AT3G03660

WUSCHEL-related homeobox

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009573
Physical Location & Seq
Reverse (-)
889166 .. 892229
3064 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03660.4

Sequence Viewer

Length: 807 bp
ATGGACCAAGAACAAACACCACATAGCCCAACCCGCCATAGTCGCTCACCCCCATCCTCCGCCTCCGGTTCCACCTCAGCAGAACCGGTTCGGTCCCGATGGTCACCTAAACCGGAACAAATACTCATACTTGAGTCGATCTTCCACAGTGGTATGGTTAACCCTCCCAAAGAAGAGACGGTAAGGATAAGAAAGATGCTCGAGAAATTTGGCGCGGTGGGAGATGCAAATGTCTTCTATTGGTTTCAAAACCGGCGGTCAAGGTCCCGTCGGAGACAGCGACAGCTACAGGCTGCAGCTGCAGCAGCGGACGCAACCACCAACACTTGTGACCAGACTATGATGGTGAGCAACAGCTTACCACATCATAGTGGGAGTGATTTGGGGTTTGGAGGTTGTAGCACTTCTTCTAATTACTTATTTGCTAGCTCTTCTTCTTCTTATGGTGGTGGATGTGATAATCAAAGCAATAGTGGCATGGAGAATCTCTTAACAATGTCTGGCCAAATGAGTTACCATGAAGCTACTCATCATCATTATCAAAATCATAGCTCAAATGTCACATCGATTTTGTGCCCATCTGATCAAAACTCCAATTTTCAATACCAACAAGGGGCTATAACGGTGTTTATAAACGGAGTTCCGACAGAAGTGACGAGAGGAGGAATAGACATGAAAGCAACGTTTGGAGAAGATTTGGTTTTGGTGCATTCCTCAGGTGTTCCTCTTCCTACTGATGAGTTTGGTTTTTTGATGCATAGCTTACAACATGGTGAAGCTTATTTCCTGGTTCCAAGACAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Homeobox

Protein Analysis

268

Amino Acids

29.42

Weight (kDa)

6.49

Isoelectric Point (pI)

