cut(s) 32, 296, 356, 653, 764
HpyF3I CTNAG 4 cut(s) 161, 294, 351, 816
Hsp92I GRCGYC 2 cut(s) 581, 857
Hsp92II CATG 2 cut(s) 13, 180
HspAI GCGC 1 cut(s) 581
KasI GGCGCC 1 cut(s) 580
Kzo9I GATC 2 cut(s) 624, 735
LmnI GCTCC 4 cut(s) 287, 295, 634, 745
Lsp1109I GCAGC 5 cut(s) 19, 640, 649, 751, 760
LweI GCATC 2 cut(s) 656, 767
MaeI CTAG 1 cut(s) 423
MalI GATC 2 cut(s) 626, 737
MboI GATC 2 cut(s) 624, 735
MboII GAAGA 5 cut(s) 78, 81, 84, 87, 851
MhlI GDGCHC 2 cut(s) 292, 440
MluCI AATT 2 cut(s) 364, 496
Mly113I GGCGCC 1 cut(s) 581
MmeI TCCRAC 2 cut(s) 265, 525
MseI TTAA 2 cut(s) 620, 731
MslI CAYNNNNRTG 2 cut(s) 43, 198
MspA1I CMGCKG 2 cut(s) 653, 764
MspI CCGG 2 cut(s) 510, 683
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
MwoI GCNNNNNNNGC 5 cut(s) 32, 296, 356, 653, 764
NarI GGCGCC 1 cut(s) 581
NcoI CCATGG 1 cut(s) 176
NdeII GATC 2 cut(s) 624, 735
NlaIII CATG 2 cut(s) 13, 180
NlaIV GGNNCC 3 cut(s) 337, 514, 582
PfeI GAWTC 1 cut(s) 551
PflFI GACNNNGTC 1 cut(s) 676
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 5 cut(s) 34, 639, 655, 750, 766
PluTI GGCGCC 1 cut(s) 584
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 300
PspGI CCWGG 1 cut(s) 300
PspN4I GGNNCC 3 cut(s) 337, 514, 582
PspPI GGNCC 2 cut(s) 298, 335
PstNI CAGNNNCTG 1 cut(s) 29
PsyI GACNNNGTC 1 cut(s) 676
PvuII CAGCTG 2 cut(s) 653, 764
RsaI GTAC 4 cut(s) 544, 617, 728, 832
RsaNI GTAC 4 cut(s) 543, 616, 727, 831
RseI CAYNNNNRTG 2 cut(s) 43, 198
SacI GAGCTC 1 cut(s) 292
SaqAI TTAA 2 cut(s) 620, 731
SatI GCNGC 5 cut(s) 33, 638, 654, 749, 765
Sau3AI GATC 2 cut(s) 624, 735
Sau96I GGNCC 2 cut(s) 298, 335
ScaI AGTACT 3 cut(s) 544, 617, 728
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 2 cut(s) 292, 440
SfaNI GCATC 2 cut(s) 656, 767
SfcI CTRYAG 1 cut(s) 21
SfoI GGCGCC 1 cut(s) 582
SinI GGWCC 1 cut(s) 335
SmiMI CAYNNNNRTG 2 cut(s) 43, 198
Sse9I AATT 2 cut(s) 364, 496
SspDI GGCGCC 1 cut(s) 580
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 835
TaqI TCGA 2 cut(s) 361, 462
TasI AATT 2 cut(s) 364, 496
TatI WGTACW 3 cut(s) 542, 615, 726
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 2 cut(s) 620, 731
Tru9I TTAA 2 cut(s) 620, 731
TscAI CASTG 2 cut(s) 105, 801
TseI GCWGC 5 cut(s) 32, 637, 653, 748, 764
TspRI CASTG 2 cut(s) 105, 801
Tth111I GACNNNGTC 1 cut(s) 676
Van91I CCANNNNNTGG 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 335
XagI CCTNNNNNAGG 1 cut(s) 446
XapI RAATTY 1 cut(s) 364
XspI CTAG 1 cut(s) 423
ZrmI AGTACT 3 cut(s) 544, 617, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.