AT5G16870

Peptidyl-tRNA hydrolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006608
Physical Location & Seq
Reverse (-)
5546811 .. 5548777
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16870.1

Sequence Viewer

Length: 510 bp
ATGGATTTGACGTGGTTAAGTGCCCTAATTGTTGGAGCTGCACTTGGATACTGCATTGGCACTCGCCGTTCCAAACCTGTTGTTGCTGCTGTTGATAAGGATATCAAAACTCAATCCTCCAAAAGTCCACTCGAGATTGAGAAACTCGCTGATATTCTCGATGATTTCAAGATGGTTTTGGTGGTGAGAAATGATCTTAAAATGGGTAAAGGAAAGATTGCAGCTCAATGCAGTCATGCAACTTTAGGATTATACAAGAAGCTTGTTCGTCGAGCGCCAAAAGCATTGGACTGCTGGGAGGAATGTGCACAGCCAAAAGTTGTTGTGAAAATCGAGGACGAGGACGAGATGCTAGAATTGCAAGAAAGAGCTAAATCCCTTAAACTGCCTACCCATATCACCATTGATGCTGGAAGAACACAGATTGCCCCAAATTCAAGGACGGTTATGGCTATTCTTGGACCAGTCGAAGTTGTTGATGAAGTAACAGGTGGACTAAAGCTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTH2

Protein Analysis

169

Amino Acids

18.51

Weight (kDa)

8.31

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTH2 PF01981 56 - 169 2.4e-43 Peptidyl-tRNA hydrolase PTH2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 433
AgsI TTSAA 2 cut(s) 169, 438
AjiI CACGTC 1 cut(s) 12
AluBI AGCT 5 cut(s) 38, 224, 262, 371, 502
AluI AGCT 5 cut(s) 38, 224, 262, 371, 502
Alw21I GWGCWC 1 cut(s) 310
Alw44I GTGCAC 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 131
ApaLI GTGCAC 1 cut(s) 306
ApeKI GCWGC 3 cut(s) 38, 86, 221
ApoI RAATTY 1 cut(s) 433
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 1 cut(s) 461
AsuHPI GGTGA 2 cut(s) 196, 391
AvaI CYCGRG 1 cut(s) 131
AvaII GGWCC 1 cut(s) 461
BaeGI GKGCMC 2 cut(s) 25, 310
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 3 cut(s) 25, 73, 233
BccI CCATC 1 cut(s) 166
BceAI ACGGC 1 cut(s) 51
BciVI GTATCC 1 cut(s) 41
BfaI CTAG 1 cut(s) 353
BfoI RGCGCY 1 cut(s) 278
BfuI GTATCC 1 cut(s) 41
BisI GCNGC 3 cut(s) 39, 87, 222
BlsI GCNGC 3 cut(s) 40, 88, 223
Bme18I GGWCC 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 131
BmgBI CACGTC 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 461
BmsI GCATC 2 cut(s) 339, 397
Bse1I ACTGG 1 cut(s) 464
BseNI ACTGG 1 cut(s) 464
BseSI GKGCMC 2 cut(s) 25, 310
BseXI GCAGC 3 cut(s) 25, 73, 233
BseYI CCCAGC 1 cut(s) 294
BsgI GTGCAG 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 131
BsoBI CYCGRG 1 cut(s) 131
Bsp1286I GDGCHC 2 cut(s) 25, 310
Bsp143I GATC 1 cut(s) 193
BsrI ACTGG 1 cut(s) 464
BssMI GATC 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 445
BstH2I RGCGCY 1 cut(s) 278
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 281, 358
BstSLI GKGCMC 2 cut(s) 25, 310
BstV1I GCAGC 3 cut(s) 25, 73, 233
BsuI GTATCC 1 cut(s) 41
BtrI CACGTC 1 cut(s) 12
CfoI GCGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 461
CviAII CATG 1 cut(s) 236
CviJI RGCY 7 cut(s) 38, 224, 262, 313, 371, 452, 502
CviKI_1 RGCY 7 cut(s) 38, 224, 262, 313, 371, 452, 502
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 461
Eco88I CYCGRG 1 cut(s) 131
EcoRV GATATC 1 cut(s) 103
FaeI CATG 1 cut(s) 239
FaiI YATR 4 cut(s) 237, 253, 396, 449
FatI CATG 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 39, 87, 222
Fsp4HI GCNGC 3 cut(s) 39, 87, 222
FspBI CTAG 1 cut(s) 353
GlaI GCGC 1 cut(s) 276
GluI GCNGC 3 cut(s) 39, 87, 222
GsaI CCCAGC 1 cut(s) 298
HaeII RGCGCY 1 cut(s) 278
HhaI GCGC 1 cut(s) 277
Hin1II CATG 1 cut(s) 239
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HindIII AAGCTT 2 cut(s) 260, 500
HphI GGTGA 2 cut(s) 196, 391
Hpy166II GTNNAC 3 cut(s) 128, 308, 494
Hpy188III TCNNGA 3 cut(s) 133, 158, 169
Hpy8I GTNNAC 3 cut(s) 128, 308, 494
Hpy99I CGWCG 1 cut(s) 273
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 7 cut(s) 41, 54, 221, 231, 239, 308, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 358
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 1 cut(s) 239
HspAI GCGC 1 cut(s) 275
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 5 cut(s) 90, 280, 396, 474, 477
Lsp1109I GCAGC 3 cut(s) 25, 73, 233
LweI GCATC 2 cut(s) 339, 397
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 484
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 1 cut(s) 426
MhlI GDGCHC 2 cut(s) 25, 310
MluCI AATT 3 cut(s) 27, 356, 433
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 4 cut(s) 127, 292, 328, 334
MseI TTAA 3 cut(s) 17, 198, 381
MwoI GCNNNNNNNGC 2 cut(s) 281, 358
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 131
PkrI GCNGC 3 cut(s) 40, 88, 223
PspFI CCCAGC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 461
SaqAI TTAA 3 cut(s) 17, 198, 381
SatI GCNGC 3 cut(s) 39, 87, 222
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 461
SduI GDGCHC 2 cut(s) 25, 310
SetI ASST 8 cut(s) 14, 40, 79, 226, 264, 373, 493, 504
SfaNI GCATC 2 cut(s) 339, 397
Sfr274I CTCGAG 1 cut(s) 131
SinI GGWCC 1 cut(s) 461
SlaI CTCGAG 1 cut(s) 131
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 27, 356, 433
SspMI CTAG 1 cut(s) 353
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 1 cut(s) 14
TaqI TCGA 5 cut(s) 132, 159, 271, 333, 468
TasI AATT 3 cut(s) 27, 356, 433
Tru1I TTAA 3 cut(s) 17, 198, 381
Tru9I TTAA 3 cut(s) 17, 198, 381
TseI GCWGC 3 cut(s) 38, 86, 221
TspDTI ATGAA 1 cut(s) 495
VneI GTGCAC 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 1 cut(s) 433
XhoI CTCGAG 1 cut(s) 131
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.