69.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 31 - 91 9.2e-11 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009573)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03660 AT3G03660 AT3G03660 AT3G03660 AT5G17810 AT5G17810 AT5G17810
fragaria_vesca FvH4_1g29830
malus_domestica MD12G1012600.v1.1 MD14G1010400.v1.1
prunus_persica Prupe.7G016600_v2.0.a1
pyrus_communis pycom12g01010
rosa_chinensis RchiOBHm_Chr3g0495921
rosa_laevigata RLG00000022580
rosa_multiflora Rmu_sc0010892.1_g000017
rosa_roxburghii Rroxscaffold_6G00389910
rosa_rugosa Rorug03G0277600
rosa_samantha Rh3AG325000 Rh3BG361000 Rh3CG357300 Rh3DG360600
rosa_wichuraiana Rw3G028380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
AccII CGCG 1 cut(s) 215
AciI CCGC 5 cut(s) 34, 60, 215, 256, 308
AclI AACGTT 1 cut(s) 683
AcoI YGGCCR 1 cut(s) 502
AcsI RAATTY 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 613
AgeI ACCGGT 1 cut(s) 85
AgsI TTSAA 2 cut(s) 248, 602
AjnI CCWGG 1 cut(s) 786
AluBI AGCT 8 cut(s) 286, 299, 357, 429, 524, 552, 762, 779
AluI AGCT 8 cut(s) 286, 299, 357, 429, 524, 552, 762, 779
Alw26I GTCTC 2 cut(s) 170, 268
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 1 cut(s) 502
ApeKI GCWGC 5 cut(s) 293, 296, 299, 302, 305
ApoI RAATTY 1 cut(s) 206
AsiGI ACCGGT 1 cut(s) 85
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 3 cut(s) 4, 93, 264
AsuHPI GGTGA 4 cut(s) 39, 96, 358, 785
AsuNHI GCTAGC 1 cut(s) 425
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 3 cut(s) 4, 93, 264
AxyI CCTNAGG 1 cut(s) 715
BaeGI GKGCMC 1 cut(s) 578
BalI TGGCCA 1 cut(s) 504
BarI GAAGNNNNNNTAC 2 cut(s) 391, 423
BbsI GAAGAC 1 cut(s) 226
BbvCI CCTCAGC 1 cut(s) 76
BbvI GCAGC 5 cut(s) 280, 286, 308, 314, 317
BccI CCATC 4 cut(s) 61, 93, 337, 586
BciT130I CCWGG 1 cut(s) 788
BclI TGATCA 1 cut(s) 583
BcoDI GTCTC 2 cut(s) 170, 268
BfaI CTAG 1 cut(s) 426
BfmI CTRYAG 3 cut(s) 287, 294, 300
BisI GCNGC 5 cut(s) 294, 297, 300, 303, 306
BlsI GCNGC 5 cut(s) 295, 298, 301, 304, 307
Bme1390I CCNGG 1 cut(s) 788
Bme18I GGWCC 3 cut(s) 4, 93, 264
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 3 cut(s) 4, 93, 264
BmiI GGNNCC 4 cut(s) 70, 95, 266, 792
BmrFI CCNGG 1 cut(s) 788
BmsI GCATC 3 cut(s) 186, 214, 744
BmtI GCTAGC 1 cut(s) 429
BpiI GAAGAC 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 152
Bsa29I ATCGAT 1 cut(s) 566
BsaWI WCCGGW 3 cut(s) 65, 85, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 613
Bse118I RCCGGY 2 cut(s) 85, 252
Bse21I CCTNAGG 1 cut(s) 715
BseBI CCWGG 1 cut(s) 788
BseCI ATCGAT 1 cut(s) 566
BseGI GGATG 2 cut(s) 53, 458
BseLI CCNNNNNNNGG 1 cut(s) 613
BseMII CTCAG 2 cut(s) 90, 729
BseRI GAGGAG 1 cut(s) 675
BseSI GKGCMC 1 cut(s) 578
BseXI GCAGC 5 cut(s) 280, 286, 308, 314, 317
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 1 cut(s) 504
BshTI ACCGGT 1 cut(s) 85
BshVI ATCGAT 1 cut(s) 566
BsiHKCI CYCGRG 1 cut(s) 200
BsiSI CCGG 4 cut(s) 66, 86, 113, 253
BslFI GGGAC 2 cut(s) 79, 250
BslI CCNNNNNNNGG 1 cut(s) 613
BsmAI GTCTC 2 cut(s) 170, 268
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 2 cut(s) 79, 250
BsmI GAATGC 1 cut(s) 709
BsnI GGCC 1 cut(s) 504
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 578
Bsp143I GATC 2 cut(s) 138, 583
BspACI CCGC 5 cut(s) 34, 60, 215, 256, 308
BspANI GGCC 1 cut(s) 504
BspCNI CTCAG 2 cut(s) 89, 728
BspDI ATCGAT 1 cut(s) 566
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 4 cut(s) 70, 95, 266, 792
BspMAI CTGCAG 2 cut(s) 298, 304
BspOI GCTAGC 1 cut(s) 429
BspQI GCTCTTC 1 cut(s) 436
BsrFI RCCGGY 2 cut(s) 85, 252
BssAI RCCGGY 2 cut(s) 85, 252
BssMI GATC 2 cut(s) 138, 583
Bst2UI CCWGG 1 cut(s) 788
Bst4CI ACNGT 3 cut(s) 149, 181, 625
Bst6I CTCTTC 3 cut(s) 168, 436, 732
BstC8I GCNNGC 1 cut(s) 427
BstDEI CTNAG 2 cut(s) 76, 715
BstEII GGTNACC 1 cut(s) 102
BstF5I GGATG 2 cut(s) 53, 458
BstFNI CGCG 1 cut(s) 215
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 2 cut(s) 141, 586
BstMAI GTCTC 2 cut(s) 170, 268
BstMBI GATC 2 cut(s) 138, 583
BstMWI GCNNNNNNNGC 7 cut(s) 33, 42, 299, 302, 305, 311, 474
BstNI CCWGG 1 cut(s) 788
BstPI GGTNACC 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 786
BstSFI CTRYAG 3 cut(s) 287, 294, 300
BstSLI GKGCMC 1 cut(s) 578
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 5 cut(s) 280, 286, 308, 314, 317
BstV2I GAAGAC 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 566
Bsu36I CCTNAGG 1 cut(s) 715
BsuRI GGCC 1 cut(s) 504
BsuTUI ATCGAT 1 cut(s) 566
BtsCI GGATG 2 cut(s) 53, 458
BtsIMutI CAGTG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 427
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 2 cut(s) 85, 252
Cfr13I GGNCC 3 cut(s) 4, 93, 264
ClaI ATCGAT 1 cut(s) 566
CseI GACGC 1 cut(s) 320
CspAI ACCGGT 1 cut(s) 85
CviAII CATG 5 cut(s) 478, 518, 673, 770, 804
DdeI CTNAG 2 cut(s) 76, 715
DpnI GATC 2 cut(s) 140, 585
DpnII GATC 2 cut(s) 138, 583
EaeI YGGCCR 1 cut(s) 502
Eam1104I CTCTTC 3 cut(s) 168, 436, 732
EarI CTCTTC 3 cut(s) 168, 436, 732
EciI GGCGGA 1 cut(s) 49
Eco47I GGWCC 3 cut(s) 4, 93, 264
Eco81I CCTNAGG 1 cut(s) 715
Eco88I CYCGRG 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 264
EcoO65I GGTNACC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 786
EcoT22I ATGCAT 1 cut(s) 759
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 5 cut(s) 481, 521, 676, 773, 807
FaqI GGGAC 2 cut(s) 79, 250
FatI CATG 5 cut(s) 477, 517, 672, 769, 803
FauI CCCGC 1 cut(s) 41
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 5 cut(s) 294, 297, 300, 303, 306
FokI GGATG 2 cut(s) 40, 465
Fsp4HI GCNGC 5 cut(s) 294, 297, 300, 303, 306
FspBI CTAG 1 cut(s) 426
GlaI GCGC 1 cut(s) 214
GluI GCNGC 5 cut(s) 294, 297, 300, 303, 306
HaeIII GGCC 1 cut(s) 504
HapII CCGG 4 cut(s) 66, 86, 113, 253
HgaI GACGC 1 cut(s) 320
HhaI GCGC 1 cut(s) 215
Hin1II CATG 5 cut(s) 481, 521, 676, 773, 807
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 1 cut(s) 777
HinfI GANTC 2 cut(s) 134, 484
HpaI GTTAAC 1 cut(s) 160
HpaII CCGG 4 cut(s) 66, 86, 113, 253
HphI GGTGA 4 cut(s) 39, 96, 358, 785
Hpy166II GTNNAC 1 cut(s) 160
Hpy188I TCNGA 3 cut(s) 273, 583, 645
Hpy188III TCNNGA 2 cut(s) 96, 202
Hpy8I GTNNAC 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 273
HpyCH4III ACNGT 3 cut(s) 149, 181, 625
HpyCH4IV ACGT 1 cut(s) 683
HpyCH4V TGCA 5 cut(s) 227, 296, 302, 709, 757
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 42, 299, 302, 305, 311, 474
HpyF3I CTNAG 2 cut(s) 76, 715
HpySE526I ACGT 1 cut(s) 683
Hsp92II CATG 5 cut(s) 481, 521, 676, 773, 807
HspAI GCGC 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 583
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 2 cut(s) 138, 583
LguI GCTCTTC 1 cut(s) 436
Lsp1109I GCAGC 5 cut(s) 280, 286, 308, 314, 317
LweI GCATC 3 cut(s) 186, 214, 744
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 683
MaeIII GTNAC 5 cut(s) 102, 329, 512, 559, 652
MalI GATC 2 cut(s) 140, 585
MboI GATC 2 cut(s) 138, 583
MboII GAAGA 9 cut(s) 133, 185, 226, 399, 423, 426, 429, 704, 719
MhlI GDGCHC 1 cut(s) 578
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 3 cut(s) 206, 412, 595
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 251, 668
MnlI CCTC 9 cut(s) 67, 73, 85, 174, 386, 653, 656, 724, 735
Mox20I TGGCCA 1 cut(s) 504
Mph1103I ATGCAT 1 cut(s) 759
MroXI GAANNNNTTC 1 cut(s) 87
MscI TGGCCA 1 cut(s) 504
MseI TTAA 2 cut(s) 159, 491
MslI CAYNNNNRTG 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 504
MspA1I CMGCKG 2 cut(s) 299, 308
MspI CCGG 4 cut(s) 66, 86, 113, 253
MspR9I CCNGG 1 cut(s) 788
Mva1269I GAATGC 1 cut(s) 709
MvaI CCWGG 1 cut(s) 788
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 7 cut(s) 33, 42, 299, 302, 305, 311, 474
NdeII GATC 2 cut(s) 138, 583
NheI GCTAGC 1 cut(s) 425
NlaIII CATG 5 cut(s) 481, 521, 676, 773, 807
NlaIV GGNNCC 4 cut(s) 70, 95, 266, 792
NmuCI GTSAC 4 cut(s) 102, 329, 559, 652
NsiI ATGCAT 1 cut(s) 759
PaeR7I CTCGAG 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 436
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PctI GAATGC 1 cut(s) 709
PdmI GAANNNNTTC 1 cut(s) 87
PfeI GAWTC 1 cut(s) 484
PinAI ACCGGT 1 cut(s) 85
PkrI GCNGC 5 cut(s) 295, 298, 301, 304, 307
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PpuMI RGGWCCY 1 cut(s) 264
PsiI TTATAA 1 cut(s) 632
Psp1406I AACGTT 1 cut(s) 683
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 786
PspEI GGTNACC 1 cut(s) 102
PspGI CCWGG 1 cut(s) 786
PspN4I GGNNCC 4 cut(s) 70, 95, 266, 792
PspPI GGNCC 3 cut(s) 4, 93, 264
PspPPI RGGWCCY 1 cut(s) 264
PstI CTGCAG 2 cut(s) 298, 304
PvuII CAGCTG 1 cut(s) 299
RseI CAYNNNNRTG 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 436
SaqAI TTAA 2 cut(s) 159, 491
SatI GCNGC 5 cut(s) 294, 297, 300, 303, 306
Sau3AI GATC 2 cut(s) 138, 583
Sau96I GGNCC 3 cut(s) 4, 93, 264
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 1 cut(s) 788
SduI GDGCHC 1 cut(s) 578
SfaNI GCATC 3 cut(s) 186, 214, 744
SfcI CTRYAG 3 cut(s) 287, 294, 300
Sfr274I CTCGAG 1 cut(s) 200
SinI GGWCC 3 cut(s) 4, 93, 264
SlaI CTCGAG 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 369
SmlI CTYRAG 2 cut(s) 131, 200
SmoI CTYRAG 2 cut(s) 131, 200
Sse9I AATT 3 cut(s) 206, 412, 595
SsiI CCGC 5 cut(s) 34, 60, 215, 256, 308
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 786
TaaI ACNGT 3 cut(s) 149, 181, 625
TaiI ACGT 1 cut(s) 686
TaqI TCGA 3 cut(s) 137, 201, 566
TaqII GACCGA 1 cut(s) 81
TasI AATT 3 cut(s) 206, 412, 595
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 2 cut(s) 159, 491
Tru9I TTAA 2 cut(s) 159, 491
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 4 cut(s) 102, 329, 559, 652
TseI GCWGC 5 cut(s) 293, 296, 299, 302, 305
Tsp45I GTSAC 4 cut(s) 102, 329, 559, 652
TspDTI ATGAA 2 cut(s) 534, 689
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 3 cut(s) 4, 93, 264
XapI RAATTY 1 cut(s) 206
XhoI CTCGAG 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 87
XspI CTAG 1 cut(s) 426
Zsp2I ATGCAT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.